Wall clock time and date at job start Tue Mar 31 2020 06:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 117.00440 * 2 1 4 4 O 1.20830 * 119.99895 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00088 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.90690 * 41.10402 * 5 3 2 7 7 C 1.53995 * 109.91836 * 280.00452 * 5 3 2 8 8 C 1.54599 * 105.13784 * 239.42081 * 7 5 3 9 9 H 1.08998 * 110.72559 * 96.57963 * 8 7 5 10 10 N 1.46902 * 110.72269 * 219.68200 * 8 7 5 11 11 C 1.46856 * 110.99619 * 177.55197 * 10 8 7 12 12 C 1.53039 * 109.51787 * 185.84053 * 11 10 8 13 13 C 1.53123 * 109.31189 * 300.79882 * 12 11 10 14 14 C 1.50697 * 109.52128 * 177.58251 * 13 12 11 15 15 H 1.07999 * 120.00363 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99748 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00023 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00008 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46725 * 59.99884 * 18 16 14 20 20 H 1.48499 * 109.46983 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47192 * 300.00111 * 18 16 14 22 22 C 1.53203 * 109.11533 * 57.63615 * 13 12 11 23 23 C 1.46846 * 111.00121 * 301.76080 * 10 8 7 24 24 C 1.54940 * 103.08403 * 338.13033 * 8 7 5 25 25 N 1.47906 * 109.92028 * 162.41407 * 5 3 2 26 26 H 1.08996 * 109.47556 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47122 * 300.00128 * 1 2 3 28 28 H 1.09000 * 109.46880 * 59.99588 * 1 2 3 29 29 H 1.08998 * 110.30952 * 120.50850 * 7 5 3 30 30 H 1.08997 * 110.38960 * 358.37923 * 7 5 3 31 31 H 1.09000 * 109.46462 * 65.82793 * 11 10 8 32 32 H 1.09002 * 109.45930 * 305.85061 * 11 10 8 33 33 H 1.09002 * 109.50563 * 60.76214 * 12 11 10 34 34 H 1.09003 * 109.50107 * 180.84195 * 12 11 10 35 35 H 1.08997 * 109.52263 * 297.77214 * 13 12 11 36 36 H 0.97003 * 120.00128 * 180.02562 * 17 16 14 37 37 H 1.08997 * 109.49417 * 182.41991 * 22 13 12 38 38 H 1.09007 * 109.52297 * 62.34418 * 22 13 12 39 39 H 1.09004 * 109.46012 * 294.17710 * 23 10 8 40 40 H 1.08994 * 109.46057 * 54.14289 * 23 10 8 41 41 H 1.09003 * 110.66631 * 155.75845 * 24 8 7 42 42 H 1.09001 * 110.66266 * 278.89276 * 24 8 7 43 43 H 1.00896 * 110.99881 * 24.16317 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 1 3.9771 0.5230 -0.6747 7 6 4.1040 1.0506 1.4250 8 6 4.8892 2.3376 1.7672 9 1 4.2691 3.0270 2.3401 10 7 6.1201 2.0157 2.5017 11 6 6.8997 3.2289 2.7793 12 6 8.2380 2.8427 3.4132 13 6 7.9800 2.0722 4.7110 14 6 9.2936 1.6381 5.3086 15 1 10.2206 1.8867 4.8134 16 6 9.3119 0.9235 6.4876 17 7 8.1831 0.6203 7.0904 18 14 10.9402 0.3847 7.2280 19 1 11.7708 1.5806 7.5202 20 1 10.6885 -0.3622 8.4866 21 1 11.6555 -0.4917 6.2661 22 6 7.1247 0.8396 4.4011 23 6 5.8187 1.2837 3.7385 24 6 5.2208 2.9273 0.3733 25 7 4.0001 2.6249 -0.4206 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 4.7669 0.1857 1.4477 30 1 3.2795 0.9132 2.1245 31 1 6.3442 3.8687 3.4650 32 1 7.0804 3.7654 1.8478 33 1 8.8001 2.2142 2.7224 34 1 8.8102 3.7441 3.6328 35 1 7.4521 2.7136 5.4166 36 1 8.1960 0.1179 7.9201 37 1 6.9012 0.3097 5.3270 38 1 7.6689 0.1789 3.7262 39 1 5.2682 1.9327 4.4197 40 1 5.2142 0.4076 3.5038 41 1 5.3837 4.0031 0.4395 42 1 6.0907 2.4312 -0.0572 43 1 3.2787 3.3077 -0.2438 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246800554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:17 Heat of formation + Delta-G solvation = -82.042541 kcal Electronic energy + Delta-G solvation = -22912.141861 eV Core-core repulsion = 19570.917020 eV Total energy + Delta-G solvation = -3341.224841 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.01467 -39.19113 -37.33773 -36.42765 -33.64488 -31.38337 -30.58581 -29.57873 -28.45332 -27.51047 -25.23675 -23.50645 -22.21240 -21.75186 -20.71033 -19.97511 -18.68052 -18.10121 -17.37715 -16.76473 -16.41368 -15.83029 -15.22808 -14.54300 -14.47802 -13.97634 -13.87194 -13.78887 -13.20399 -13.10602 -12.87180 -12.61715 -12.52765 -12.40852 -12.06728 -11.76454 -11.39672 -11.11620 -11.09134 -11.04910 -10.91944 -10.76454 -10.58033 -10.44561 -10.22468 -9.99642 -9.44504 -9.02758 -8.89185 -8.70824 -8.29217 -7.85188 -5.97440 -4.02771 1.88549 2.37252 3.32899 3.37456 3.40335 3.91169 4.26190 4.43944 4.45540 4.57289 4.74920 4.81237 4.88904 5.10890 5.21802 5.27438 5.28260 5.33057 5.56006 5.65988 5.75236 5.81326 5.93918 6.02279 6.04031 6.08295 6.20495 6.28306 6.36743 6.56804 6.61166 6.83691 7.06175 7.08295 7.13040 7.41036 7.43080 7.56973 7.64263 7.80788 8.03799 8.14553 8.47914 9.00738 9.61665 11.08715 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031928 B = 0.003473 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.761470 B = 8059.655271 C = 8659.822019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.463 3.537 4 O -0.507 6.507 5 C 0.084 3.916 6 H 0.124 0.876 7 C -0.131 4.131 8 C 0.048 3.952 9 H 0.043 0.957 10 N -0.521 5.521 11 C 0.059 3.941 12 C -0.106 4.106 13 C 0.048 3.952 14 C -0.511 4.511 15 H 0.054 0.946 16 C 0.061 3.939 17 N -0.893 5.893 18 Si 0.890 3.110 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.104 4.104 23 C 0.055 3.945 24 C 0.053 3.947 25 N -0.656 5.656 26 H 0.103 0.897 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.023 0.977 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.019 0.981 36 H 0.260 0.740 37 H 0.092 0.908 38 H 0.044 0.956 39 H 0.021 0.979 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.513 0.071 -13.311 18.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.270 6.270 3 C 0.306 3.694 4 O -0.395 6.395 5 C -0.027 4.027 6 H 0.141 0.859 7 C -0.170 4.170 8 C -0.063 4.063 9 H 0.061 0.939 10 N -0.246 5.246 11 C -0.069 4.069 12 C -0.144 4.144 13 C 0.030 3.970 14 C -0.549 4.549 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.718 3.282 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.142 4.142 23 C -0.072 4.072 24 C -0.077 4.077 25 N -0.288 5.288 26 H 0.121 0.879 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.117 0.883 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.227 -0.221 -14.078 18.648 hybrid contribution -0.371 0.399 1.984 2.057 sum -12.597 0.178 -12.094 17.464 Atomic orbital electron populations 1.23302 0.76162 1.03868 1.02589 1.86522 1.23554 1.33087 1.83800 1.23980 0.92323 0.81499 0.71624 1.90643 1.66864 1.36401 1.45556 1.22171 0.85951 0.95898 0.98683 0.85855 1.22770 1.00077 1.00576 0.93580 1.23180 0.91965 0.95085 0.96059 0.93901 1.62138 1.16595 1.22784 1.23084 1.22159 0.96018 0.90192 0.98518 1.21677 0.93743 0.99802 0.99143 1.18689 0.95271 0.92416 0.90661 1.21171 0.92478 1.34461 1.06784 0.92781 1.24970 0.96117 0.96014 0.96905 1.69866 1.25337 1.39981 1.18002 0.86692 0.84313 0.78742 0.78439 1.20392 1.21396 1.20280 1.21678 0.92411 1.00327 0.99779 1.22326 0.99978 0.96245 0.88677 1.23282 0.93645 1.00760 0.89974 1.63143 1.08520 1.01940 1.55180 0.87895 0.91843 0.91819 0.87967 0.91294 0.95863 0.92138 0.92360 0.93149 0.96256 0.93061 0.88977 0.93716 0.96089 0.92462 0.90270 0.88333 0.83108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.35 -3.80 10.56 -39.25 -0.41 -4.21 16 3 C 0.46 5.57 7.00 36.00 0.25 5.82 16 4 O -0.51 -7.13 15.34 -18.75 -0.29 -7.42 16 5 C 0.08 0.95 3.93 -67.80 -0.27 0.69 16 6 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 7 C -0.13 -1.61 4.97 -25.37 -0.13 -1.74 16 8 C 0.05 0.66 2.75 -65.85 -0.18 0.48 16 9 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 10 N -0.52 -8.69 4.50 -224.46 -1.01 -9.70 16 11 C 0.06 1.01 5.33 -3.83 -0.02 0.99 16 12 C -0.11 -2.16 5.31 -26.65 -0.14 -2.30 16 13 C 0.05 1.18 2.17 -91.61 -0.20 0.98 16 14 C -0.51 -13.88 8.57 -34.44 -0.29 -14.17 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 17 N -0.89 -25.23 11.38 55.43 0.63 -24.60 16 18 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C -0.10 -2.39 5.13 -26.61 -0.14 -2.52 16 23 C 0.05 1.04 5.25 -3.84 -0.02 1.02 16 24 C 0.05 0.63 6.07 -1.79 -0.01 0.62 16 25 N -0.66 -7.72 7.39 -104.19 -0.77 -8.49 16 26 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 28 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 29 H 0.10 1.29 7.54 -51.93 -0.39 0.90 16 30 H 0.07 0.86 7.68 -51.93 -0.40 0.46 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.90 6.91 -51.93 -0.36 0.54 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.09 2.38 6.18 -51.93 -0.32 2.06 16 38 H 0.04 1.05 8.14 -51.92 -0.42 0.63 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.99 6.61 -51.93 -0.34 0.64 16 41 H 0.08 0.88 7.86 -51.93 -0.41 0.47 16 42 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.35 4.25 7.31 -39.29 -0.29 3.96 16 LS Contribution 336.18 15.07 5.07 5.07 Total: -1.00 -29.14 336.18 -9.10 -38.24 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.12 Total: 2.20 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -0.17 Total: -7.23 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: -1.15 Total: -42.79 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -0.70 Total: -11.63 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.14 -9.10 -38.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246800554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.801 kcal (2) G-P(sol) polarization free energy of solvation -29.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds