Wall clock time and date at job start Tue Mar 31 2020 05:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 114.00001 * 2 1 4 4 C 1.53781 * 113.61059 * 249.13150 * 3 2 1 5 5 C 1.53953 * 87.02016 * 220.04708 * 4 3 2 6 6 C 1.50701 * 113.66684 * 139.92890 * 5 4 3 7 7 O 1.21281 * 120.00344 * 262.44228 * 6 5 4 8 8 N 1.34774 * 119.99542 * 82.44349 * 6 5 4 9 9 C 1.46503 * 119.99858 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47192 * 179.97438 * 9 8 6 11 11 H 1.08997 * 110.64057 * 56.69118 * 10 9 8 12 12 C 1.55160 * 110.72060 * 180.02562 * 10 9 8 13 13 C 1.54905 * 101.58209 * 153.86777 * 12 10 9 14 14 N 1.47429 * 104.83345 * 322.99145 * 13 12 10 15 15 C 1.36930 * 125.64916 * 204.16491 * 14 13 12 16 16 H 1.08000 * 120.00021 * 161.46806 * 15 14 13 17 17 C 1.38809 * 120.00460 * 341.47342 * 15 14 13 18 18 N 1.31614 * 120.00713 * 157.61895 * 17 15 14 19 19 Si 1.86804 * 119.99650 * 337.61828 * 17 15 14 20 20 H 1.48501 * 109.47277 * 84.53377 * 19 17 15 21 21 H 1.48499 * 109.47111 * 204.53537 * 19 17 15 22 22 H 1.48500 * 109.47034 * 324.53804 * 19 17 15 23 23 C 1.47020 * 108.70201 * 24.12635 * 14 13 12 24 24 C 1.53783 * 87.11226 * 25.36317 * 5 4 3 25 25 H 1.09005 * 109.47192 * 300.01025 * 1 2 3 26 26 H 1.08991 * 109.47245 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46676 * 60.00229 * 1 2 3 28 28 H 1.09002 * 112.85239 * 20.32501 * 3 2 1 29 29 H 1.09005 * 113.61285 * 334.56904 * 4 3 2 30 30 H 1.08998 * 113.61725 * 105.46885 * 4 3 2 31 31 H 1.08998 * 113.61778 * 270.80161 * 5 4 3 32 32 H 0.97000 * 120.00078 * 0.02562 * 8 6 5 33 33 H 1.08997 * 109.47344 * 300.00619 * 9 8 6 34 34 H 1.09010 * 109.46752 * 60.00152 * 9 8 6 35 35 H 1.09001 * 111.00475 * 271.94464 * 12 10 9 36 36 H 1.08997 * 111.00291 * 35.78905 * 12 10 9 37 37 H 1.08998 * 110.36983 * 204.15685 * 13 12 10 38 38 H 1.08997 * 110.46208 * 81.87167 * 13 12 10 39 39 H 0.97000 * 120.00598 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.88628 * 239.52267 * 23 14 13 41 41 H 1.08997 * 110.01433 * 118.43137 * 23 14 13 42 42 H 1.08990 * 113.62053 * 220.09364 * 24 5 4 43 43 H 1.09008 * 113.69274 * 89.19212 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 2.7193 1.6640 -1.3166 5 6 3.8121 2.3229 -0.4553 6 6 5.2102 2.0816 -0.9633 7 8 5.8860 1.1967 -0.4824 8 7 5.7097 2.8493 -1.9520 9 6 7.0691 2.6153 -2.4455 10 6 7.3867 3.6152 -3.5591 11 1 7.2604 4.6381 -3.2045 12 6 8.8222 3.3923 -4.1042 13 6 8.6966 3.9445 -5.5460 14 7 7.3456 3.5501 -5.9849 15 6 6.9429 3.3924 -7.2841 16 1 6.0513 2.8254 -7.5081 17 6 7.6805 3.9610 -8.3134 18 7 7.5865 3.4792 -9.5346 19 14 8.8066 5.4102 -7.9653 20 1 10.1182 4.9122 -7.4785 21 1 9.0058 6.1928 -9.2115 22 1 8.1910 6.2777 -6.9290 23 6 6.5026 3.3533 -4.7966 24 6 3.3924 1.3645 0.6718 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 -0.8901 28 1 1.3220 2.0753 0.3489 29 1 3.0682 0.7954 -1.8753 30 1 2.1636 2.3700 -1.9337 31 1 3.6183 3.3718 -0.2312 32 1 5.1694 3.5573 -2.3363 33 1 7.7793 2.7430 -1.6285 34 1 7.1439 1.6005 -2.8366 35 1 9.5514 3.9631 -3.5293 36 1 9.0767 2.3325 -4.1124 37 1 9.4514 3.4952 -6.1914 38 1 8.7942 5.0301 -5.5481 39 1 8.1022 3.8763 -10.2538 40 1 6.1267 2.3304 -4.7739 41 1 5.6681 4.0544 -4.8110 42 1 3.3791 1.8290 1.6577 43 1 3.9249 0.4134 0.6591 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028616406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:43 Heat of formation + Delta-G solvation = -64.370734 kcal Electronic energy + Delta-G solvation = -22187.324659 eV Core-core repulsion = 18846.866125 eV Total energy + Delta-G solvation = -3340.458534 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.41888 -39.89402 -39.14687 -36.75635 -36.03899 -34.42985 -32.22385 -30.26199 -28.42918 -27.51569 -26.70549 -26.24888 -24.57668 -22.80100 -21.80099 -21.25689 -20.38806 -19.01110 -18.58586 -17.29936 -17.19118 -17.14033 -16.84341 -16.23721 -16.06984 -15.84428 -15.44561 -15.15543 -14.99738 -14.46031 -14.22180 -13.93462 -13.64781 -13.48163 -13.27075 -13.09273 -12.96651 -12.75259 -12.67779 -12.25526 -12.11566 -12.02268 -11.83827 -11.82413 -11.66801 -11.60141 -11.37248 -10.82852 -10.75876 -10.40544 -10.07209 -9.05800 -8.19167 -5.45931 1.30963 1.38598 1.48295 1.61866 2.19168 2.41229 2.96921 3.02424 3.30294 3.44458 3.57100 3.70321 3.78829 3.84525 3.87864 3.91302 4.12560 4.37026 4.38909 4.39851 4.55679 4.56776 4.60586 4.74382 4.77434 4.79766 4.82171 4.83556 4.89226 4.99139 5.01875 5.06582 5.08824 5.18808 5.25894 5.37022 5.48776 5.67217 6.08863 6.35541 6.58229 6.75997 7.27011 7.53330 8.09896 9.00942 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026529 B = 0.003214 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.188202 B = 8708.619138 C = 9440.838296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.407 6.407 3 C 0.066 3.934 4 C -0.141 4.141 5 C -0.127 4.127 6 C 0.519 3.481 7 O -0.588 6.588 8 N -0.716 5.716 9 C 0.140 3.860 10 C -0.095 4.095 11 H 0.108 0.892 12 C -0.111 4.111 13 C 0.099 3.901 14 N -0.630 5.630 15 C -0.238 4.238 16 H 0.055 0.945 17 C -0.040 4.040 18 N -0.959 5.959 19 Si 0.952 3.048 20 H -0.269 1.269 21 H -0.309 1.309 22 H -0.264 1.264 23 C 0.136 3.864 24 C -0.119 4.119 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.050 0.950 28 H 0.123 0.877 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.155 0.845 32 H 0.415 0.585 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.030 0.970 39 H 0.263 0.737 40 H 0.022 0.978 41 H 0.038 0.962 42 H 0.096 0.904 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.746 2.112 23.775 26.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.326 6.326 3 C 0.008 3.992 4 C -0.179 4.179 5 C -0.148 4.148 6 C 0.307 3.693 7 O -0.468 6.468 8 N -0.367 5.367 9 C 0.016 3.984 10 C -0.114 4.114 11 H 0.126 0.874 12 C -0.150 4.150 13 C -0.025 4.025 14 N -0.357 5.357 15 C -0.366 4.366 16 H 0.072 0.928 17 C -0.234 4.234 18 N -0.606 5.606 19 Si 0.780 3.220 20 H -0.195 1.195 21 H -0.238 1.238 22 H -0.189 1.189 23 C 0.011 3.989 24 C -0.157 4.157 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.069 0.931 28 H 0.141 0.859 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.172 0.828 32 H 0.251 0.749 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.125 0.875 36 H 0.091 0.909 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.040 0.960 41 H 0.056 0.944 42 H 0.114 0.886 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.151 1.315 23.880 25.981 hybrid contribution 0.170 0.748 -1.119 1.357 sum -9.980 2.063 22.761 24.938 Atomic orbital electron populations 1.22976 0.79631 1.03600 1.01096 1.87955 1.21532 1.28517 1.94639 1.23828 0.94049 0.85634 0.95654 1.23460 0.96059 1.00652 0.97731 1.22627 0.89818 1.03401 0.98932 1.20935 0.89109 0.80432 0.78840 1.90679 1.62204 1.34138 1.59787 1.45982 1.16449 1.36735 1.37555 1.21208 0.83641 0.97903 0.95643 1.22344 0.95548 1.00457 0.93049 0.87405 1.22697 0.96423 1.02054 0.93839 1.22115 0.87183 0.97122 0.96074 1.44901 1.07613 1.81621 1.01590 1.18569 1.10189 1.26418 0.81457 0.92754 1.25691 1.01250 1.01884 0.94623 1.69981 1.45900 1.42683 1.02019 0.85867 0.79540 0.80932 0.75669 1.19491 1.23791 1.18911 1.21558 0.93600 0.98084 0.85629 1.23085 0.94950 0.99364 0.98312 0.92347 0.89334 0.93141 0.85913 0.91609 0.87973 0.82786 0.74857 0.90286 0.93354 0.87497 0.90903 0.94509 0.95246 0.92855 0.95966 0.94388 0.88567 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.85 113.37 1.23 1.51 16 2 O -0.41 -8.06 10.71 -148.98 -1.60 -9.65 16 3 C 0.07 0.98 4.30 31.12 0.13 1.11 16 4 C -0.14 -2.29 7.48 31.18 0.23 -2.06 16 5 C -0.13 -1.99 4.15 -10.95 -0.05 -2.04 16 6 C 0.52 12.44 7.36 87.66 0.65 13.08 16 7 O -0.59 -19.56 15.90 -3.03 -0.05 -19.61 16 8 N -0.72 -15.14 5.40 -463.04 -2.50 -17.64 16 9 C 0.14 3.43 4.99 86.38 0.43 3.86 16 10 C -0.09 -2.49 3.02 -9.60 -0.03 -2.52 16 11 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 12 C -0.11 -3.23 6.53 31.99 0.21 -3.02 16 13 C 0.10 4.05 4.70 86.85 0.41 4.46 16 14 N -0.63 -29.90 3.21 -692.00 -2.22 -32.11 16 15 C -0.24 -13.84 10.57 84.03 0.89 -12.95 16 16 H 0.05 3.46 8.06 -2.91 -0.02 3.43 16 17 C -0.04 -2.39 5.43 84.86 0.46 -1.93 16 18 N -0.96 -61.37 13.97 21.65 0.30 -61.07 16 19 Si 0.95 46.73 24.27 68.60 1.66 48.39 16 20 H -0.27 -12.40 6.49 99.48 0.65 -11.75 16 21 H -0.31 -15.39 7.11 99.48 0.71 -14.68 16 22 H -0.26 -12.25 6.66 99.48 0.66 -11.59 16 23 C 0.14 4.93 6.52 86.73 0.57 5.49 16 24 C -0.12 -2.10 7.24 31.12 0.23 -1.87 16 25 H 0.06 0.49 8.14 -2.38 -0.02 0.48 16 26 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.12 1.02 7.88 -2.39 -0.02 1.00 16 29 H 0.07 1.49 8.10 -2.38 -0.02 1.47 16 30 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.15 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.41 6.67 8.33 -92.71 -0.77 5.90 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.05 1.42 8.06 -2.38 -0.02 1.41 16 35 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.07 2.14 8.05 -2.39 -0.02 2.12 16 37 H 0.04 1.65 6.64 -2.39 -0.02 1.64 16 38 H 0.03 1.20 5.57 -2.39 -0.01 1.19 16 39 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 40 H 0.02 0.86 7.76 -2.39 -0.02 0.84 16 41 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.07 1.75 7.44 -2.38 -0.02 1.73 16 Total: -1.00 -78.51 342.46 1.07 -77.44 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.11 Total: 11.13 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 5.36 Total: 3.13 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -4.42 Total: -110.83 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -1.64 Total: -29.26 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.66 Total: 48.39 kcal Total: -78.51 1.07 -77.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028616406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.066 kcal (2) G-P(sol) polarization free energy of solvation -78.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds