Wall clock time and date at job start Tue Mar 31 2020 06:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 117.00440 * 2 1 4 4 O 1.20830 * 119.99895 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00088 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.90690 * 41.10402 * 5 3 2 7 7 C 1.53995 * 109.91836 * 280.00452 * 5 3 2 8 8 C 1.54599 * 105.13784 * 239.42081 * 7 5 3 9 9 H 1.08998 * 110.72559 * 96.57963 * 8 7 5 10 10 N 1.46902 * 110.72269 * 219.68200 * 8 7 5 11 11 C 1.46856 * 110.99619 * 177.55197 * 10 8 7 12 12 C 1.53039 * 109.51787 * 185.84053 * 11 10 8 13 13 C 1.53123 * 109.31189 * 300.79882 * 12 11 10 14 14 C 1.50697 * 109.52128 * 177.58251 * 13 12 11 15 15 H 1.07999 * 120.00363 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99748 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00023 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00008 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46725 * 59.99884 * 18 16 14 20 20 H 1.48499 * 109.46983 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47192 * 300.00111 * 18 16 14 22 22 C 1.53203 * 109.11533 * 57.63615 * 13 12 11 23 23 C 1.46846 * 111.00121 * 301.76080 * 10 8 7 24 24 C 1.54940 * 103.08403 * 338.13033 * 8 7 5 25 25 N 1.47906 * 109.92028 * 162.41407 * 5 3 2 26 26 H 1.08996 * 109.47556 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47122 * 300.00128 * 1 2 3 28 28 H 1.09000 * 109.46880 * 59.99588 * 1 2 3 29 29 H 1.08998 * 110.30952 * 120.50850 * 7 5 3 30 30 H 1.08997 * 110.38960 * 358.37923 * 7 5 3 31 31 H 1.09000 * 109.46462 * 65.82793 * 11 10 8 32 32 H 1.09002 * 109.45930 * 305.85061 * 11 10 8 33 33 H 1.09002 * 109.50563 * 60.76214 * 12 11 10 34 34 H 1.09003 * 109.50107 * 180.84195 * 12 11 10 35 35 H 1.08997 * 109.52263 * 297.77214 * 13 12 11 36 36 H 0.97003 * 120.00128 * 180.02562 * 17 16 14 37 37 H 1.08997 * 109.49417 * 182.41991 * 22 13 12 38 38 H 1.09007 * 109.52297 * 62.34418 * 22 13 12 39 39 H 1.09004 * 109.46012 * 294.17710 * 23 10 8 40 40 H 1.08994 * 109.46057 * 54.14289 * 23 10 8 41 41 H 1.09003 * 110.66631 * 155.75845 * 24 8 7 42 42 H 1.09001 * 110.66266 * 278.89276 * 24 8 7 43 43 H 1.00896 * 110.99881 * 24.16317 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 1 3.9771 0.5230 -0.6747 7 6 4.1040 1.0506 1.4250 8 6 4.8892 2.3376 1.7672 9 1 4.2691 3.0270 2.3401 10 7 6.1201 2.0157 2.5017 11 6 6.8997 3.2289 2.7793 12 6 8.2380 2.8427 3.4132 13 6 7.9800 2.0722 4.7110 14 6 9.2936 1.6381 5.3086 15 1 10.2206 1.8867 4.8134 16 6 9.3119 0.9235 6.4876 17 7 8.1831 0.6203 7.0904 18 14 10.9402 0.3847 7.2280 19 1 11.7708 1.5806 7.5202 20 1 10.6885 -0.3622 8.4866 21 1 11.6555 -0.4917 6.2661 22 6 7.1247 0.8396 4.4011 23 6 5.8187 1.2837 3.7385 24 6 5.2208 2.9273 0.3733 25 7 4.0001 2.6249 -0.4206 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 4.7669 0.1857 1.4477 30 1 3.2795 0.9132 2.1245 31 1 6.3442 3.8687 3.4650 32 1 7.0804 3.7654 1.8478 33 1 8.8001 2.2142 2.7224 34 1 8.8102 3.7441 3.6328 35 1 7.4521 2.7136 5.4166 36 1 8.1960 0.1179 7.9201 37 1 6.9012 0.3097 5.3270 38 1 7.6689 0.1789 3.7262 39 1 5.2682 1.9327 4.4197 40 1 5.2142 0.4076 3.5038 41 1 5.3837 4.0031 0.4395 42 1 6.0907 2.4312 -0.0572 43 1 3.2787 3.3077 -0.2438 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246800554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:17 Heat of formation + Delta-G solvation = -101.813514 kcal Electronic energy + Delta-G solvation = -22912.999195 eV Core-core repulsion = 19570.917020 eV Total energy + Delta-G solvation = -3342.082175 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.93893 -40.39550 -38.57546 -37.44824 -35.39969 -33.13514 -31.84938 -30.85169 -29.70407 -28.35281 -27.02191 -24.59890 -23.82827 -23.16492 -21.75924 -21.08737 -20.37889 -19.02870 -18.45343 -18.26378 -17.65780 -17.14339 -16.46806 -16.13705 -15.70716 -15.25493 -14.93148 -14.89737 -14.69245 -14.36787 -14.15902 -14.10323 -13.92399 -13.58868 -13.14213 -13.03184 -12.78185 -12.67486 -12.59421 -12.36341 -12.24579 -12.04791 -11.90338 -11.87893 -11.80423 -11.52854 -11.31579 -10.77782 -10.63649 -10.36940 -9.87826 -9.24703 -8.06742 -6.19954 0.96666 1.42780 1.43743 1.51278 1.57644 2.44954 2.81671 3.13108 3.20358 3.48777 3.65502 3.77871 4.04989 4.17285 4.25817 4.27315 4.28877 4.30871 4.34085 4.47186 4.53889 4.63980 4.67589 4.77520 4.78789 4.86710 4.94763 5.00400 5.06649 5.12614 5.21301 5.25410 5.36240 5.42927 5.58364 5.64742 6.01409 6.02215 6.13737 6.26856 6.31884 6.42243 6.55107 6.91858 7.47882 8.97512 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031928 B = 0.003473 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.761470 B = 8059.655271 C = 8659.822019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.465 3.535 4 O -0.532 6.532 5 C 0.089 3.911 6 H 0.141 0.859 7 C -0.126 4.126 8 C 0.047 3.953 9 H 0.037 0.963 10 N -0.519 5.519 11 C 0.064 3.936 12 C -0.099 4.099 13 C 0.043 3.957 14 C -0.533 4.533 15 H 0.052 0.948 16 C 0.012 3.988 17 N -0.918 5.918 18 Si 0.952 3.048 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.271 1.271 22 C -0.094 4.094 23 C 0.068 3.932 24 C 0.061 3.939 25 N -0.654 5.654 26 H 0.133 0.867 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.016 0.984 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.052 0.948 35 H -0.016 1.016 36 H 0.259 0.741 37 H 0.059 0.941 38 H 0.035 0.965 39 H 0.007 0.993 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.644 -0.140 -14.946 19.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.309 3.691 4 O -0.421 6.421 5 C -0.022 4.022 6 H 0.158 0.842 7 C -0.166 4.166 8 C -0.064 4.064 9 H 0.055 0.945 10 N -0.244 5.244 11 C -0.063 4.063 12 C -0.136 4.136 13 C 0.025 3.975 14 C -0.571 4.571 15 H 0.070 0.930 16 C -0.186 4.186 17 N -0.558 5.558 18 Si 0.778 3.222 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.196 1.196 22 C -0.132 4.132 23 C -0.060 4.060 24 C -0.068 4.068 25 N -0.285 5.285 26 H 0.151 0.849 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.034 0.966 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.002 0.998 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.025 0.975 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.362 -0.437 -15.732 20.012 hybrid contribution -0.383 0.447 2.497 2.566 sum -12.745 0.009 -13.235 18.374 Atomic orbital electron populations 1.23596 0.74513 1.05903 1.02598 1.86512 1.25204 1.32310 1.83306 1.24078 0.92555 0.81513 0.70977 1.90634 1.67431 1.37214 1.46805 1.22196 0.85700 0.96093 0.98215 0.84173 1.22711 0.99799 0.99758 0.94307 1.23259 0.90629 0.95971 0.96519 0.94532 1.62082 1.18175 1.22585 1.21605 1.22098 0.94140 0.90395 0.99681 1.21536 0.95806 0.99216 0.97089 1.18676 0.94114 0.92851 0.91873 1.21571 0.93530 1.34641 1.07340 0.92996 1.25740 0.99342 0.96141 0.97425 1.70012 1.27177 1.40425 1.18193 0.85705 0.80406 0.78436 0.77662 1.19826 1.21102 1.19574 1.21422 0.94177 0.99223 0.98423 1.22070 0.97549 0.97068 0.89335 1.23247 0.93746 1.01460 0.88396 1.63163 1.08415 1.02108 1.54864 0.84921 0.92153 0.91542 0.87957 0.91520 0.96553 0.88719 0.92547 0.92887 0.99799 0.93162 0.92265 0.94629 0.97458 0.90567 0.88982 0.88222 0.83273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.56 16 2 O -0.36 -7.01 10.56 -51.38 -0.54 -7.55 16 3 C 0.47 10.40 7.00 71.23 0.50 10.89 16 4 O -0.53 -14.26 15.34 21.95 0.34 -13.93 16 5 C 0.09 1.82 3.93 44.31 0.17 1.99 16 6 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 7 C -0.13 -2.88 4.97 31.47 0.16 -2.72 16 8 C 0.05 1.20 2.75 46.12 0.13 1.32 16 9 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 10 N -0.52 -16.59 4.50 -864.05 -3.88 -20.48 16 11 C 0.06 2.12 5.33 86.32 0.46 2.58 16 12 C -0.10 -3.98 5.31 30.65 0.16 -3.82 16 13 C 0.04 2.18 2.17 -11.43 -0.02 2.15 16 14 C -0.53 -29.49 8.57 25.60 0.22 -29.27 16 15 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 16 C 0.01 0.66 5.31 84.66 0.45 1.11 16 17 N -0.92 -53.26 11.38 21.45 0.24 -53.01 16 18 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 C -0.09 -4.43 5.13 30.67 0.16 -4.27 16 23 C 0.07 2.55 5.25 86.32 0.45 3.00 16 24 C 0.06 1.29 6.07 86.61 0.53 1.82 16 25 N -0.65 -13.83 7.39 -483.55 -3.57 -17.40 16 26 H 0.13 0.97 8.14 -2.39 -0.02 0.96 16 27 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 28 H 0.07 0.88 8.13 -2.39 -0.02 0.86 16 29 H 0.10 2.37 7.54 -2.39 -0.02 2.35 16 30 H 0.07 1.55 7.68 -2.39 -0.02 1.53 16 31 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.09 2.51 6.91 -2.39 -0.02 2.49 16 33 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 35 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 36 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 37 H 0.06 3.17 6.18 -2.39 -0.01 3.16 16 38 H 0.03 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 40 H 0.08 2.57 6.61 -2.39 -0.02 2.55 16 41 H 0.09 1.74 7.86 -2.39 -0.02 1.73 16 42 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.35 7.77 7.31 -89.70 -0.66 7.11 16 Total: -1.00 -63.43 336.18 -0.50 -63.93 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.34 Total: 16.33 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 4.56 Total: -13.66 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -7.21 Total: -90.89 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.21 Total: -21.48 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -63.43 -0.50 -63.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246800554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.879 kcal (2) G-P(sol) polarization free energy of solvation -63.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds