Wall clock time and date at job start Tue Mar 31 2020 05:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46497 * 120.00250 * 2 1 4 4 C 1.52999 * 109.47190 * 264.45972 * 3 2 1 5 5 H 1.09000 * 112.96346 * 294.05735 * 4 3 2 6 6 C 1.53941 * 113.77167 * 65.73442 * 4 3 2 7 7 C 1.53937 * 86.29222 * 137.90794 * 6 4 3 8 8 N 1.47578 * 86.12019 * 336.39252 * 7 6 4 9 9 C 1.36936 * 134.49547 * 204.63800 * 8 7 6 10 10 H 1.08001 * 119.99820 * 173.36472 * 9 8 7 11 11 C 1.38808 * 119.99979 * 353.36531 * 9 8 7 12 12 N 1.31618 * 120.00007 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99756 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47112 * 90.00077 * 13 11 9 15 15 H 1.48504 * 109.47087 * 210.00078 * 13 11 9 16 16 H 1.48495 * 109.47111 * 329.99840 * 13 11 9 17 17 C 1.34775 * 119.99957 * 179.97438 * 2 1 3 18 18 O 1.21280 * 120.00378 * 175.20044 * 17 2 1 19 19 C 1.50708 * 119.99885 * 355.20894 * 17 2 1 20 20 C 1.53001 * 109.47136 * 179.97438 * 19 17 2 21 21 H 1.09003 * 110.27087 * 52.90415 * 20 19 17 22 22 C 1.54942 * 110.31017 * 174.99463 * 20 19 17 23 23 C 1.55300 * 100.98270 * 155.43693 * 22 20 19 24 24 C 1.54436 * 102.22555 * 325.92164 * 23 22 20 25 25 O 1.43240 * 107.61058 * 21.29627 * 24 23 22 26 26 H 1.09004 * 109.47147 * 270.00262 * 1 2 3 27 27 H 1.09005 * 109.46690 * 29.99580 * 1 2 3 28 28 H 1.08994 * 109.47428 * 149.99612 * 1 2 3 29 29 H 1.09000 * 109.46993 * 24.45912 * 3 2 1 30 30 H 1.09000 * 109.47228 * 144.45436 * 3 2 1 31 31 H 1.08998 * 113.74294 * 252.25791 * 6 4 3 32 32 H 1.09002 * 113.74234 * 23.45808 * 6 4 3 33 33 H 1.09007 * 113.77227 * 90.69438 * 7 6 4 34 34 H 1.08999 * 113.77359 * 222.09219 * 7 6 4 35 35 H 0.97005 * 119.99644 * 179.97438 * 12 11 9 36 36 H 1.08991 * 109.47252 * 59.99430 * 19 17 2 37 37 H 1.09002 * 109.46825 * 299.99556 * 19 17 2 38 38 H 1.08995 * 111.12807 * 273.37992 * 22 20 19 39 39 H 1.09002 * 111.12416 * 37.49610 * 22 20 19 40 40 H 1.08998 * 110.84575 * 84.07872 * 23 22 20 41 41 H 1.08997 * 110.85136 * 207.70231 * 23 22 20 42 42 H 1.09001 * 109.79446 * 261.78934 * 24 23 22 43 43 H 1.09007 * 109.85050 * 140.83321 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5732 1.6407 -1.4357 5 1 3.2861 0.9474 -1.8821 6 6 1.3617 1.9488 -2.3341 7 6 2.1926 3.1234 -2.8813 8 7 2.9344 3.0614 -1.6070 9 6 3.6646 3.9607 -0.8768 10 1 4.0312 3.6902 0.1024 11 6 3.9337 5.2199 -1.3952 12 7 3.4874 5.5493 -2.5888 13 14 4.9292 6.4469 -0.3988 14 1 6.3719 6.2832 -0.7105 15 1 4.5019 7.8269 -0.7431 16 1 4.7053 6.2063 1.0493 17 6 2.1389 -1.1672 0.0005 18 8 3.3485 -1.1692 -0.0874 19 6 1.3893 -2.4700 0.1101 20 6 2.3826 -3.6335 0.0866 21 1 3.1540 -3.4868 0.8426 22 6 1.6450 -4.9752 0.3242 23 6 2.6206 -5.9737 -0.3563 24 6 3.1728 -5.1404 -1.5335 25 8 2.9773 -3.7577 -1.2150 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8901 -0.5138 28 1 -0.3634 -0.8899 -0.5139 29 1 1.5691 2.0511 0.4255 30 1 3.1034 1.1652 0.5974 31 1 1.1556 1.1750 -3.0736 32 1 0.4734 2.2568 -1.7826 33 1 2.7947 2.8672 -3.7531 34 1 1.6212 4.0423 -3.0126 35 1 3.6751 6.4295 -2.9509 36 1 0.6999 -2.5642 -0.7288 37 1 0.8288 -2.4891 1.0448 38 1 1.5465 -5.1862 1.3890 39 1 0.6717 -4.9807 -0.1665 40 1 3.4214 -6.2594 0.3257 41 1 2.0864 -6.8520 -0.7188 42 1 2.6330 -5.3893 -2.4472 43 1 4.2359 -5.3431 -1.6639 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230866975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:33 Heat of formation + Delta-G solvation = -49.030523 kcal Electronic energy + Delta-G solvation = -22835.765385 eV Core-core repulsion = 19495.972053 eV Total energy + Delta-G solvation = -3339.793333 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.21602 -40.14186 -39.30520 -36.35419 -34.26646 -33.37602 -32.64888 -30.09724 -29.86259 -27.82015 -26.79967 -25.33074 -24.14657 -22.61772 -22.16874 -20.97535 -19.98050 -18.72351 -17.98039 -17.66877 -17.28054 -16.97676 -16.51980 -16.42281 -15.92736 -15.67554 -15.20047 -14.84157 -14.27841 -14.09870 -13.94146 -13.79711 -13.59973 -13.37377 -13.24695 -12.96697 -12.89625 -12.57797 -12.56564 -12.36825 -12.26907 -12.10104 -12.00242 -11.84289 -11.62578 -11.56985 -11.30221 -10.87260 -10.69809 -10.41681 -9.57797 -8.90459 -7.92514 -5.25661 1.42327 1.45681 1.53803 1.75587 2.06084 2.48389 2.94528 3.27855 3.43159 3.59570 3.66604 3.84580 3.91627 4.04721 4.18623 4.21876 4.29679 4.31862 4.41464 4.49441 4.56893 4.66904 4.69385 4.75901 4.86168 4.87179 4.91348 4.94088 4.98760 5.04249 5.06071 5.06912 5.10970 5.21039 5.32131 5.49328 5.55289 5.73052 5.93112 6.22374 6.55352 6.91557 7.32324 7.59429 8.56915 9.25406 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029200 B = 0.003536 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.665784 B = 7917.508423 C = 8062.486693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.610 5.610 3 C 0.138 3.862 4 C 0.129 3.871 5 H 0.016 0.984 6 C -0.120 4.120 7 C 0.158 3.842 8 N -0.629 5.629 9 C -0.234 4.234 10 H 0.078 0.922 11 C -0.066 4.066 12 N -0.954 5.954 13 Si 0.977 3.023 14 H -0.291 1.291 15 H -0.289 1.289 16 H -0.266 1.266 17 C 0.498 3.502 18 O -0.587 6.587 19 C -0.126 4.126 20 C 0.085 3.915 21 H 0.050 0.950 22 C -0.139 4.139 23 C -0.150 4.150 24 C 0.036 3.964 25 O -0.407 6.407 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.005 0.995 34 H 0.043 0.957 35 H 0.249 0.751 36 H 0.121 0.879 37 H 0.143 0.857 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.889 -23.500 7.116 27.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.343 5.343 3 C 0.013 3.987 4 C 0.022 3.978 5 H 0.033 0.967 6 C -0.157 4.157 7 C 0.032 3.968 8 N -0.356 5.356 9 C -0.362 4.362 10 H 0.096 0.904 11 C -0.259 4.259 12 N -0.603 5.603 13 Si 0.805 3.195 14 H -0.218 1.218 15 H -0.216 1.216 16 H -0.190 1.190 17 C 0.288 3.712 18 O -0.467 6.467 19 C -0.165 4.165 20 C 0.027 3.973 21 H 0.068 0.932 22 C -0.176 4.176 23 C -0.187 4.187 24 C -0.040 4.040 25 O -0.328 6.328 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.023 0.977 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.139 0.861 37 H 0.161 0.839 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.124 0.876 42 H 0.095 0.905 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.085 -23.032 7.020 26.940 hybrid contribution 1.485 1.075 -0.009 1.833 sum -10.600 -21.957 7.010 25.369 Atomic orbital electron populations 1.22185 0.76509 1.04883 1.03599 1.47952 1.08682 1.04652 1.73010 1.21223 0.96173 0.85338 0.95979 1.22562 0.94112 0.85638 0.95494 0.96687 1.23507 0.96582 0.97291 0.98368 1.22063 0.90938 0.96080 0.87692 1.46524 1.60522 1.05804 1.22711 1.19391 1.25899 0.93081 0.97864 0.90380 1.25657 1.02414 0.99927 0.97933 1.70019 1.51096 1.20868 1.18280 0.85097 0.77956 0.77975 0.78443 1.21844 1.21550 1.19018 1.21511 0.87787 0.86697 0.75186 1.90719 1.17122 1.87880 1.50951 1.21971 0.98528 0.88684 1.07338 1.22856 0.93881 0.95476 0.85101 0.93166 1.23315 0.99486 0.91393 1.03454 1.23125 0.99591 0.99258 0.96732 1.23325 1.00525 0.80964 0.99225 1.88550 1.83175 1.25853 1.35174 0.90301 0.90617 0.88312 0.89339 0.94107 0.90630 0.88417 0.97672 0.93841 0.94208 0.86056 0.83912 0.87744 0.88202 0.90513 0.87634 0.90501 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.14 9.98 127.77 1.28 2.42 16 2 N -0.61 -17.37 2.78 -846.75 -2.36 -19.72 16 3 C 0.14 5.26 5.22 86.38 0.45 5.71 16 4 C 0.13 5.84 4.54 45.09 0.20 6.04 16 5 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 6 C -0.12 -4.57 7.25 31.25 0.23 -4.35 16 7 C 0.16 8.02 7.36 86.48 0.64 8.65 16 8 N -0.63 -34.56 3.57 -694.17 -2.48 -37.04 16 9 C -0.23 -13.90 10.51 84.03 0.88 -13.02 16 10 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 11 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 12 N -0.95 -59.99 11.57 21.65 0.25 -59.74 16 13 Si 0.98 47.80 29.55 68.60 2.03 49.83 16 14 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 15 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 C 0.50 15.42 7.54 87.66 0.66 16.08 16 18 O -0.59 -25.36 15.32 4.14 0.06 -25.30 16 19 C -0.13 -2.31 4.10 29.85 0.12 -2.19 16 20 C 0.08 1.81 2.90 31.26 0.09 1.90 16 21 H 0.05 1.31 7.91 -2.39 -0.02 1.29 16 22 C -0.14 -1.56 6.57 32.05 0.21 -1.35 16 23 C -0.15 -1.80 7.02 31.87 0.22 -1.58 16 24 C 0.04 0.70 7.79 72.47 0.56 1.26 16 25 O -0.41 -11.65 10.59 -141.81 -1.50 -13.15 16 26 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.08 1.31 6.54 -2.38 -0.02 1.30 16 28 H 0.10 1.03 6.47 -2.39 -0.02 1.02 16 29 H 0.09 3.23 8.03 -2.39 -0.02 3.21 16 30 H 0.04 1.79 7.67 -2.39 -0.02 1.77 16 31 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.10 3.24 6.90 -2.39 -0.02 3.23 16 33 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 34 H 0.04 2.37 7.47 -2.39 -0.02 2.35 16 35 H 0.25 15.13 8.31 -92.70 -0.77 14.36 16 36 H 0.12 1.72 7.26 -2.39 -0.02 1.70 16 37 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.10 0.76 8.06 -2.39 -0.02 0.74 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 43 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -84.22 344.87 3.00 -81.22 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 0.97 Total: 7.82 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 6.02 Total: 16.09 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -4.58 Total: -116.50 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -1.44 Total: -38.45 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -84.22 3.00 -81.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230866975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.187 kcal (2) G-P(sol) polarization free energy of solvation -84.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds