Wall clock time and date at job start Tue Mar 31 2020 05:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 113.99933 * 2 1 4 4 H 1.08996 * 109.47134 * 29.99973 * 3 2 1 5 5 C 1.52997 * 109.47106 * 270.00160 * 3 2 1 6 6 C 1.53005 * 109.46987 * 300.00017 * 5 3 2 7 7 C 1.53002 * 109.46873 * 299.99635 * 6 5 3 8 8 C 1.53001 * 109.46689 * 60.00243 * 7 6 5 9 9 C 1.52994 * 109.47552 * 299.99448 * 8 7 6 10 10 H 1.09003 * 109.47465 * 300.00787 * 9 8 7 11 11 C 1.50700 * 109.47470 * 180.02562 * 9 8 7 12 12 O 1.21281 * 120.00024 * 240.00123 * 11 9 8 13 13 N 1.34775 * 119.99603 * 60.00239 * 11 9 8 14 14 C 1.46500 * 119.99656 * 180.02562 * 13 11 9 15 15 C 1.53495 * 114.20561 * 205.00050 * 14 13 11 16 16 N 1.47066 * 87.98658 * 220.34281 * 15 14 13 17 17 C 1.36937 * 136.06113 * 206.85859 * 16 15 14 18 18 H 1.07995 * 120.00001 * 0.02562 * 17 16 15 19 19 C 1.38817 * 120.00320 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99557 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99975 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46896 * 90.00557 * 21 19 17 23 23 H 1.48506 * 109.46723 * 210.00327 * 21 19 17 24 24 H 1.48496 * 109.47378 * 330.00014 * 21 19 17 25 25 C 1.47067 * 87.88528 * 27.11900 * 16 15 14 26 26 H 1.08997 * 109.47029 * 59.99652 * 1 2 3 27 27 H 1.08994 * 109.46838 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46560 * 300.00141 * 1 2 3 29 29 H 1.09001 * 109.47226 * 60.00021 * 5 3 2 30 30 H 1.08996 * 109.47257 * 180.02562 * 5 3 2 31 31 H 1.08996 * 109.47011 * 59.99985 * 6 5 3 32 32 H 1.08999 * 109.47045 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.47002 * 179.97438 * 7 6 5 34 34 H 1.08994 * 109.47235 * 300.00389 * 7 6 5 35 35 H 1.09001 * 109.46899 * 179.97438 * 8 7 6 36 36 H 1.09003 * 109.47378 * 60.00289 * 8 7 6 37 37 H 0.96993 * 120.00448 * 0.02562 * 13 11 9 38 38 H 1.09000 * 113.28314 * 338.06653 * 14 13 11 39 39 H 1.09005 * 113.46950 * 105.56847 * 15 14 13 40 40 H 1.08998 * 113.47096 * 335.12490 * 15 14 13 41 41 H 0.96999 * 119.99537 * 179.97438 * 20 19 17 42 42 H 1.09007 * 113.46858 * 87.65629 * 25 16 15 43 43 H 1.08993 * 113.47208 * 218.09965 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.1515 0.7974 -2.1638 7 6 4.5002 0.7553 -1.4425 8 6 4.2927 0.2894 0.0000 9 6 3.3590 1.2634 0.7213 10 1 3.8022 2.2592 0.7212 11 6 3.1551 0.8048 2.1423 12 8 2.0407 0.5377 2.5393 13 7 4.2113 0.6916 2.9718 14 6 4.0132 0.2453 4.3531 15 6 5.1012 0.7152 5.3285 16 7 5.0446 -0.6157 5.9515 17 6 5.3041 -1.1359 7.1914 18 1 5.6417 -0.4898 7.9882 19 6 5.1321 -2.4935 7.4244 20 7 4.7202 -3.2809 6.4535 21 14 5.4853 -3.2029 9.1160 22 1 4.2502 -3.1583 9.9392 23 1 5.9375 -4.6106 8.9778 24 1 6.5490 -2.4038 9.7756 25 6 4.5932 -1.1434 4.6551 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.2568 1.8015 -1.9563 30 1 2.6614 2.7670 -1.4425 31 1 2.7081 -0.1983 -2.1637 32 1 3.2989 1.1291 -3.1915 33 1 5.1653 0.0611 -1.9561 34 1 4.9434 1.7510 -1.4425 35 1 5.2536 0.2590 0.5137 36 1 3.8495 -0.7064 0.0000 37 1 5.1025 0.9056 2.6544 38 1 2.9953 0.3957 4.7127 39 1 4.7743 1.5180 5.9894 40 1 6.0548 0.9282 4.8454 41 1 4.6004 -4.2296 6.6162 42 1 5.4115 -1.4255 3.9925 43 1 3.8345 -1.9209 4.7434 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031465556.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:21 Heat of formation + Delta-G solvation = -37.707642 kcal Electronic energy + Delta-G solvation = -23061.888164 eV Core-core repulsion = 19722.585828 eV Total energy + Delta-G solvation = -3339.302336 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.28688 -38.66921 -37.30477 -35.95713 -33.44511 -31.97351 -30.95366 -30.19098 -27.46478 -26.39661 -24.58361 -24.11839 -22.82953 -22.37594 -20.26977 -19.71854 -19.42505 -16.94835 -16.74700 -16.27398 -16.01029 -15.36245 -15.16270 -14.90241 -14.41759 -14.27744 -13.84279 -13.81153 -13.48562 -12.95384 -12.71131 -12.56738 -12.25333 -12.09685 -11.83102 -11.48001 -11.39760 -11.34070 -11.24165 -10.90506 -10.88683 -10.78164 -10.61282 -10.34622 -10.16563 -10.04114 -9.48101 -9.43564 -9.18523 -8.81412 -8.28882 -6.90936 -5.76415 -3.10743 3.03297 3.40098 3.43598 3.46890 3.56492 3.86204 4.46039 4.51502 4.63447 4.74081 5.01217 5.08332 5.16205 5.22461 5.27231 5.31184 5.38098 5.40205 5.49280 5.52452 5.60967 5.64969 5.70480 5.75890 5.84625 5.97139 6.02049 6.04893 6.09001 6.13756 6.27573 6.35777 6.42675 6.58481 6.83760 7.24072 7.32093 7.40404 7.58398 7.96491 7.99042 8.68219 9.02842 9.69379 10.61322 11.40617 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030685 B = 0.003580 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.272411 B = 7818.544214 C = 8051.844034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.365 6.365 3 C 0.110 3.890 4 H 0.064 0.936 5 C -0.141 4.141 6 C -0.115 4.115 7 C -0.116 4.116 8 C -0.108 4.108 9 C -0.104 4.104 10 H 0.101 0.899 11 C 0.518 3.482 12 O -0.533 6.533 13 N -0.715 5.715 14 C 0.089 3.911 15 C 0.111 3.889 16 N -0.605 5.605 17 C -0.221 4.221 18 H 0.083 0.917 19 C -0.006 4.006 20 N -0.917 5.917 21 Si 0.915 3.085 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.146 3.854 26 H 0.031 0.969 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.395 0.605 38 H 0.114 0.886 39 H 0.044 0.956 40 H 0.033 0.967 41 H 0.255 0.745 42 H 0.026 0.974 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.910 11.400 -18.344 21.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.283 6.283 3 C 0.052 3.948 4 H 0.082 0.918 5 C -0.178 4.178 6 C -0.153 4.153 7 C -0.153 4.153 8 C -0.145 4.145 9 C -0.126 4.126 10 H 0.119 0.881 11 C 0.303 3.697 12 O -0.409 6.409 13 N -0.365 5.365 14 C -0.016 4.016 15 C -0.017 4.017 16 N -0.331 5.331 17 C -0.349 4.349 18 H 0.101 0.899 19 C -0.203 4.203 20 N -0.563 5.563 21 Si 0.745 3.255 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.019 3.981 26 H 0.049 0.951 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.228 0.772 38 H 0.132 0.868 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.043 0.957 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.584 10.753 -17.758 21.066 hybrid contribution 0.604 -0.132 0.704 0.937 sum -2.980 10.621 -17.054 20.310 Atomic orbital electron populations 1.22668 0.81490 1.02360 0.99297 1.87918 1.19228 1.26390 1.94742 1.21723 0.93208 0.85994 0.93912 0.91812 1.22050 1.00208 0.99354 0.96230 1.21439 0.95331 1.00462 0.98060 1.21518 0.97185 1.01238 0.95406 1.21450 0.98319 0.99669 0.95105 1.21507 0.97192 1.01278 0.92627 0.88066 1.20363 0.84949 0.77578 0.86805 1.90677 1.24073 1.49254 1.76930 1.46008 1.09576 1.68256 1.12697 1.23555 1.00511 0.98604 0.78968 1.22719 0.95084 0.90888 0.92997 1.45277 1.78324 1.03171 1.06289 1.18899 1.39441 0.91701 0.84812 0.89931 1.24838 1.01613 0.95872 0.97987 1.69849 1.51226 1.04313 1.30884 0.86077 0.77946 0.78337 0.83118 1.21395 1.21579 1.20618 1.22502 0.96279 0.93783 0.85560 0.95081 0.90119 0.93697 0.91747 0.91192 0.91062 0.92398 0.91659 0.92098 0.91449 0.90259 0.77182 0.86816 0.93782 0.94950 0.93525 0.95660 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.82 101.05 1.09 1.55 16 2 O -0.36 -5.10 7.90 -53.47 -0.42 -5.52 16 3 C 0.11 1.29 1.89 -26.73 -0.05 1.24 16 4 H 0.06 0.77 7.74 -51.93 -0.40 0.37 16 5 C -0.14 -1.24 5.63 -26.73 -0.15 -1.39 16 6 C -0.12 -1.00 5.78 -26.73 -0.15 -1.16 16 7 C -0.12 -0.99 5.92 -26.73 -0.16 -1.14 16 8 C -0.11 -1.15 4.95 -26.73 -0.13 -1.29 16 9 C -0.10 -1.21 2.36 -91.77 -0.22 -1.43 16 10 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 11 C 0.52 8.28 7.01 -10.99 -0.08 8.21 16 12 O -0.53 -10.69 14.88 -12.68 -0.19 -10.88 16 13 N -0.71 -11.24 5.28 -53.62 -0.28 -11.52 16 14 C 0.09 1.78 4.61 -67.81 -0.31 1.47 16 15 C 0.11 2.27 8.45 -8.51 -0.07 2.20 16 16 N -0.60 -15.91 3.78 -184.78 -0.70 -16.61 16 17 C -0.22 -6.33 10.75 -15.06 -0.16 -6.49 16 18 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 20 N -0.92 -27.93 11.51 55.49 0.64 -27.29 16 21 Si 0.92 22.40 29.55 -169.99 -5.02 17.38 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.15 3.57 7.21 -8.51 -0.06 3.51 16 26 H 0.03 0.29 7.87 -51.93 -0.41 -0.12 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.04 0.57 8.09 -51.93 -0.42 0.15 16 29 H 0.06 0.53 7.87 -51.93 -0.41 0.13 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.73 7.68 -51.93 -0.40 0.33 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.66 7.57 -51.93 -0.39 0.27 16 36 H 0.08 1.05 7.68 -51.93 -0.40 0.65 16 37 H 0.39 5.02 8.17 -40.82 -0.33 4.69 16 38 H 0.11 2.51 7.45 -51.93 -0.39 2.12 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.03 0.61 8.13 -51.93 -0.42 0.19 16 41 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 2.08 7.12 -51.93 -0.37 1.71 16 LS Contribution 341.75 15.07 5.15 5.15 Total: -1.00 -33.87 341.75 -8.65 -42.52 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -7.27 Total: 1.77 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -0.55 Total: 5.01 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.34 Total: -55.42 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.61 Total: -16.41 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.87 -8.65 -42.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031465556.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.809 kcal (2) G-P(sol) polarization free energy of solvation -33.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds