Wall clock time and date at job start Tue Mar 31 2020 06:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00058 * 2 1 4 4 C 1.53004 * 109.46776 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46916 * 180.02562 * 4 3 2 6 6 N 1.46896 * 109.47206 * 179.97438 * 5 4 3 7 7 C 1.46905 * 111.00279 * 66.04296 * 6 5 4 8 8 C 1.38589 * 111.00031 * 189.99752 * 6 5 4 9 9 N 1.31214 * 126.47321 * 0.02562 * 8 6 5 10 10 N 1.28527 * 109.85861 * 179.74117 * 9 8 6 11 11 C 1.30288 * 110.05517 * 359.97438 * 10 9 8 12 12 C 1.50706 * 126.34930 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.46861 * 89.97908 * 12 11 10 14 14 C 1.50706 * 109.46859 * 180.02562 * 13 12 11 15 15 H 1.07991 * 120.00148 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99741 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00209 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00011 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46831 * 59.99611 * 18 16 14 20 20 H 1.48492 * 109.47352 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46978 * 300.00123 * 18 16 14 22 22 N 1.36451 * 126.47197 * 179.71560 * 8 6 5 23 23 C 1.46506 * 127.13577 * 0.23829 * 22 8 6 24 24 H 1.09008 * 109.46597 * 299.99615 * 1 2 3 25 25 H 1.08998 * 109.47468 * 59.99309 * 1 2 3 26 26 H 1.09000 * 109.47143 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47020 * 60.01071 * 3 2 1 28 28 H 1.08994 * 109.47323 * 300.00138 * 3 2 1 29 29 H 1.08992 * 109.47402 * 60.00420 * 4 3 2 30 30 H 1.09004 * 109.47273 * 299.99471 * 4 3 2 31 31 H 1.08999 * 109.47362 * 59.99418 * 5 4 3 32 32 H 1.09008 * 109.47006 * 299.99710 * 5 4 3 33 33 H 1.08991 * 109.47322 * 183.95666 * 7 6 5 34 34 H 1.08997 * 109.46717 * 303.95743 * 7 6 5 35 35 H 1.09004 * 109.47145 * 63.95312 * 7 6 5 36 36 H 1.08998 * 109.47064 * 209.98253 * 12 11 10 37 37 H 1.09000 * 109.46741 * 329.97784 * 12 11 10 38 38 H 1.08998 * 109.47563 * 300.00039 * 13 12 11 39 39 H 1.09000 * 109.47543 * 60.00368 * 13 12 11 40 40 H 0.97003 * 119.99853 * 180.02562 * 17 16 14 41 41 H 1.08990 * 109.47162 * 90.00308 * 23 22 8 42 42 H 1.09007 * 109.46895 * 210.00549 * 23 22 8 43 43 H 1.08998 * 109.46920 * 329.99582 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6222 2.4662 0.0000 7 6 6.1032 1.8701 -1.2536 8 6 6.2180 3.6971 0.2252 9 7 5.6007 4.8388 0.4182 10 7 6.4618 5.7753 0.6006 11 6 7.6695 5.2907 0.5359 12 6 8.9524 6.0648 0.6974 13 6 9.3605 6.0734 2.1719 14 6 10.6431 6.8480 2.3336 15 1 11.1197 7.2895 1.4709 16 6 11.2087 6.9920 3.5827 17 7 10.6286 6.4539 4.6332 18 14 12.7989 7.9515 3.7831 19 1 12.5969 9.3471 3.3175 20 1 13.1949 7.9600 5.2142 21 1 13.8685 7.3106 2.9767 22 7 7.5571 3.9496 0.2939 23 6 8.6483 2.9840 0.1411 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6887 1.8463 0.8901 28 1 1.6886 1.8464 -0.8899 29 1 3.8567 0.6438 -0.8908 30 1 3.8575 0.6435 0.8892 31 1 3.8365 3.1227 0.8904 32 1 3.8359 3.1237 -0.8896 33 1 7.1828 1.7310 -1.1990 34 1 5.6198 0.9051 -1.4058 35 1 5.8636 2.5318 -2.0860 36 1 9.7376 5.5942 0.1058 37 1 8.8042 7.0890 0.3554 38 1 8.5753 6.5440 2.7636 39 1 9.5087 5.0491 2.5140 40 1 11.0263 6.5556 5.5121 41 1 8.9368 2.9248 -0.9082 42 1 9.5036 3.3052 0.7357 43 1 8.3162 2.0036 0.4826 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121494891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:05 Heat of formation + Delta-G solvation = 10.683114 kcal Electronic energy + Delta-G solvation = -21960.079421 eV Core-core repulsion = 18655.168217 eV Total energy + Delta-G solvation = -3304.911204 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.00292 -39.44046 -38.49678 -36.40035 -35.64881 -33.93170 -33.00516 -30.41053 -28.83690 -28.26860 -27.40544 -26.63430 -25.35089 -23.75576 -22.63500 -21.72334 -21.27377 -18.64394 -18.13089 -17.62382 -17.52694 -17.15996 -16.96255 -16.49769 -16.05522 -15.78927 -15.59544 -14.90286 -14.89143 -14.62459 -14.37556 -14.11543 -13.89902 -13.33573 -13.23203 -12.97801 -12.82823 -12.74477 -12.66017 -12.52007 -12.46828 -12.11229 -12.02765 -11.83213 -11.79586 -11.45085 -11.29977 -11.14896 -10.73438 -10.62139 -10.56023 -9.27314 -8.19527 -6.32314 0.78030 1.23395 1.43925 1.47377 1.54931 1.79732 2.42286 2.47331 2.95391 3.14512 3.50164 3.74021 3.81012 3.87394 4.03060 4.17218 4.21759 4.28713 4.30848 4.39494 4.50225 4.51326 4.54557 4.56976 4.59547 4.65780 4.67240 4.73958 4.83318 4.86857 4.88551 5.00860 5.10732 5.19081 5.44640 5.48835 5.58933 5.65224 5.79081 6.13640 6.18393 6.21073 6.83901 7.37837 7.74904 8.92356 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.035795 B = 0.002747 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.044968 B =10191.043367 C =10380.544776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.063 3.937 4 C -0.104 4.104 5 C 0.078 3.922 6 N -0.450 5.450 7 C 0.011 3.989 8 C 0.350 3.650 9 N -0.362 5.362 10 N -0.333 5.333 11 C 0.196 3.804 12 C -0.013 4.013 13 C 0.042 3.958 14 C -0.539 4.539 15 H 0.074 0.926 16 C -0.001 4.001 17 N -0.936 5.936 18 Si 0.970 3.030 19 H -0.268 1.268 20 H -0.288 1.288 21 H -0.260 1.260 22 N -0.481 5.481 23 C 0.066 3.934 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.098 0.902 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.039 0.961 36 H 0.099 0.901 37 H 0.088 0.912 38 H -0.020 1.020 39 H -0.006 1.006 40 H 0.263 0.737 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.231 -15.442 -14.590 24.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C -0.014 4.014 4 C -0.142 4.142 5 C -0.049 4.049 6 N -0.174 5.174 7 C -0.135 4.135 8 C -0.007 4.007 9 N -0.206 5.206 10 N -0.171 5.171 11 C -0.074 4.074 12 C -0.053 4.053 13 C 0.004 3.996 14 C -0.577 4.577 15 H 0.092 0.908 16 C -0.199 4.199 17 N -0.576 5.576 18 Si 0.794 3.206 19 H -0.193 1.193 20 H -0.214 1.214 21 H -0.184 1.184 22 N -0.176 5.176 23 C -0.075 4.075 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.135 0.865 35 H 0.058 0.942 36 H 0.117 0.883 37 H 0.106 0.894 38 H -0.001 1.001 39 H 0.012 0.988 40 H 0.072 0.928 41 H 0.128 0.872 42 H 0.108 0.892 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.100 -15.002 -13.903 24.289 hybrid contribution 1.140 0.398 0.182 1.221 sum -11.960 -14.604 -13.721 23.336 Atomic orbital electron populations 1.22929 0.79463 1.03868 1.00829 1.87806 1.21466 1.28467 1.95629 1.22431 0.93318 0.84544 1.01156 1.21391 0.93129 0.95128 1.04517 1.21893 0.82362 0.97890 1.02745 1.58769 1.08772 1.13435 1.36460 1.22897 1.03126 1.01084 0.86409 1.22865 0.81929 0.92706 1.03219 1.74374 1.25731 0.95763 1.24768 1.73858 0.97986 1.24610 1.20677 1.25307 0.98203 0.81827 1.02038 1.20128 0.87441 0.98379 0.99358 1.18838 0.95083 0.95451 0.90214 1.21573 1.08077 1.33893 0.94134 0.90783 1.26031 1.01522 0.96733 0.95633 1.70126 1.41570 1.46246 0.99624 0.85430 0.79006 0.79214 0.76972 1.19258 1.21415 1.18410 1.46205 1.07117 1.09258 1.54972 1.22482 0.87848 0.91843 1.05297 0.93541 0.93023 0.88381 0.93005 0.92030 0.89296 0.90697 0.91054 0.92607 0.89324 0.86509 0.94223 0.88294 0.89373 1.00145 0.98753 0.92812 0.87182 0.89153 0.87256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.52 10.70 -148.98 -1.59 -9.11 16 3 C 0.06 1.01 5.94 71.98 0.43 1.44 16 4 C -0.10 -1.72 5.51 30.60 0.17 -1.55 16 5 C 0.08 1.71 4.44 86.31 0.38 2.10 16 6 N -0.45 -10.97 4.81 -730.91 -3.51 -14.48 16 7 C 0.01 0.17 9.17 127.69 1.17 1.35 16 8 C 0.35 11.72 7.20 260.11 1.87 13.59 16 9 N -0.36 -14.84 11.16 -58.00 -0.65 -15.49 16 10 N -0.33 -15.14 12.18 -49.54 -0.60 -15.74 16 11 C 0.20 7.96 7.32 137.64 1.01 8.97 16 12 C -0.01 -0.55 5.36 29.85 0.16 -0.39 16 13 C 0.04 2.23 4.95 29.85 0.15 2.38 16 14 C -0.54 -29.55 9.11 25.60 0.23 -29.32 16 15 H 0.07 3.75 7.74 -2.92 -0.02 3.72 16 16 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 17 N -0.94 -57.15 13.29 21.45 0.28 -56.87 16 18 Si 0.97 43.25 29.54 68.60 2.03 45.27 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 20 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 21 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 22 N -0.48 -15.88 3.21 -538.17 -1.73 -17.60 16 23 C 0.07 1.48 9.21 127.77 1.18 2.66 16 24 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 25 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 1.20 6.47 -2.39 -0.02 1.19 16 30 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.07 1.90 7.75 -2.39 -0.02 1.89 16 32 H 0.06 1.20 8.12 -2.38 -0.02 1.18 16 33 H 0.09 1.20 5.42 -2.39 -0.01 1.19 16 34 H 0.12 1.24 6.30 -2.39 -0.02 1.23 16 35 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.10 3.41 7.92 -2.39 -0.02 3.40 16 37 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 38 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 39 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 40 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 41 H 0.11 1.69 7.86 -2.39 -0.02 1.67 16 42 H 0.09 2.27 7.88 -2.38 -0.02 2.25 16 43 H 0.11 2.01 7.57 -2.39 -0.02 1.99 16 Total: -1.00 -75.96 353.64 3.66 -72.30 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 0.98 Total: 8.57 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 8.46 Total: 3.15 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -6.20 Total: -120.17 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -1.59 Total: -9.11 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -75.96 3.66 -72.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121494891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.979 kcal (2) G-P(sol) polarization free energy of solvation -75.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds