Wall clock time and date at job start Tue Mar 31 2020 07:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00281 * 2 1 4 4 H 1.48499 * 109.47126 * 270.00044 * 3 2 1 5 5 H 1.48504 * 109.46860 * 29.99999 * 3 2 1 6 6 H 1.48498 * 109.46969 * 149.99498 * 3 2 1 7 7 C 1.38810 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00205 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00231 * 180.02562 * 7 2 1 10 10 C 1.46503 * 120.00119 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47140 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47276 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00202 * 179.97438 * 12 11 10 14 14 O 1.21282 * 119.99905 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00101 * 179.97438 * 13 12 11 16 16 C 1.52995 * 109.47153 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47154 * 180.02562 * 16 15 13 18 18 C 1.54065 * 108.87686 * 297.97781 * 17 16 15 19 19 C 1.54066 * 112.81762 * 197.50425 * 18 17 16 20 20 C 1.50470 * 112.49875 * 318.28617 * 19 18 17 21 21 C 1.54246 * 108.51998 * 94.14981 * 20 19 18 22 22 C 1.45537 * 112.40731 * 280.01038 * 21 20 19 23 23 C 1.50473 * 108.87636 * 175.00284 * 17 16 15 24 24 H 0.97002 * 119.99724 * 0.02562 * 1 2 3 25 25 H 0.96997 * 119.99883 * 359.97438 * 9 7 2 26 26 H 1.08999 * 109.47192 * 59.99477 * 10 9 7 27 27 H 1.08998 * 109.46795 * 299.99594 * 10 9 7 28 28 H 1.08996 * 109.46935 * 59.99323 * 11 10 9 29 29 H 1.09004 * 109.46497 * 299.99633 * 11 10 9 30 30 H 0.97003 * 120.00055 * 0.02562 * 12 11 10 31 31 H 1.08999 * 109.46758 * 60.00291 * 15 13 12 32 32 H 1.08998 * 109.47194 * 300.00429 * 15 13 12 33 33 H 1.09009 * 109.47084 * 60.00274 * 16 15 13 34 34 H 1.08995 * 109.47404 * 300.00730 * 16 15 13 35 35 H 1.09002 * 108.85122 * 56.44317 * 17 16 15 36 36 H 1.09005 * 108.81720 * 318.36964 * 18 17 16 37 37 H 1.09004 * 108.81387 * 76.75211 * 18 17 16 38 38 H 1.08997 * 108.87949 * 197.51000 * 19 18 17 39 39 H 1.09001 * 108.87760 * 79.06417 * 19 18 17 40 40 H 1.09003 * 109.63195 * 334.43897 * 20 19 18 41 41 H 1.09001 * 109.62960 * 213.85940 * 20 19 18 42 42 H 1.09001 * 108.89247 * 40.76541 * 21 20 19 43 43 H 1.09004 * 108.89281 * 159.35535 * 21 20 19 44 44 H 1.09000 * 108.89458 * 182.68905 * 22 21 20 45 45 H 1.08995 * 108.89787 * 301.28165 * 22 21 20 46 46 H 1.09006 * 109.62936 * 95.21889 * 23 17 16 47 47 H 1.08998 * 109.78811 * 334.73404 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 6 5.6163 -2.1914 0.0024 12 7 6.3488 -3.4601 0.0030 13 6 7.6966 -3.4602 0.0036 14 8 8.3030 -2.4099 0.0041 15 6 8.4500 -4.7653 0.0048 16 6 9.9542 -4.4858 0.0060 17 6 10.7192 -5.8108 0.0066 18 6 10.3752 -6.5844 1.2937 19 6 11.3873 -7.7029 1.6072 20 6 11.7977 -8.4689 0.3788 21 6 13.0939 -7.8448 -0.1775 22 6 12.8405 -6.6419 -0.9565 23 6 12.1911 -5.5233 -0.1163 24 1 -0.4850 0.8401 -0.0004 25 1 3.8646 -0.3622 0.0007 26 1 3.8490 -3.0424 -0.8891 27 1 3.8484 -3.0426 0.8909 28 1 5.8789 -1.6202 0.8927 29 1 5.8803 -1.6195 -0.8873 30 1 5.8638 -4.3002 0.0022 31 1 8.1871 -5.3374 -0.8849 32 1 8.1862 -5.3363 0.8950 33 1 10.2168 -3.9138 0.8960 34 1 10.2184 -3.9145 -0.8839 35 1 10.4022 -6.4009 -0.8533 36 1 10.3543 -5.8849 2.1294 37 1 9.3859 -7.0286 1.1831 38 1 10.9391 -8.3944 2.3206 39 1 12.2746 -7.2592 2.0589 40 1 11.0098 -8.4067 -0.3718 41 1 11.9764 -9.5119 0.6404 42 1 13.7507 -7.5941 0.6555 43 1 13.5935 -8.5763 -0.8127 44 1 13.7851 -6.2772 -1.3601 45 1 12.1762 -6.8907 -1.7841 46 1 12.6438 -5.5003 0.8751 47 1 12.3395 -4.5623 -0.6088 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131435447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:17 Heat of formation + Delta-G solvation = -63.632828 kcal Electronic energy + Delta-G solvation = -21810.139002 eV Core-core repulsion = 18605.545561 eV Total energy + Delta-G solvation = -3204.593442 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.97465 -39.17850 -35.93722 -34.80754 -33.91323 -32.62075 -31.53468 -30.63513 -28.18454 -25.75566 -25.07439 -23.42901 -22.24536 -21.48067 -20.95099 -20.11356 -19.27436 -17.80626 -16.95608 -16.06330 -15.83542 -15.72094 -15.18951 -15.02164 -14.41433 -14.37042 -14.18529 -13.80009 -13.60523 -13.37650 -13.12988 -12.97317 -12.65958 -12.53188 -12.36773 -11.79034 -11.58018 -11.51159 -11.37153 -11.08744 -10.97044 -10.92697 -10.85727 -10.71847 -10.55352 -10.48155 -10.45595 -10.17044 -9.77179 -9.62658 -9.02828 -8.88065 -7.31444 -5.81128 -3.18513 2.70837 3.23745 3.37736 3.41496 3.45377 4.22874 4.30566 4.44727 4.56609 4.65207 4.70786 4.74766 4.89315 4.98839 5.02665 5.03030 5.09601 5.17099 5.34410 5.40688 5.42690 5.44216 5.46526 5.60889 5.61787 5.65807 5.69787 5.78954 5.79614 5.81913 5.85328 5.90531 5.94206 5.97206 6.02603 6.05417 6.13575 6.25003 6.40653 6.58288 6.63662 7.57741 7.92369 8.29797 8.37029 9.14677 9.87049 10.05485 11.36662 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046118 B = 0.002248 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.985940 B =12451.515921 C =12799.764151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.249 4.249 8 H 0.091 0.909 9 N -0.753 5.753 10 C 0.149 3.851 11 C 0.107 3.893 12 N -0.725 5.725 13 C 0.508 3.492 14 O -0.545 6.545 15 C -0.141 4.141 16 C -0.100 4.100 17 C -0.086 4.086 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.113 4.113 24 H 0.261 0.739 25 H 0.363 0.637 26 H 0.033 0.967 27 H 0.032 0.968 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.401 0.599 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.784 -18.429 0.473 32.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.378 4.378 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.021 3.979 11 C -0.017 4.017 12 N -0.377 5.377 13 C 0.294 3.706 14 O -0.423 6.423 15 C -0.181 4.181 16 C -0.138 4.138 17 C -0.104 4.104 18 C -0.152 4.152 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.151 4.151 24 H 0.071 0.929 25 H 0.196 0.804 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.235 0.765 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 26.962 -17.734 0.480 32.274 hybrid contribution 0.134 0.812 0.021 0.824 sum 27.095 -16.921 0.501 31.949 Atomic orbital electron populations 1.69701 1.05098 1.25986 1.57102 1.24681 0.95287 0.97342 1.01679 0.86537 0.79279 0.84751 0.77938 1.20907 1.21568 1.20187 1.19010 0.80236 0.94869 1.43731 0.89093 1.42541 1.04156 1.01881 1.91342 1.20732 0.87740 0.90213 0.99232 1.21578 0.92465 0.85373 1.02309 1.45958 1.06411 1.10046 1.75305 1.20762 0.82239 0.91657 0.75938 1.90701 1.68173 1.33819 1.49559 1.21750 0.96600 0.95460 1.04335 1.21544 0.92023 0.96678 1.03569 1.21007 0.95269 0.95864 0.98265 1.22040 0.98723 0.97017 0.97441 1.21343 0.99402 0.97232 0.97690 1.21347 0.97588 0.98670 0.97957 1.20497 0.97636 0.97352 1.00031 1.20486 1.00826 0.95593 0.98713 1.21406 0.94982 0.98267 1.00439 0.92939 0.80393 0.94933 0.94987 0.91490 0.91478 0.76533 0.89031 0.88865 0.91205 0.91163 0.91269 0.92043 0.92123 0.92492 0.92207 0.91549 0.92242 0.92314 0.92629 0.92488 0.92170 0.91701 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.26 13.97 55.49 0.78 -28.48 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 3 Si 0.89 22.32 27.74 -169.99 -4.71 17.61 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 7 C -0.25 -7.07 10.47 -15.06 -0.16 -7.23 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.75 -18.04 5.41 -59.91 -0.32 -18.37 16 10 C 0.15 2.78 6.37 -4.04 -0.03 2.76 16 11 C 0.11 1.74 5.79 -4.04 -0.02 1.72 16 12 N -0.73 -9.30 5.56 -60.30 -0.33 -9.63 16 13 C 0.51 6.72 7.83 -10.99 -0.09 6.63 16 14 O -0.55 -9.55 15.98 5.56 0.09 -9.46 16 15 C -0.14 -1.23 5.42 -27.89 -0.15 -1.38 16 16 C -0.10 -0.90 3.71 -26.73 -0.10 -1.00 16 17 C -0.09 -0.59 1.71 -91.32 -0.16 -0.75 16 18 C -0.11 -0.74 4.42 -25.62 -0.11 -0.85 16 19 C -0.12 -0.71 5.31 -27.44 -0.15 -0.86 16 20 C -0.12 -0.67 5.61 -27.34 -0.15 -0.83 16 21 C -0.12 -0.67 5.26 -29.60 -0.16 -0.83 16 22 C -0.12 -0.73 5.26 -29.60 -0.16 -0.88 16 23 C -0.11 -0.78 5.13 -27.34 -0.14 -0.92 16 24 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 25 H 0.36 8.58 5.53 -40.82 -0.23 8.36 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.40 3.94 8.47 -40.82 -0.35 3.59 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.66 6.83 -51.93 -0.35 0.31 16 33 H 0.07 0.72 8.03 -51.92 -0.42 0.30 16 34 H 0.07 0.72 7.92 -51.93 -0.41 0.31 16 35 H 0.07 0.47 6.62 -51.93 -0.34 0.12 16 36 H 0.06 0.43 7.93 -51.93 -0.41 0.02 16 37 H 0.06 0.37 7.36 -51.93 -0.38 -0.02 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.37 6.63 -51.93 -0.34 0.03 16 40 H 0.07 0.39 6.97 -51.93 -0.36 0.03 16 41 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.06 0.34 7.47 -51.93 -0.39 -0.05 16 43 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.37 7.46 -51.93 -0.39 -0.01 16 46 H 0.06 0.45 6.98 -51.93 -0.36 0.09 16 47 H 0.07 0.48 7.60 -51.93 -0.39 0.09 16 LS Contribution 358.63 15.07 5.40 5.40 Total: -1.00 -33.28 358.63 -9.29 -42.57 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -8.53 Total: 4.68 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -1.66 Total: -4.32 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.12 Total: -56.48 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.61 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.28 -9.29 -42.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131435447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.062 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds