Wall clock time and date at job start Tue Mar 31 2020 06:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.48157 * 2 1 4 4 C 1.53227 * 109.48084 * 239.95561 * 2 1 3 5 5 C 1.51273 * 108.53324 * 185.39648 * 4 2 1 6 6 O 1.20763 * 120.84840 * 231.32264 * 5 4 2 7 7 C 1.51266 * 118.29981 * 51.34924 * 5 4 2 8 8 C 1.53224 * 108.53802 * 308.65042 * 7 5 4 9 9 C 1.52959 * 109.40577 * 54.62864 * 8 7 5 10 10 H 1.09007 * 109.35344 * 56.47180 * 9 8 7 11 11 O 1.42898 * 109.41423 * 176.29571 * 9 8 7 12 12 C 1.42897 * 113.99959 * 270.35102 * 11 9 8 13 13 C 1.53006 * 109.47261 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47000 * 180.02562 * 13 12 11 15 15 C 1.53006 * 109.46626 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.46623 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46953 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00344 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99769 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00300 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46755 * 89.99832 * 21 19 17 23 23 H 1.48495 * 109.46931 * 209.99846 * 21 19 17 24 24 H 1.48500 * 109.46738 * 330.00088 * 21 19 17 25 25 H 1.08999 * 109.47416 * 299.97501 * 1 2 3 26 26 H 1.09003 * 109.47076 * 59.97827 * 1 2 3 27 27 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46940 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47371 * 300.01958 * 3 2 1 30 30 H 1.09002 * 109.47416 * 60.02626 * 3 2 1 31 31 H 1.08999 * 109.63032 * 305.10644 * 4 2 1 32 32 H 1.08997 * 109.62638 * 65.49330 * 4 2 1 33 33 H 1.09003 * 109.62814 * 68.36799 * 7 5 4 34 34 H 1.09000 * 109.62387 * 188.74338 * 7 5 4 35 35 H 1.08998 * 109.48322 * 294.65167 * 8 7 5 36 36 H 1.08999 * 109.48683 * 174.61139 * 8 7 5 37 37 H 1.09004 * 109.46905 * 60.00295 * 12 11 9 38 38 H 1.09000 * 109.47424 * 300.00186 * 12 11 9 39 39 H 1.08993 * 109.46765 * 59.99898 * 13 12 11 40 40 H 1.09000 * 109.46866 * 300.00298 * 13 12 11 41 41 H 1.08993 * 109.47839 * 60.00073 * 14 13 12 42 42 H 1.09000 * 109.47160 * 299.99635 * 14 13 12 43 43 H 1.09000 * 109.47050 * 299.99699 * 15 14 13 44 44 H 1.09001 * 109.46801 * 59.99811 * 15 14 13 45 45 H 1.09000 * 109.47486 * 299.99829 * 16 15 14 46 46 H 1.09001 * 109.47362 * 60.00551 * 16 15 14 47 47 H 0.97000 * 120.00540 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4423 0.0000 4 6 2.0410 -0.7232 -1.2505 5 6 3.5475 -0.8285 -1.1631 6 8 4.2476 -0.4688 -2.0790 7 6 4.1546 -1.3965 0.1006 8 6 3.5670 -0.6489 1.3021 9 6 2.0400 -0.7216 1.2486 10 1 1.7290 -1.7658 1.2160 11 8 1.4938 -0.0994 2.4132 12 6 1.3116 -0.9894 3.5163 13 6 0.7242 -0.2196 4.7010 14 6 0.5297 -1.1724 5.8822 15 6 -0.0583 -0.4027 7.0667 16 6 -0.2534 -1.3557 8.2477 17 6 -0.8319 -0.5975 9.4146 18 1 -1.0400 0.4583 9.3229 19 6 -1.0955 -1.2517 10.5994 20 7 -0.8426 -2.5374 10.7109 21 14 -1.8119 -0.3118 12.0460 22 1 -3.2948 -0.3561 11.9795 23 1 -1.3545 -0.9326 13.3150 24 1 -1.3560 1.1006 11.9932 25 1 -0.3634 0.5134 0.8902 26 1 -0.3633 0.5142 -0.8898 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1303 1.4421 -0.0005 29 1 1.6767 1.9564 -0.8898 30 1 1.6774 1.9562 0.8902 31 1 1.6065 -1.7217 -1.2992 32 1 1.7616 -0.1585 -2.1399 33 1 3.9158 -2.4573 0.1769 34 1 5.2365 -1.2657 0.0779 35 1 3.8825 0.3940 1.2711 36 1 3.9207 -1.1086 2.2249 37 1 2.2731 -1.4168 3.8010 38 1 0.6291 -1.7893 3.2289 39 1 -0.2372 0.2074 4.4160 40 1 1.4063 0.5805 4.9885 41 1 1.4913 -1.5992 6.1671 42 1 -0.1522 -1.9728 5.5950 43 1 0.6233 0.3979 7.3541 44 1 -1.0200 0.0236 6.7815 45 1 -0.9351 -2.1560 7.9601 46 1 0.7082 -1.7824 8.5330 47 1 -1.0283 -2.9978 11.5442 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224370240.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:36 Heat of formation + Delta-G solvation = -149.954668 kcal Electronic energy + Delta-G solvation = -22212.195501 eV Core-core repulsion = 18971.566112 eV Total energy + Delta-G solvation = -3240.629389 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.198 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.51433 -39.50492 -37.56648 -36.46024 -34.72416 -33.89117 -32.02239 -29.68076 -28.25729 -28.14293 -27.14424 -25.10253 -23.39767 -22.36375 -21.73826 -21.26408 -19.41607 -18.42717 -17.58388 -17.03187 -16.91659 -16.55461 -16.50483 -16.08636 -15.99745 -15.24864 -14.85694 -14.60436 -14.46987 -14.31621 -13.91188 -13.74664 -13.46036 -13.23080 -13.16775 -13.01779 -12.86345 -12.75823 -12.59956 -12.55043 -12.34098 -12.26725 -12.01234 -11.89056 -11.66842 -11.60312 -11.31491 -11.30006 -11.25315 -10.93323 -10.59581 -10.54254 -10.22018 -8.19426 -6.30388 0.90251 1.40095 1.41469 1.52689 2.41347 2.65874 3.09932 3.13338 3.55982 3.62683 3.83844 3.99549 4.08211 4.13580 4.19619 4.24376 4.30719 4.33822 4.40259 4.47363 4.53661 4.63787 4.69865 4.79763 4.82044 4.85945 4.92112 4.92783 4.95971 5.01488 5.05313 5.07541 5.12733 5.16531 5.28584 5.33004 5.36365 5.41868 5.44223 5.47832 5.58077 5.80824 5.88836 6.27626 6.37403 6.46221 6.87233 7.38803 8.92316 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042081 B = 0.002278 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.216079 B =12288.199883 C =12557.480732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.049 4.049 3 C -0.144 4.144 4 C -0.156 4.156 5 C 0.365 3.635 6 O -0.500 6.500 7 C -0.164 4.164 8 C -0.138 4.138 9 C 0.091 3.909 10 H 0.082 0.918 11 O -0.387 6.387 12 C 0.066 3.934 13 C -0.108 4.108 14 C -0.107 4.107 15 C -0.100 4.100 16 C 0.021 3.979 17 C -0.545 4.545 18 H 0.058 0.942 19 C -0.003 4.003 20 N -0.934 5.934 21 Si 0.965 3.035 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.264 1.264 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.126 0.874 32 H 0.095 0.905 33 H 0.124 0.876 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.049 0.951 45 H -0.009 1.009 46 H -0.009 1.009 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.317 2.182 -25.126 26.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.049 4.049 3 C -0.201 4.201 4 C -0.194 4.194 5 C 0.244 3.756 6 O -0.377 6.377 7 C -0.202 4.202 8 C -0.175 4.175 9 C 0.034 3.966 10 H 0.100 0.900 11 O -0.306 6.306 12 C -0.010 4.010 13 C -0.145 4.145 14 C -0.144 4.144 15 C -0.137 4.137 16 C -0.016 4.016 17 C -0.583 4.583 18 H 0.076 0.924 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.789 3.211 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.188 1.188 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.144 0.856 32 H 0.113 0.887 33 H 0.142 0.858 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.010 0.990 46 H 0.009 0.991 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.629 2.437 -25.480 26.440 hybrid contribution -0.203 -0.028 1.137 1.155 sum 6.426 2.408 -24.343 25.291 Atomic orbital electron populations 1.21780 0.92541 1.02701 1.02376 1.20520 0.97161 0.95412 0.91839 1.21933 1.00269 0.95552 1.02363 1.22446 0.92951 1.04613 0.99365 1.25319 0.92331 0.71236 0.86723 1.90413 1.66340 1.39688 1.41243 1.22285 1.02051 1.03043 0.92784 1.22048 0.95794 1.01609 0.98096 1.22234 0.92042 0.97248 0.85112 0.90006 1.87897 1.83932 1.36866 1.21902 1.22556 0.99812 0.92389 0.86260 1.21409 1.01477 0.98458 0.93169 1.21431 1.00735 0.98110 0.94148 1.21449 0.99556 0.98080 0.94665 1.19049 0.94722 0.94611 0.93202 1.21759 1.41966 0.96069 0.98488 0.92377 1.26000 0.96145 0.95872 1.01997 1.70092 1.49673 1.10264 1.27392 0.85455 0.78736 0.78887 0.78031 1.19699 1.20668 1.18830 0.92543 0.91706 0.91580 0.93429 0.92066 0.92130 0.85640 0.88656 0.85765 0.89150 0.91285 0.89772 0.92627 0.92360 0.91603 0.91836 0.92358 0.92235 0.93380 0.93260 0.99019 0.99078 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.29 71.98 0.60 -1.14 16 2 C -0.05 -0.64 0.60 -52.12 -0.03 -0.68 16 3 C -0.14 -2.27 7.75 71.98 0.56 -1.71 16 4 C -0.16 -1.74 4.93 30.11 0.15 -1.59 16 5 C 0.37 5.66 5.75 29.46 0.17 5.83 16 6 O -0.50 -11.81 17.89 -1.46 -0.03 -11.83 16 7 C -0.16 -1.87 6.17 30.10 0.19 -1.69 16 8 C -0.14 -1.83 5.28 30.66 0.16 -1.67 16 9 C 0.09 1.29 1.66 30.57 0.05 1.34 16 10 H 0.08 0.90 7.78 -2.38 -0.02 0.88 16 11 O -0.39 -7.57 8.63 -148.98 -1.29 -8.85 16 12 C 0.07 1.32 5.74 71.98 0.41 1.73 16 13 C -0.11 -2.72 5.58 30.60 0.17 -2.54 16 14 C -0.11 -3.36 5.21 30.60 0.16 -3.20 16 15 C -0.10 -4.07 5.15 30.60 0.16 -3.91 16 16 C 0.02 1.13 4.97 29.85 0.15 1.28 16 17 C -0.54 -31.48 9.11 25.60 0.23 -31.24 16 18 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 19 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 20 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 21 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 25 H 0.06 0.92 7.59 -2.39 -0.02 0.91 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.05 0.80 5.61 -2.39 -0.01 0.78 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 1.10 7.78 -2.39 -0.02 1.08 16 31 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.09 6.20 -2.39 -0.01 1.07 16 36 H 0.08 1.07 7.77 -2.39 -0.02 1.05 16 37 H 0.06 1.02 7.77 -2.38 -0.02 1.00 16 38 H 0.06 1.05 8.08 -2.39 -0.02 1.03 16 39 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 45 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 46 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 47 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -68.66 369.09 5.48 -63.18 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 0.90 Total: 6.77 kcal Atomic # 6 Polarization: -42.47 SS G_CDS: 3.58 Total: -38.89 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.28 Total: -56.93 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -1.31 Total: -20.69 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -68.66 5.48 -63.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224370240.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.775 kcal (2) G-P(sol) polarization free energy of solvation -68.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds