Wall clock time and date at job start Tue Mar 31 2020 06:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39864 * 125.89526 * 2 1 4 4 C 1.35320 * 107.91782 * 179.86155 * 3 2 1 5 5 C 1.50699 * 126.12733 * 180.14572 * 4 3 2 6 6 O 1.42902 * 109.47189 * 0.29711 * 5 4 3 7 7 C 1.42901 * 114.00016 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.46889 * 29.99759 * 7 6 5 9 9 C 1.50696 * 109.46920 * 269.99622 * 7 6 5 10 10 H 1.08003 * 120.00030 * 124.72841 * 9 7 6 11 11 C 1.37871 * 120.00162 * 304.72640 * 9 7 6 12 12 N 1.31517 * 120.00057 * 192.29551 * 11 9 7 13 13 Si 1.86802 * 120.00132 * 12.29232 * 11 9 7 14 14 H 1.48508 * 109.46976 * 90.00676 * 13 11 9 15 15 H 1.48493 * 109.47258 * 210.00637 * 13 11 9 16 16 H 1.48499 * 109.46932 * 330.01182 * 13 11 9 17 17 C 1.53001 * 109.46983 * 149.99789 * 7 6 5 18 18 N 1.46902 * 109.47001 * 191.11430 * 17 7 6 19 19 C 1.46899 * 109.47393 * 53.73978 * 18 17 7 20 20 C 1.46898 * 109.47406 * 173.74567 * 18 17 7 21 21 C 1.46905 * 109.46792 * 293.74434 * 18 17 7 22 22 N 1.34947 * 107.74679 * 0.39560 * 4 3 2 23 23 C 1.46498 * 126.03785 * 179.74774 * 22 4 3 24 24 N 1.30838 * 125.89901 * 180.30594 * 2 1 3 25 25 H 1.08995 * 109.47249 * 269.71639 * 1 2 3 26 26 H 1.09001 * 109.46662 * 149.71470 * 1 2 3 27 27 H 1.08992 * 109.46968 * 29.71751 * 1 2 3 28 28 H 1.08001 * 126.04212 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47168 * 120.29360 * 5 4 3 30 30 H 1.09003 * 109.47167 * 240.29553 * 5 4 3 31 31 H 0.97004 * 119.99792 * 180.02562 * 12 11 9 32 32 H 1.08997 * 109.47203 * 311.10629 * 17 7 6 33 33 H 1.08996 * 109.47198 * 71.11315 * 17 7 6 34 34 H 1.09001 * 109.46678 * 51.97790 * 19 18 17 35 35 H 1.08996 * 109.46855 * 171.97330 * 19 18 17 36 36 H 1.08996 * 109.47666 * 291.97422 * 19 18 17 37 37 H 1.09002 * 109.46845 * 59.99400 * 20 18 17 38 38 H 1.08993 * 109.47548 * 179.97438 * 20 18 17 39 39 H 1.08997 * 109.47005 * 299.99521 * 20 18 17 40 40 H 1.09002 * 109.47311 * 69.49918 * 21 18 17 41 41 H 1.08999 * 109.46916 * 189.49768 * 21 18 17 42 42 H 1.08998 * 109.47170 * 309.50096 * 21 18 17 43 43 H 1.08992 * 109.46976 * 270.02457 * 23 22 4 44 44 H 1.08996 * 109.46968 * 30.02723 * 23 22 4 45 45 H 1.09003 * 109.46769 * 150.02368 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7154 0.0031 5 6 4.8350 1.5989 0.0073 6 8 4.4310 2.9696 0.0146 7 6 5.5188 3.8962 0.0185 8 1 6.3721 3.4569 -0.4981 9 6 5.9022 4.2148 1.4407 10 1 6.9203 4.0704 1.7708 11 6 4.9532 4.6906 2.3204 12 7 5.3231 5.1948 3.4773 13 14 3.1419 4.6192 1.8690 14 1 2.5666 3.3311 2.3331 15 1 2.4248 5.7448 2.5200 16 1 2.9946 4.7246 0.3951 17 6 5.0965 5.1816 -0.6960 18 7 6.2777 6.0235 -0.9281 19 6 7.3039 5.2439 -1.6330 20 6 5.8986 7.1849 -1.7439 21 6 6.8118 6.4838 0.3607 22 7 3.6088 -0.6341 -0.0039 23 6 4.7900 -1.5007 -0.0087 24 7 2.2742 -1.0598 -0.0057 25 1 -0.3633 -0.0051 1.0276 26 1 -0.3633 -0.8874 -0.5183 27 1 -0.3633 0.8924 -0.5094 28 1 1.9922 2.1598 -0.0004 29 1 5.4309 1.3911 0.8961 30 1 5.4304 1.4003 -0.8839 31 1 4.6554 5.5292 4.0964 32 1 4.6353 4.9314 -1.6514 33 1 4.3805 5.7226 -0.0774 34 1 6.8660 4.7840 -2.5189 35 1 8.1196 5.9026 -1.9311 36 1 7.6876 4.4667 -0.9722 37 1 5.1371 7.7633 -1.2207 38 1 6.7749 7.8098 -1.9157 39 1 5.5024 6.8434 -2.7001 40 1 7.2471 5.6399 0.8959 41 1 7.5787 7.2387 0.1874 42 1 6.0059 6.9142 0.9551 43 1 5.0828 -1.7099 -1.0375 44 1 5.6094 -1.0009 0.5079 45 1 4.5564 -2.4360 0.5000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222698915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:28 Heat of formation + Delta-G solvation = 139.298964 kcal Electronic energy + Delta-G solvation = -23904.219263 eV Core-core repulsion = 20656.655433 eV Total energy + Delta-G solvation = -3247.563830 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.192 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.71886 -42.27329 -38.87121 -35.16320 -34.86161 -32.76651 -31.21638 -30.39366 -29.53527 -29.51004 -27.72122 -27.22451 -26.19926 -24.33803 -22.62799 -21.45538 -20.44358 -19.52419 -18.14200 -17.93151 -17.79145 -17.20248 -17.04871 -16.60009 -16.47251 -15.54489 -15.42038 -14.99603 -14.73933 -14.45783 -14.41705 -14.14812 -13.89985 -13.64822 -13.56327 -13.30318 -13.22106 -13.17904 -13.14411 -12.98230 -12.95708 -12.80032 -12.70053 -12.43858 -12.15879 -12.08292 -11.62378 -11.04450 -10.84755 -10.42601 -9.98666 -9.47880 -8.45717 -6.54922 0.78731 0.95680 1.30372 1.42451 1.56046 1.61156 1.72660 2.28409 2.60649 2.90234 3.10756 3.14530 3.39510 3.56431 3.70208 3.94069 4.04287 4.17736 4.26245 4.30231 4.31581 4.33516 4.35821 4.42320 4.45760 4.53772 4.59406 4.61016 4.65915 4.68343 4.71520 4.75719 4.80713 4.84024 4.88023 4.94735 4.97243 5.20046 5.26964 5.34565 5.68129 5.93004 6.02689 6.30191 6.61674 6.69328 7.22195 8.62805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.055 3.945 3 C -0.277 4.277 4 C 0.082 3.918 5 C 0.141 3.859 6 O -0.394 6.394 7 C 0.158 3.842 8 H 0.096 0.904 9 C -0.547 4.547 10 H 0.071 0.929 11 C 0.063 3.937 12 N -0.908 5.908 13 Si 0.914 3.086 14 H -0.315 1.315 15 H -0.335 1.335 16 H -0.195 1.195 17 C 0.001 3.999 18 N -0.243 5.243 19 C -0.053 4.053 20 C -0.045 4.045 21 C -0.037 4.037 22 N -0.376 5.376 23 C 0.089 3.911 24 N -0.332 5.332 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.142 0.858 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.263 0.737 32 H 0.145 0.855 33 H 0.098 0.902 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.140 0.860 39 H 0.135 0.865 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.165 7.668 -18.060 21.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.110 4.110 3 C -0.306 4.306 4 C -0.047 4.047 5 C 0.063 3.937 6 O -0.313 6.313 7 C 0.101 3.899 8 H 0.114 0.886 9 C -0.584 4.584 10 H 0.089 0.911 11 C -0.142 4.142 12 N -0.544 5.544 13 Si 0.747 3.253 14 H -0.243 1.243 15 H -0.266 1.266 16 H -0.119 1.119 17 C -0.121 4.121 18 N 0.099 4.901 19 C -0.193 4.193 20 C -0.186 4.186 21 C -0.178 4.178 22 N -0.160 5.160 23 C -0.051 4.051 24 N -0.156 5.156 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.112 0.888 28 H 0.159 0.841 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.073 0.927 32 H 0.163 0.837 33 H 0.116 0.884 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.159 0.841 39 H 0.153 0.847 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.102 0.898 43 H 0.115 0.885 44 H 0.127 0.873 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.121 6.434 -17.926 21.117 hybrid contribution -1.254 0.447 1.343 1.891 sum 7.867 6.881 -16.583 19.602 Atomic orbital electron populations 1.20278 0.85075 1.04290 1.03455 1.22856 0.98374 0.90729 0.99041 1.21241 0.91816 0.99630 1.17881 1.21200 0.97866 0.84841 1.00749 1.20595 0.89653 0.80965 1.02506 1.87775 1.34911 1.13954 1.94695 1.20591 0.87849 0.86330 0.95086 0.88628 1.21433 0.96907 1.44234 0.95833 0.91076 1.25353 1.01043 0.93103 0.94664 1.70012 1.35645 1.38430 1.10355 0.86524 0.82356 0.74683 0.81701 1.24333 1.26622 1.11860 1.24048 0.87455 0.94733 1.05914 1.45554 1.14220 1.14972 1.15362 1.24327 0.93342 1.00680 1.00991 1.24290 1.07662 0.88015 0.98593 1.24350 1.03398 1.06165 0.83891 1.48629 1.05877 1.04128 1.57352 1.22230 0.82899 0.94893 1.05036 1.77252 0.87361 1.23388 1.27642 0.90381 0.90343 0.88847 0.84065 0.91497 0.87846 0.92716 0.83742 0.88361 0.84809 0.84083 0.87223 0.87518 0.84148 0.84697 0.85561 0.85478 0.89837 0.88532 0.87331 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.45 71.24 0.74 0.27 16 2 C 0.05 0.75 7.22 43.10 0.31 1.06 16 3 C -0.28 -3.65 10.07 21.99 0.22 -3.43 16 4 C 0.08 0.78 6.91 41.41 0.29 1.06 16 5 C 0.14 0.29 5.70 71.24 0.41 0.70 16 6 O -0.39 -1.30 5.65 -148.98 -0.84 -2.14 16 7 C 0.16 -0.65 2.00 29.85 0.06 -0.59 16 8 H 0.10 -1.15 5.41 -2.39 -0.01 -1.17 16 9 C -0.55 -4.60 6.12 25.60 0.16 -4.44 16 10 H 0.07 0.90 7.37 -2.91 -0.02 0.88 16 11 C 0.06 1.14 5.00 84.65 0.42 1.56 16 12 N -0.91 -23.73 13.96 21.45 0.30 -23.43 16 13 Si 0.91 15.74 24.38 68.60 1.67 17.41 16 14 H -0.31 -8.05 7.11 99.48 0.71 -7.34 16 15 H -0.34 -7.54 7.11 99.48 0.71 -6.83 16 16 H -0.20 -1.41 4.96 99.48 0.49 -0.91 16 17 C 0.00 -0.01 3.20 86.30 0.28 0.26 16 18 N -0.24 5.59 0.05 ******* -0.07 5.52 16 19 C -0.05 1.50 7.38 127.69 0.94 2.44 16 20 C -0.05 1.34 7.97 127.69 1.02 2.35 16 21 C -0.04 0.56 6.93 127.69 0.89 1.44 16 22 N -0.38 -3.65 4.01 -356.04 -1.43 -5.08 16 23 C 0.09 -0.04 11.27 127.77 1.44 1.41 16 24 N -0.33 -5.09 12.58 -47.38 -0.60 -5.68 16 25 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.14 1.82 7.83 -2.91 -0.02 1.80 16 29 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.10 -0.69 8.08 -2.39 -0.02 -0.71 16 31 H 0.26 7.34 8.31 -92.70 -0.77 6.57 16 32 H 0.14 -2.87 8.06 -2.39 -0.02 -2.89 16 33 H 0.10 -0.72 4.59 -2.39 -0.01 -0.73 16 34 H 0.13 -4.29 8.07 -2.39 -0.02 -4.31 16 35 H 0.14 -4.69 8.03 -2.39 -0.02 -4.71 16 36 H 0.11 -2.68 6.09 -2.39 -0.01 -2.70 16 37 H 0.11 -2.85 8.14 -2.39 -0.02 -2.87 16 38 H 0.14 -4.74 8.01 -2.39 -0.02 -4.75 16 39 H 0.13 -4.47 8.10 -2.39 -0.02 -4.49 16 40 H 0.13 -0.99 4.71 -2.39 -0.01 -1.00 16 41 H 0.13 -2.84 8.00 -2.39 -0.02 -2.86 16 42 H 0.08 -0.66 7.62 -2.39 -0.02 -0.67 16 43 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 44 H 0.11 -0.54 7.79 -2.39 -0.02 -0.56 16 45 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 Total: 0.00 -55.70 343.10 6.94 -48.75 By element: Atomic # 1 Polarization: -40.18 SS G_CDS: 0.73 Total: -39.45 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 7.17 Total: 4.10 kcal Atomic # 7 Polarization: -26.88 SS G_CDS: -1.79 Total: -28.67 kcal Atomic # 8 Polarization: -1.30 SS G_CDS: -0.84 Total: -2.14 kcal Atomic # 14 Polarization: 15.74 SS G_CDS: 1.67 Total: 17.41 kcal Total: -55.70 6.94 -48.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222698915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.053 kcal (2) G-P(sol) polarization free energy of solvation -55.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds