Wall clock time and date at job start Tue Mar 31 2020 06:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39864 * 125.89526 * 2 1 4 4 C 1.35320 * 107.91782 * 179.86155 * 3 2 1 5 5 C 1.50699 * 126.12733 * 180.14572 * 4 3 2 6 6 O 1.42902 * 109.47189 * 0.29711 * 5 4 3 7 7 C 1.42901 * 114.00016 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.46889 * 29.99759 * 7 6 5 9 9 C 1.50696 * 109.46920 * 269.99622 * 7 6 5 10 10 H 1.08003 * 120.00030 * 124.72841 * 9 7 6 11 11 C 1.37871 * 120.00162 * 304.72640 * 9 7 6 12 12 N 1.31517 * 120.00057 * 192.29551 * 11 9 7 13 13 Si 1.86802 * 120.00132 * 12.29232 * 11 9 7 14 14 H 1.48508 * 109.46976 * 90.00676 * 13 11 9 15 15 H 1.48493 * 109.47258 * 210.00637 * 13 11 9 16 16 H 1.48499 * 109.46932 * 330.01182 * 13 11 9 17 17 C 1.53001 * 109.46983 * 149.99789 * 7 6 5 18 18 N 1.46902 * 109.47001 * 191.11430 * 17 7 6 19 19 C 1.46899 * 109.47393 * 53.73978 * 18 17 7 20 20 C 1.46898 * 109.47406 * 173.74567 * 18 17 7 21 21 C 1.46905 * 109.46792 * 293.74434 * 18 17 7 22 22 N 1.34947 * 107.74679 * 0.39560 * 4 3 2 23 23 C 1.46498 * 126.03785 * 179.74774 * 22 4 3 24 24 N 1.30838 * 125.89901 * 180.30594 * 2 1 3 25 25 H 1.08995 * 109.47249 * 269.71639 * 1 2 3 26 26 H 1.09001 * 109.46662 * 149.71470 * 1 2 3 27 27 H 1.08992 * 109.46968 * 29.71751 * 1 2 3 28 28 H 1.08001 * 126.04212 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47168 * 120.29360 * 5 4 3 30 30 H 1.09003 * 109.47167 * 240.29553 * 5 4 3 31 31 H 0.97004 * 119.99792 * 180.02562 * 12 11 9 32 32 H 1.08997 * 109.47203 * 311.10629 * 17 7 6 33 33 H 1.08996 * 109.47198 * 71.11315 * 17 7 6 34 34 H 1.09001 * 109.46678 * 51.97790 * 19 18 17 35 35 H 1.08996 * 109.46855 * 171.97330 * 19 18 17 36 36 H 1.08996 * 109.47666 * 291.97422 * 19 18 17 37 37 H 1.09002 * 109.46845 * 59.99400 * 20 18 17 38 38 H 1.08993 * 109.47548 * 179.97438 * 20 18 17 39 39 H 1.08997 * 109.47005 * 299.99521 * 20 18 17 40 40 H 1.09002 * 109.47311 * 69.49918 * 21 18 17 41 41 H 1.08999 * 109.46916 * 189.49768 * 21 18 17 42 42 H 1.08998 * 109.47170 * 309.50096 * 21 18 17 43 43 H 1.08992 * 109.46976 * 270.02457 * 23 22 4 44 44 H 1.08996 * 109.46968 * 30.02723 * 23 22 4 45 45 H 1.09003 * 109.46769 * 150.02368 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7154 0.0031 5 6 4.8350 1.5989 0.0073 6 8 4.4310 2.9696 0.0146 7 6 5.5188 3.8962 0.0185 8 1 6.3721 3.4569 -0.4981 9 6 5.9022 4.2148 1.4407 10 1 6.9203 4.0704 1.7708 11 6 4.9532 4.6906 2.3204 12 7 5.3231 5.1948 3.4773 13 14 3.1419 4.6192 1.8690 14 1 2.5666 3.3311 2.3331 15 1 2.4248 5.7448 2.5200 16 1 2.9946 4.7246 0.3951 17 6 5.0965 5.1816 -0.6960 18 7 6.2777 6.0235 -0.9281 19 6 7.3039 5.2439 -1.6330 20 6 5.8986 7.1849 -1.7439 21 6 6.8118 6.4838 0.3607 22 7 3.6088 -0.6341 -0.0039 23 6 4.7900 -1.5007 -0.0087 24 7 2.2742 -1.0598 -0.0057 25 1 -0.3633 -0.0051 1.0276 26 1 -0.3633 -0.8874 -0.5183 27 1 -0.3633 0.8924 -0.5094 28 1 1.9922 2.1598 -0.0004 29 1 5.4309 1.3911 0.8961 30 1 5.4304 1.4003 -0.8839 31 1 4.6554 5.5292 4.0964 32 1 4.6353 4.9314 -1.6514 33 1 4.3805 5.7226 -0.0774 34 1 6.8660 4.7840 -2.5189 35 1 8.1196 5.9026 -1.9311 36 1 7.6876 4.4667 -0.9722 37 1 5.1371 7.7633 -1.2207 38 1 6.7749 7.8098 -1.9157 39 1 5.5024 6.8434 -2.7001 40 1 7.2471 5.6399 0.8959 41 1 7.5787 7.2387 0.1874 42 1 6.0059 6.9142 0.9551 43 1 5.0828 -1.7099 -1.0375 44 1 5.6094 -1.0009 0.5079 45 1 4.5564 -2.4360 0.5000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222698915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:29 Heat of formation + Delta-G solvation = 148.975622 kcal Electronic energy + Delta-G solvation = -23903.799652 eV Core-core repulsion = 20656.655433 eV Total energy + Delta-G solvation = -3247.144219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.192 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.40230 -41.96324 -38.79620 -34.88302 -34.50873 -32.64334 -31.17954 -30.49786 -30.20640 -30.09525 -27.93123 -26.99308 -26.01631 -24.65174 -22.83509 -21.15708 -20.18349 -19.55606 -18.58403 -18.44733 -17.96885 -17.26484 -17.07633 -16.48022 -16.21552 -15.50699 -15.22353 -15.07285 -14.81289 -14.66064 -14.32172 -14.26845 -14.20290 -14.14977 -14.04720 -13.88085 -13.61429 -13.52845 -13.35565 -13.07987 -12.93404 -12.67424 -12.29579 -12.14263 -12.03371 -11.85656 -11.25268 -10.74701 -10.31052 -10.10995 -9.70821 -9.13370 -7.84140 -6.05284 0.23429 1.12145 1.61781 1.92293 2.06229 2.11399 2.19875 2.25495 2.33809 2.37447 2.89532 2.98028 3.09839 3.17317 3.34710 3.50026 3.55471 3.64506 3.66438 3.75376 3.76137 3.79528 3.96823 4.03151 4.10732 4.23210 4.25910 4.30706 4.33955 4.53984 4.57913 4.69005 4.72739 4.87843 4.91711 4.99563 5.17230 5.19019 5.51212 5.58516 6.01950 6.20893 6.35048 6.61868 7.03546 7.05812 7.72856 9.21333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.069 3.931 3 C -0.246 4.246 4 C 0.081 3.919 5 C 0.140 3.860 6 O -0.376 6.376 7 C 0.167 3.833 8 H 0.053 0.947 9 C -0.596 4.596 10 H 0.091 0.909 11 C 0.095 3.905 12 N -0.847 5.847 13 Si 0.891 3.109 14 H -0.264 1.264 15 H -0.300 1.300 16 H -0.252 1.252 17 C -0.006 4.006 18 N -0.254 5.254 19 C -0.046 4.046 20 C -0.041 4.041 21 C -0.043 4.043 22 N -0.373 5.373 23 C 0.100 3.900 24 N -0.295 5.295 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.146 0.854 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.281 0.719 32 H 0.107 0.893 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.162 0.838 41 H 0.090 0.910 42 H 0.115 0.885 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.187 7.224 -13.891 17.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 C -0.275 4.275 4 C -0.045 4.045 5 C 0.062 3.938 6 O -0.295 6.295 7 C 0.110 3.890 8 H 0.071 0.929 9 C -0.631 4.631 10 H 0.109 0.891 11 C -0.118 4.118 12 N -0.478 5.478 13 Si 0.721 3.279 14 H -0.189 1.189 15 H -0.228 1.228 16 H -0.179 1.179 17 C -0.127 4.127 18 N 0.087 4.913 19 C -0.187 4.187 20 C -0.182 4.182 21 C -0.182 4.182 22 N -0.157 5.157 23 C -0.042 4.042 24 N -0.118 5.118 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.164 0.836 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.125 0.875 33 H 0.143 0.857 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.144 0.856 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.179 0.821 41 H 0.109 0.891 42 H 0.133 0.867 43 H 0.092 0.908 44 H 0.105 0.895 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.132 6.002 -13.679 16.553 hybrid contribution -0.780 0.656 0.104 1.025 sum 6.352 6.659 -13.575 16.400 Atomic orbital electron populations 1.20182 0.86653 1.03216 1.03084 1.22379 0.97022 0.90824 0.99457 1.21090 0.90810 0.99690 1.15946 1.20720 0.97141 0.84386 1.02302 1.20431 0.90898 0.81565 1.00951 1.87821 1.33651 1.13352 1.94703 1.20330 0.86544 0.84655 0.97431 0.92922 1.21113 0.98740 1.49465 0.93810 0.89127 1.25038 1.00158 0.92023 0.94562 1.69882 1.36315 1.33188 1.08403 0.86778 0.83356 0.79007 0.78746 1.18887 1.22827 1.17868 1.24442 0.85858 0.97284 1.05137 1.45705 1.15351 1.14387 1.15875 1.24081 0.93102 1.00481 1.01062 1.24044 1.06499 0.89071 0.98632 1.24673 1.03826 1.06904 0.82835 1.48280 1.05647 1.03550 1.58215 1.21865 0.83828 0.95243 1.03237 1.77336 0.85983 1.22411 1.26058 0.90479 0.90909 0.90457 0.83637 0.90551 0.92340 0.90824 0.87519 0.85719 0.87169 0.86942 0.85610 0.86599 0.86643 0.86992 0.82079 0.89099 0.86691 0.90786 0.89499 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.20 10.45 36.01 0.38 0.18 16 2 C 0.07 0.42 7.22 -82.40 -0.59 -0.17 16 3 C -0.25 -1.51 10.07 -40.01 -0.40 -1.91 16 4 C 0.08 0.39 6.91 -82.26 -0.57 -0.17 16 5 C 0.14 0.26 5.70 36.01 0.21 0.47 16 6 O -0.38 -0.90 5.65 -35.23 -0.20 -1.10 16 7 C 0.17 -0.19 2.00 -27.88 -0.06 -0.24 16 8 H 0.05 -0.22 5.41 -51.93 -0.28 -0.50 16 9 C -0.60 -2.24 6.12 -34.44 -0.21 -2.45 16 10 H 0.09 0.52 7.37 -52.48 -0.39 0.13 16 11 C 0.09 0.71 5.00 -17.82 -0.09 0.63 16 12 N -0.85 -9.15 13.96 55.43 0.77 -8.38 16 13 Si 0.89 6.42 24.38 -169.99 -4.14 2.28 16 14 H -0.26 -2.76 7.11 56.52 0.40 -2.36 16 15 H -0.30 -2.69 7.11 56.52 0.40 -2.29 16 16 H -0.25 -0.97 4.96 56.52 0.28 -0.69 16 17 C -0.01 0.03 3.20 -3.82 -0.01 0.02 16 18 N -0.25 2.56 0.05 -395.63 -0.02 2.55 16 19 C -0.05 0.55 7.38 60.06 0.44 0.99 16 20 C -0.04 0.53 7.97 60.06 0.48 1.00 16 21 C -0.04 0.31 6.93 60.07 0.42 0.73 16 22 N -0.37 -1.82 4.01 -63.89 -0.26 -2.08 16 23 C 0.10 0.03 11.27 59.85 0.67 0.71 16 24 N -0.29 -2.10 12.58 33.67 0.42 -1.68 16 25 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 28 H 0.15 0.84 7.83 -52.49 -0.41 0.43 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 -0.07 8.08 -51.93 -0.42 -0.49 16 31 H 0.28 3.11 8.31 -40.82 -0.34 2.77 16 32 H 0.11 -0.79 8.06 -51.93 -0.42 -1.21 16 33 H 0.12 -0.39 4.59 -51.93 -0.24 -0.63 16 34 H 0.11 -1.44 8.07 -51.93 -0.42 -1.86 16 35 H 0.11 -1.59 8.03 -51.93 -0.42 -2.00 16 36 H 0.13 -1.33 6.09 -51.93 -0.32 -1.64 16 37 H 0.12 -1.44 8.14 -51.93 -0.42 -1.86 16 38 H 0.12 -1.69 8.01 -51.93 -0.42 -2.10 16 39 H 0.11 -1.57 8.10 -51.93 -0.42 -1.99 16 40 H 0.16 -0.67 4.71 -51.93 -0.24 -0.92 16 41 H 0.09 -0.93 8.00 -51.93 -0.42 -1.34 16 42 H 0.11 -0.54 7.62 -51.93 -0.40 -0.94 16 43 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 44 H 0.09 -0.15 7.79 -51.93 -0.40 -0.55 16 45 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 LS Contribution 343.10 15.07 5.17 5.17 Total: 0.00 -20.13 343.10 -5.41 -25.54 By element: Atomic # 1 Polarization: -14.26 SS G_CDS: -7.82 Total: -22.08 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 0.66 Total: -0.23 kcal Atomic # 7 Polarization: -10.51 SS G_CDS: 0.92 Total: -9.59 kcal Atomic # 8 Polarization: -0.90 SS G_CDS: -0.20 Total: -1.10 kcal Atomic # 14 Polarization: 6.42 SS G_CDS: -4.14 Total: 2.28 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -20.13 -5.41 -25.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222698915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.514 kcal (2) G-P(sol) polarization free energy of solvation -20.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds