Wall clock time and date at job start Tue Mar 31 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42906 * 113.99688 * 2 1 4 4 H 1.09006 * 110.53737 * 332.60360 * 3 2 1 5 5 C 1.54886 * 110.49125 * 95.22249 * 3 2 1 6 6 C 1.54886 * 102.74878 * 156.62127 * 5 3 2 7 7 C 1.54268 * 104.19318 * 322.05359 * 6 5 3 8 8 C 1.53877 * 106.59944 * 23.61534 * 7 6 5 9 9 H 1.08996 * 110.02990 * 240.65866 * 8 7 6 10 10 C 1.50697 * 110.03016 * 119.28141 * 8 7 6 11 11 O 1.21282 * 120.00127 * 241.45276 * 10 8 7 12 12 N 1.34778 * 120.00134 * 61.45565 * 10 8 7 13 13 C 1.46508 * 119.99926 * 179.97438 * 12 10 8 14 14 C 1.52992 * 109.47009 * 179.97438 * 13 12 10 15 15 C 1.53493 * 114.20826 * 185.00006 * 14 13 12 16 16 N 1.47060 * 87.98914 * 220.34718 * 15 14 13 17 17 C 1.36935 * 136.05988 * 207.08611 * 16 15 14 18 18 H 1.08005 * 119.99877 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00369 * 179.72694 * 17 16 15 20 20 N 1.31617 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47154 * 89.99247 * 21 19 17 23 23 H 1.48496 * 109.47375 * 209.99772 * 21 19 17 24 24 H 1.48502 * 109.46736 * 329.99467 * 21 19 17 25 25 C 1.47066 * 87.88562 * 27.34336 * 16 15 14 26 26 H 1.09000 * 109.46749 * 60.00461 * 1 2 3 27 27 H 1.08995 * 109.46866 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46986 * 300.00278 * 1 2 3 29 29 H 1.08997 * 110.75324 * 38.30395 * 5 3 2 30 30 H 1.08995 * 110.91051 * 275.00882 * 5 3 2 31 31 H 1.09004 * 110.48558 * 203.38399 * 6 5 3 32 32 H 1.08994 * 110.60430 * 80.79049 * 6 5 3 33 33 H 1.08997 * 110.03838 * 264.32180 * 7 6 5 34 34 H 1.09009 * 110.03069 * 142.89600 * 7 6 5 35 35 H 0.96992 * 120.00039 * 359.97438 * 12 10 8 36 36 H 1.09000 * 109.46945 * 60.00055 * 13 12 10 37 37 H 1.08999 * 109.47187 * 300.00191 * 13 12 10 38 38 H 1.09002 * 113.28744 * 318.06913 * 14 13 12 39 39 H 1.08999 * 113.46842 * 105.56641 * 15 14 13 40 40 H 1.08999 * 113.46484 * 335.13042 * 15 14 13 41 41 H 0.97004 * 120.00382 * 180.02562 * 20 19 17 42 42 H 1.08995 * 113.47095 * 87.43770 * 25 16 15 43 43 H 1.09002 * 113.46562 * 217.88366 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3378 2.0235 -0.4697 5 6 2.3514 1.7472 1.4448 6 6 3.4599 2.8065 1.2257 7 6 4.2949 2.2440 0.0568 8 6 3.3731 1.2897 -0.7226 9 1 3.7881 0.2819 -0.7165 10 6 3.2111 1.7723 -2.1410 11 8 2.1131 2.0768 -2.5563 12 7 4.2865 1.8655 -2.9481 13 6 4.1289 2.3341 -4.3272 14 6 5.4926 2.3466 -5.0205 15 6 5.4728 2.9358 -6.4377 16 7 6.4011 1.8680 -6.8387 17 6 7.3669 1.7092 -7.7964 18 1 7.5811 2.5127 -8.4857 19 6 8.0741 0.5176 -7.8783 20 7 7.8167 -0.4596 -7.0349 21 14 9.3920 0.3013 -9.1843 22 1 10.7005 0.7527 -8.6466 23 1 9.4810 -1.1312 -9.5652 24 1 9.0421 1.1105 -10.3793 25 6 5.8312 1.0432 -5.7627 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 2.7298 0.9066 2.0264 30 1 1.4830 2.1916 1.9310 31 1 4.0747 2.9060 2.1203 32 1 3.0236 3.7679 0.9549 33 1 5.1568 1.6991 0.4418 34 1 4.6250 3.0562 -0.5910 35 1 5.1647 1.6223 -2.6159 36 1 3.7145 3.3423 -4.3232 37 1 3.4545 1.6662 -4.8631 38 1 6.2939 2.7296 -4.3885 39 1 5.9068 3.9338 -6.4990 40 1 4.4987 2.8687 -6.9221 41 1 8.3111 -1.2922 -7.0918 42 1 4.9516 0.4772 -6.0691 43 1 6.5706 0.4289 -5.2488 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031794378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:58 Heat of formation + Delta-G solvation = -37.288422 kcal Electronic energy + Delta-G solvation = -22324.581585 eV Core-core repulsion = 18985.297428 eV Total energy + Delta-G solvation = -3339.284157 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.32030 -38.58535 -37.83416 -36.01764 -34.40729 -32.22195 -30.07771 -28.58589 -28.32247 -26.27856 -25.70540 -24.57874 -22.40993 -21.51919 -20.97877 -19.95409 -18.96855 -17.51206 -16.92537 -16.61827 -15.97584 -15.43585 -15.17905 -14.94957 -14.84960 -14.54149 -13.94895 -13.75822 -13.64425 -13.29367 -12.94767 -12.69759 -12.41413 -12.09688 -11.67137 -11.50349 -11.43728 -11.37320 -11.27808 -11.01900 -10.93745 -10.79837 -10.77029 -10.58870 -10.02798 -9.78387 -9.69150 -9.59170 -9.24377 -8.84096 -8.77968 -6.89715 -5.78423 -3.11061 2.75124 3.23926 3.38204 3.42914 3.45123 3.71092 4.20745 4.38230 4.44099 4.67693 4.96747 5.06713 5.15727 5.18603 5.21094 5.26167 5.26965 5.32318 5.37374 5.39065 5.46973 5.57892 5.61019 5.68627 5.74412 5.83414 5.85696 5.86439 6.00832 6.04452 6.23567 6.38464 6.52284 6.64688 6.75787 7.09204 7.19758 7.32634 7.53038 7.67533 7.96119 8.35164 9.02189 9.68679 10.62471 11.39039 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030386 B = 0.003002 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.268651 B = 9325.174295 C = 9387.428933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.381 6.381 3 C 0.097 3.903 4 H 0.087 0.913 5 C -0.145 4.145 6 C -0.122 4.122 7 C -0.115 4.115 8 C -0.116 4.116 9 H 0.112 0.888 10 C 0.519 3.481 11 O -0.548 6.548 12 N -0.720 5.720 13 C 0.133 3.867 14 C -0.159 4.159 15 C 0.128 3.872 16 N -0.611 5.611 17 C -0.219 4.219 18 H 0.081 0.919 19 C -0.008 4.008 20 N -0.920 5.920 21 Si 0.914 3.086 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.161 3.839 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.403 0.597 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.041 0.959 40 H 0.034 0.966 41 H 0.254 0.746 42 H 0.025 0.975 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.333 4.891 18.433 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.300 6.300 3 C 0.038 3.962 4 H 0.105 0.895 5 C -0.182 4.182 6 C -0.159 4.159 7 C -0.153 4.153 8 C -0.137 4.137 9 H 0.130 0.870 10 C 0.305 3.695 11 O -0.426 6.426 12 N -0.370 5.370 13 C 0.009 3.991 14 C -0.179 4.179 15 C 0.001 3.999 16 N -0.337 5.337 17 C -0.346 4.346 18 H 0.099 0.901 19 C -0.205 4.205 20 N -0.567 5.567 21 Si 0.744 3.256 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.035 3.965 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.237 0.763 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.043 0.957 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.722 4.764 17.885 21.390 hybrid contribution 0.874 -0.237 -0.706 1.148 sum -9.848 4.528 17.179 20.312 Atomic orbital electron populations 1.22759 0.80993 1.02528 1.00062 1.87867 1.19827 1.27420 1.94873 1.22892 0.93617 0.85426 0.94217 0.89492 1.22965 0.98972 0.99215 0.97093 1.22261 0.97001 0.98431 0.98246 1.22111 0.97760 0.98443 0.96984 1.21996 0.97375 1.02222 0.92156 0.87019 1.20407 0.84389 0.77407 0.87301 1.90657 1.25630 1.50037 1.76321 1.46045 1.10397 1.67227 1.13337 1.21368 0.98053 0.99215 0.80453 1.23661 0.94922 1.03021 0.96294 1.22307 0.93655 0.93554 0.90377 1.45556 1.37860 1.12755 1.37485 1.18941 1.08689 0.99281 1.07669 0.90102 1.24803 1.00136 0.96049 0.99510 1.69823 1.43427 1.05193 1.38265 0.86096 0.81520 0.77057 0.80946 1.21492 1.21605 1.20660 1.22216 0.95746 0.91318 0.87210 0.93556 0.89834 0.94349 0.90341 0.91277 0.90918 0.91275 0.90246 0.90748 0.76314 0.91967 0.91435 0.88863 0.94050 0.94799 0.93634 0.95688 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.85 101.05 1.10 1.42 16 2 O -0.38 -4.74 10.42 -35.23 -0.37 -5.10 16 3 C 0.10 1.09 2.66 -25.07 -0.07 1.03 16 4 H 0.09 1.10 6.58 -51.93 -0.34 0.76 16 5 C -0.14 -1.23 6.62 -24.74 -0.16 -1.40 16 6 C -0.12 -0.93 6.83 -25.07 -0.17 -1.10 16 7 C -0.12 -0.98 6.36 -25.61 -0.16 -1.14 16 8 C -0.12 -1.29 3.06 -90.65 -0.28 -1.57 16 9 H 0.11 1.22 8.07 -51.93 -0.42 0.80 16 10 C 0.52 7.41 6.93 -10.99 -0.08 7.33 16 11 O -0.55 -9.72 15.42 5.56 0.09 -9.63 16 12 N -0.72 -9.81 5.40 -60.29 -0.33 -10.14 16 13 C 0.13 2.08 5.59 -4.04 -0.02 2.06 16 14 C -0.16 -2.84 4.12 -89.97 -0.37 -3.21 16 15 C 0.13 2.60 8.25 -8.52 -0.07 2.53 16 16 N -0.61 -15.76 3.78 -184.62 -0.70 -16.46 16 17 C -0.22 -6.17 10.75 -15.06 -0.16 -6.34 16 18 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 20 N -0.92 -27.32 11.49 55.49 0.64 -26.68 16 21 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 25 C 0.16 3.72 6.99 -8.37 -0.06 3.66 16 26 H 0.05 0.48 8.11 -51.93 -0.42 0.06 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.65 7.59 -51.92 -0.39 0.26 16 35 H 0.40 4.71 8.44 -40.82 -0.34 4.37 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.16 7.80 -51.93 -0.41 0.76 16 38 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.03 0.61 7.87 -51.93 -0.41 0.20 16 43 H 0.07 1.82 7.10 -51.93 -0.37 1.45 16 LS Contribution 349.09 15.07 5.26 5.26 Total: -1.00 -33.33 349.09 -8.33 -41.66 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -7.30 Total: 1.05 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -0.60 Total: 2.93 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.39 Total: -53.28 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.28 Total: -14.74 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.33 -8.33 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031794378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.370 kcal (2) G-P(sol) polarization free energy of solvation -33.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds