Wall clock time and date at job start Tue Mar 31 2020 06:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.48157 * 2 1 4 4 C 1.53227 * 109.48084 * 239.95561 * 2 1 3 5 5 C 1.51273 * 108.53324 * 185.39648 * 4 2 1 6 6 O 1.20763 * 120.84840 * 231.32264 * 5 4 2 7 7 C 1.51266 * 118.29981 * 51.34924 * 5 4 2 8 8 C 1.53224 * 108.53802 * 308.65042 * 7 5 4 9 9 C 1.52959 * 109.40577 * 54.62864 * 8 7 5 10 10 H 1.09007 * 109.35344 * 56.47180 * 9 8 7 11 11 O 1.42898 * 109.41423 * 176.29571 * 9 8 7 12 12 C 1.42897 * 113.99959 * 270.35102 * 11 9 8 13 13 C 1.53006 * 109.47261 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47000 * 180.02562 * 13 12 11 15 15 C 1.53006 * 109.46626 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.46623 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46953 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00344 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99769 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00300 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46755 * 89.99832 * 21 19 17 23 23 H 1.48495 * 109.46931 * 209.99846 * 21 19 17 24 24 H 1.48500 * 109.46738 * 330.00088 * 21 19 17 25 25 H 1.08999 * 109.47416 * 299.97501 * 1 2 3 26 26 H 1.09003 * 109.47076 * 59.97827 * 1 2 3 27 27 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46940 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47371 * 300.01958 * 3 2 1 30 30 H 1.09002 * 109.47416 * 60.02626 * 3 2 1 31 31 H 1.08999 * 109.63032 * 305.10644 * 4 2 1 32 32 H 1.08997 * 109.62638 * 65.49330 * 4 2 1 33 33 H 1.09003 * 109.62814 * 68.36799 * 7 5 4 34 34 H 1.09000 * 109.62387 * 188.74338 * 7 5 4 35 35 H 1.08998 * 109.48322 * 294.65167 * 8 7 5 36 36 H 1.08999 * 109.48683 * 174.61139 * 8 7 5 37 37 H 1.09004 * 109.46905 * 60.00295 * 12 11 9 38 38 H 1.09000 * 109.47424 * 300.00186 * 12 11 9 39 39 H 1.08993 * 109.46765 * 59.99898 * 13 12 11 40 40 H 1.09000 * 109.46866 * 300.00298 * 13 12 11 41 41 H 1.08993 * 109.47839 * 60.00073 * 14 13 12 42 42 H 1.09000 * 109.47160 * 299.99635 * 14 13 12 43 43 H 1.09000 * 109.47050 * 299.99699 * 15 14 13 44 44 H 1.09001 * 109.46801 * 59.99811 * 15 14 13 45 45 H 1.09000 * 109.47486 * 299.99829 * 16 15 14 46 46 H 1.09001 * 109.47362 * 60.00551 * 16 15 14 47 47 H 0.97000 * 120.00540 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4423 0.0000 4 6 2.0410 -0.7232 -1.2505 5 6 3.5475 -0.8285 -1.1631 6 8 4.2476 -0.4688 -2.0790 7 6 4.1546 -1.3965 0.1006 8 6 3.5670 -0.6489 1.3021 9 6 2.0400 -0.7216 1.2486 10 1 1.7290 -1.7658 1.2160 11 8 1.4938 -0.0994 2.4132 12 6 1.3116 -0.9894 3.5163 13 6 0.7242 -0.2196 4.7010 14 6 0.5297 -1.1724 5.8822 15 6 -0.0583 -0.4027 7.0667 16 6 -0.2534 -1.3557 8.2477 17 6 -0.8319 -0.5975 9.4146 18 1 -1.0400 0.4583 9.3229 19 6 -1.0955 -1.2517 10.5994 20 7 -0.8426 -2.5374 10.7109 21 14 -1.8119 -0.3118 12.0460 22 1 -3.2948 -0.3561 11.9795 23 1 -1.3545 -0.9326 13.3150 24 1 -1.3560 1.1006 11.9932 25 1 -0.3634 0.5134 0.8902 26 1 -0.3633 0.5142 -0.8898 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1303 1.4421 -0.0005 29 1 1.6767 1.9564 -0.8898 30 1 1.6774 1.9562 0.8902 31 1 1.6065 -1.7217 -1.2992 32 1 1.7616 -0.1585 -2.1399 33 1 3.9158 -2.4573 0.1769 34 1 5.2365 -1.2657 0.0779 35 1 3.8825 0.3940 1.2711 36 1 3.9207 -1.1086 2.2249 37 1 2.2731 -1.4168 3.8010 38 1 0.6291 -1.7893 3.2289 39 1 -0.2372 0.2074 4.4160 40 1 1.4063 0.5805 4.9885 41 1 1.4913 -1.5992 6.1671 42 1 -0.1522 -1.9728 5.5950 43 1 0.6233 0.3979 7.3541 44 1 -1.0200 0.0236 6.7815 45 1 -0.9351 -2.1560 7.9601 46 1 0.7082 -1.7824 8.5330 47 1 -1.0283 -2.9978 11.5442 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224370240.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:37 Heat of formation + Delta-G solvation = -133.408553 kcal Electronic energy + Delta-G solvation = -22211.478008 eV Core-core repulsion = 18971.566112 eV Total energy + Delta-G solvation = -3239.911895 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.198 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.85923 -38.74249 -36.63088 -35.04661 -33.31735 -32.80113 -30.43972 -28.95460 -27.58315 -26.96616 -26.10311 -23.55117 -22.68025 -21.09501 -20.64587 -20.03507 -18.79023 -16.91334 -16.24919 -16.15227 -16.11659 -15.86007 -15.42079 -15.02494 -14.49178 -14.29886 -13.89707 -13.77408 -13.68924 -12.88971 -12.74382 -12.63987 -12.52045 -12.36395 -12.20571 -11.98718 -11.84131 -11.71355 -11.54150 -11.29178 -11.12798 -10.96480 -10.90348 -10.65953 -10.45564 -10.44319 -10.38264 -9.89159 -9.63870 -9.51144 -9.25334 -9.00491 -8.33059 -5.98298 -4.00349 1.55148 3.32700 3.38682 3.40334 3.42771 3.68911 4.15417 4.21503 4.43447 4.47481 4.59695 4.70601 4.85327 4.87901 4.90176 5.07252 5.12316 5.15319 5.30038 5.35363 5.37374 5.44231 5.45952 5.51598 5.52746 5.61631 5.64314 5.71038 5.73037 5.76039 5.87895 6.05198 6.06847 6.08318 6.27684 6.40934 6.50618 6.81536 6.95326 7.07749 7.14728 7.18317 7.70444 7.85898 8.02654 8.45921 9.07196 9.63594 11.13100 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042081 B = 0.002278 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.216079 B =12288.199883 C =12557.480732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.053 4.053 3 C -0.145 4.145 4 C -0.161 4.161 5 C 0.363 3.637 6 O -0.458 6.458 7 C -0.168 4.168 8 C -0.141 4.141 9 C 0.096 3.904 10 H 0.065 0.935 11 O -0.373 6.373 12 C 0.061 3.939 13 C -0.116 4.116 14 C -0.116 4.116 15 C -0.109 4.109 16 C 0.020 3.980 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.014 0.986 46 H 0.014 0.986 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.751 2.148 -24.615 25.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.053 4.053 3 C -0.202 4.202 4 C -0.199 4.199 5 C 0.239 3.761 6 O -0.332 6.332 7 C -0.206 4.206 8 C -0.179 4.179 9 C 0.038 3.962 10 H 0.083 0.917 11 O -0.292 6.292 12 C -0.015 4.015 13 C -0.153 4.153 14 C -0.153 4.153 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.558 4.558 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.033 0.967 46 H 0.033 0.967 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.068 2.395 -24.962 26.054 hybrid contribution -0.341 -0.011 0.980 1.038 sum 6.728 2.384 -23.982 25.022 Atomic orbital electron populations 1.21808 0.92886 1.02137 1.02797 1.20551 0.96983 0.96058 0.91704 1.21945 1.00711 0.94749 1.02769 1.22449 0.94231 1.03288 0.99916 1.24892 0.91585 0.72720 0.86933 1.90417 1.65367 1.37707 1.39684 1.22283 1.02270 1.01876 0.94199 1.22099 0.96089 1.02118 0.97586 1.22051 0.91849 0.96399 0.85923 0.91740 1.87919 1.83584 1.36404 1.21338 1.22706 0.99296 0.92703 0.86813 1.21585 1.01331 0.99127 0.93283 1.21587 1.01051 0.98015 0.94690 1.21611 0.99035 0.98970 0.95080 1.19112 0.96855 0.94327 0.91452 1.21296 1.41651 0.95591 0.97242 0.92733 1.25038 0.95863 0.94899 0.98784 1.69965 1.48738 1.08570 1.26385 0.86604 0.79339 0.80074 0.82052 1.20682 1.21247 1.19885 0.90876 0.92504 0.92648 0.92779 0.92534 0.90873 0.88162 0.88721 0.88233 0.88979 0.90076 0.90191 0.93475 0.93410 0.91477 0.91491 0.92469 0.92467 0.93429 0.93431 0.96723 0.96716 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.29 37.16 0.31 -0.71 16 2 C -0.05 -0.39 0.60 -154.41 -0.09 -0.49 16 3 C -0.14 -1.18 7.75 37.15 0.29 -0.90 16 4 C -0.16 -1.07 4.93 -27.48 -0.14 -1.21 16 5 C 0.36 3.07 5.75 -28.48 -0.16 2.90 16 6 O -0.46 -5.50 17.89 6.00 0.11 -5.39 16 7 C -0.17 -1.13 6.17 -27.49 -0.17 -1.30 16 8 C -0.14 -1.06 5.28 -26.64 -0.14 -1.20 16 9 C 0.10 0.78 1.66 -26.77 -0.04 0.74 16 10 H 0.06 0.47 7.78 -51.93 -0.40 0.06 16 11 O -0.37 -3.99 8.63 -35.23 -0.30 -4.29 16 12 C 0.06 0.68 5.74 37.16 0.21 0.89 16 13 C -0.12 -1.55 5.58 -26.73 -0.15 -1.70 16 14 C -0.12 -1.87 5.21 -26.73 -0.14 -2.01 16 15 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 16 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 17 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 21 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 25 H 0.07 0.65 7.59 -51.93 -0.39 0.25 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.46 5.61 -51.93 -0.29 0.17 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.67 7.78 -51.93 -0.40 0.26 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.67 6.20 -51.93 -0.32 0.35 16 36 H 0.08 0.59 7.77 -51.93 -0.40 0.19 16 37 H 0.05 0.49 7.77 -51.93 -0.40 0.09 16 38 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -31.69 369.09 -8.76 -40.45 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -8.92 Total: -5.99 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -0.91 Total: -20.68 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.74 Total: -26.42 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.20 Total: -9.69 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.69 -8.76 -40.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224370240.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.959 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds