Wall clock time and date at job start Tue Mar 31 2020 06:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.49423 * 2 1 4 4 C 1.53238 * 109.47852 * 239.97090 * 2 1 3 5 5 C 1.51261 * 108.53725 * 294.64402 * 4 2 1 6 6 O 1.20760 * 120.85084 * 128.63150 * 5 4 2 7 7 C 1.51276 * 118.29921 * 308.65440 * 5 4 2 8 8 C 1.53229 * 108.53773 * 51.34838 * 7 5 4 9 9 C 1.52951 * 109.48828 * 120.03909 * 2 1 3 10 10 H 1.09007 * 109.36141 * 176.45198 * 9 2 1 11 11 O 1.42907 * 109.41168 * 296.27412 * 9 2 1 12 12 C 1.42903 * 113.99838 * 210.35114 * 11 9 2 13 13 C 1.53000 * 109.46726 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47060 * 180.02562 * 13 12 11 15 15 C 1.52992 * 109.47482 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47212 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00129 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99861 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00346 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99914 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46909 * 89.99800 * 21 19 17 23 23 H 1.48497 * 109.47155 * 209.99623 * 21 19 17 24 24 H 1.48495 * 109.46964 * 329.99741 * 21 19 17 25 25 H 1.09006 * 109.46857 * 299.96051 * 1 2 3 26 26 H 1.08996 * 109.47498 * 59.96108 * 1 2 3 27 27 H 1.09001 * 109.47132 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47102 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46955 * 300.03820 * 3 2 1 30 30 H 1.09000 * 109.46654 * 60.03816 * 3 2 1 31 31 H 1.09006 * 109.62050 * 174.93131 * 4 2 1 32 32 H 1.08998 * 109.78413 * 54.45194 * 4 2 1 33 33 H 1.09001 * 109.62417 * 291.63130 * 7 5 4 34 34 H 1.09003 * 109.62520 * 171.06068 * 7 5 4 35 35 H 1.09000 * 109.48341 * 185.39545 * 8 7 5 36 36 H 1.08998 * 109.49476 * 65.35710 * 8 7 5 37 37 H 1.09001 * 109.46938 * 60.00058 * 12 11 9 38 38 H 1.08992 * 109.47388 * 300.00049 * 12 11 9 39 39 H 1.09002 * 109.47398 * 300.00244 * 13 12 11 40 40 H 1.09001 * 109.47194 * 60.00425 * 13 12 11 41 41 H 1.09002 * 109.47153 * 300.00319 * 14 13 12 42 42 H 1.08998 * 109.47533 * 59.99948 * 14 13 12 43 43 H 1.09002 * 109.47103 * 300.00247 * 15 14 13 44 44 H 1.09001 * 109.47066 * 60.00169 * 15 14 13 45 45 H 1.09002 * 109.47153 * 300.00216 * 16 15 14 46 46 H 1.09001 * 109.47289 * 60.00300 * 16 15 14 47 47 H 0.96993 * 120.00442 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0409 -0.7230 -1.2508 5 6 1.6375 -2.1782 -1.1636 6 8 1.0639 -2.7177 -2.0791 7 6 1.9706 -2.9403 0.1001 8 6 1.4621 -2.1369 1.3017 9 6 2.0402 -0.7218 1.2482 10 1 3.1284 -0.7760 1.2148 11 8 1.6362 0.0007 2.4131 12 6 2.5403 -0.1183 3.5135 13 6 2.0105 0.6915 4.6985 14 6 2.9787 0.5647 5.8764 15 6 2.4487 1.3739 7.0617 16 6 3.4165 1.2466 8.2398 17 6 2.8941 2.0432 9.4075 18 1 1.9649 2.5864 9.3182 19 6 3.6029 2.0795 10.5896 20 7 4.7347 1.4185 10.6983 21 14 2.9557 3.0675 12.0368 22 1 2.0841 2.2052 12.8746 23 1 4.0966 3.5579 12.8512 24 1 2.1721 4.2248 11.5351 25 1 -0.3633 0.5133 0.8904 26 1 -0.3634 0.5144 -0.8896 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1305 1.4419 -0.0005 29 1 1.6769 1.9565 -0.8897 30 1 1.6780 1.9560 0.8903 31 1 3.1272 -0.6465 -1.2997 32 1 1.6018 -0.2741 -2.1416 33 1 3.0503 -3.0690 0.1761 34 1 1.4834 -3.9151 0.0788 35 1 1.7777 -2.6239 2.2244 36 1 0.3737 -2.0864 1.2712 37 1 3.5192 0.2625 3.2222 38 1 2.6285 -1.1663 3.7995 39 1 1.9225 1.7396 4.4122 40 1 1.0315 0.3111 4.9899 41 1 3.0670 -0.4833 6.1629 42 1 3.9575 0.9454 5.5848 43 1 2.3600 2.4220 6.7755 44 1 1.4700 0.9928 7.3533 45 1 3.5048 0.1985 8.5259 46 1 4.3954 1.6275 7.9486 47 1 5.2331 1.4437 11.5299 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224370239.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:33 Heat of formation + Delta-G solvation = -133.407235 kcal Electronic energy + Delta-G solvation = -22211.563288 eV Core-core repulsion = 18971.651450 eV Total energy + Delta-G solvation = -3239.911838 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.198 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.85944 -38.74220 -36.62971 -35.04658 -33.31701 -32.80133 -30.44039 -28.95567 -27.58389 -26.96653 -26.10206 -23.54888 -22.68271 -21.09506 -20.64527 -20.03456 -18.78888 -16.91182 -16.24876 -16.15304 -16.11662 -15.85936 -15.42096 -15.02629 -14.49224 -14.29731 -13.89697 -13.77419 -13.68887 -12.89058 -12.74260 -12.63915 -12.52066 -12.36479 -12.20570 -11.98714 -11.84191 -11.71374 -11.54185 -11.29103 -11.12661 -10.97392 -10.89698 -10.65906 -10.46327 -10.43774 -10.38191 -9.89103 -9.63832 -9.51104 -9.25333 -9.00535 -8.33072 -5.98304 -4.00356 1.55147 3.32716 3.38697 3.40290 3.42746 3.69024 4.15456 4.21585 4.43424 4.47465 4.59608 4.70713 4.85214 4.87983 4.90224 5.07208 5.12327 5.15316 5.30062 5.35330 5.37361 5.44283 5.45985 5.51535 5.52725 5.61641 5.64392 5.71051 5.73002 5.76033 5.87910 6.05207 6.06865 6.08312 6.27665 6.40961 6.50621 6.81527 6.95325 7.07738 7.14686 7.18340 7.70447 7.85888 8.02654 8.45938 9.07208 9.63587 11.13097 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042113 B = 0.002278 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.720383 B =12289.757836 C =12557.159450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.053 4.053 3 C -0.139 4.139 4 C -0.161 4.161 5 C 0.363 3.637 6 O -0.458 6.458 7 C -0.168 4.168 8 C -0.141 4.141 9 C 0.096 3.904 10 H 0.065 0.935 11 O -0.373 6.373 12 C 0.061 3.939 13 C -0.116 4.116 14 C -0.116 4.116 15 C -0.109 4.109 16 C 0.020 3.980 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.014 0.986 46 H 0.014 0.986 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.317 -5.707 -24.591 25.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.053 4.053 3 C -0.196 4.196 4 C -0.199 4.199 5 C 0.239 3.761 6 O -0.332 6.332 7 C -0.206 4.206 8 C -0.179 4.179 9 C 0.038 3.962 10 H 0.083 0.917 11 O -0.293 6.293 12 C -0.015 4.015 13 C -0.153 4.153 14 C -0.153 4.153 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.558 4.558 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.033 0.967 46 H 0.033 0.967 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.651 -5.914 -24.942 26.052 hybrid contribution 0.113 0.302 0.987 1.038 sum -4.538 -5.612 -23.955 25.019 Atomic orbital electron populations 1.21945 0.93524 1.01938 1.02769 1.20553 0.96933 0.96108 0.91704 1.21807 1.00792 0.94229 1.02798 1.22452 1.03456 0.94070 0.99909 1.24895 0.73977 0.90347 0.86923 1.90417 1.31426 1.71639 1.39693 1.22291 1.03826 1.00316 0.94199 1.22100 1.02695 0.95497 0.97591 1.22051 0.98081 0.90181 0.85913 0.91732 1.87923 1.48711 1.71125 1.21492 1.22704 0.92366 0.99570 0.86872 1.21585 1.00230 1.00212 0.93301 1.21585 0.98082 1.00958 0.94717 1.21608 0.99926 0.98092 0.95070 1.19110 0.94151 0.97007 0.91475 1.21296 1.07255 1.29885 0.97348 0.92731 1.25038 0.94973 0.95783 0.98785 1.69962 1.14819 1.42456 1.26420 0.86605 0.78429 0.80441 0.82599 1.20682 1.21248 1.19885 0.90878 0.92533 0.92779 0.92647 0.92500 0.90879 0.88163 0.88725 0.88215 0.88981 0.90191 0.90075 0.93410 0.93475 0.91481 0.91487 0.92477 0.92461 0.93426 0.93435 0.96726 0.96715 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 7.75 37.16 0.29 -0.90 16 2 C -0.05 -0.39 0.60 -154.41 -0.09 -0.49 16 3 C -0.14 -1.02 8.29 37.16 0.31 -0.71 16 4 C -0.16 -1.07 4.93 -27.49 -0.14 -1.21 16 5 C 0.36 3.06 5.75 -28.48 -0.16 2.90 16 6 O -0.46 -5.50 17.89 6.00 0.11 -5.39 16 7 C -0.17 -1.13 6.17 -27.48 -0.17 -1.29 16 8 C -0.14 -1.06 5.28 -26.63 -0.14 -1.20 16 9 C 0.10 0.78 1.66 -26.78 -0.04 0.74 16 10 H 0.06 0.47 7.78 -51.93 -0.40 0.06 16 11 O -0.37 -3.99 8.63 -35.23 -0.30 -4.29 16 12 C 0.06 0.68 5.74 37.16 0.21 0.89 16 13 C -0.12 -1.55 5.58 -26.73 -0.15 -1.70 16 14 C -0.12 -1.87 5.21 -26.74 -0.14 -2.01 16 15 C -0.11 -2.23 5.15 -26.74 -0.14 -2.37 16 16 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 17 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 21 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 H 0.07 0.67 7.78 -51.93 -0.40 0.26 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.46 5.61 -51.93 -0.29 0.17 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.65 7.59 -51.93 -0.39 0.25 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.59 7.80 -51.93 -0.40 0.18 16 36 H 0.08 0.67 6.20 -51.93 -0.32 0.35 16 37 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 38 H 0.05 0.49 7.80 -51.93 -0.40 0.09 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 369.15 15.07 5.56 5.56 Total: -1.00 -31.69 369.15 -8.76 -40.45 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -8.93 Total: -5.99 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -0.91 Total: -20.68 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.74 Total: -26.42 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.20 Total: -9.69 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.69 -8.76 -40.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224370239.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.957 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds