Wall clock time and date at job start Tue Mar 31 2020 05:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21277 * 119.99810 * 2 1 4 4 N 1.34773 * 119.99638 * 179.97438 * 2 1 3 5 5 C 1.46927 * 120.63516 * 359.97438 * 4 2 1 6 6 C 1.53192 * 108.77318 * 126.41107 * 5 4 2 7 7 C 1.53041 * 109.31320 * 54.63839 * 6 5 4 8 8 C 1.53033 * 109.53898 * 298.63305 * 7 6 5 9 9 H 1.09000 * 109.49457 * 301.41562 * 8 7 6 10 10 C 1.53001 * 109.49934 * 181.31773 * 8 7 6 11 11 N 1.46503 * 109.47064 * 175.16396 * 10 8 7 12 12 C 1.34772 * 119.99653 * 180.02562 * 11 10 8 13 13 O 1.21279 * 120.00403 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99771 * 179.97438 * 12 11 10 15 15 C 1.53001 * 109.47182 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47182 * 179.97438 * 15 14 12 17 17 H 1.07991 * 120.00165 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99682 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99729 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00233 * 359.97438 * 18 16 15 21 21 H 1.48509 * 109.47121 * 90.00033 * 20 18 16 22 22 H 1.48507 * 109.47257 * 209.99717 * 20 18 16 23 23 H 1.48493 * 109.47312 * 330.00087 * 20 18 16 24 24 C 1.46926 * 120.62904 * 180.02562 * 4 2 1 25 25 H 1.09009 * 109.47313 * 240.00385 * 1 2 3 26 26 H 1.09001 * 109.47409 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47194 * 119.99756 * 1 2 3 28 28 H 1.08997 * 109.58859 * 246.20187 * 5 4 2 29 29 H 1.09001 * 109.58530 * 6.48424 * 5 4 2 30 30 H 1.09005 * 109.49451 * 174.58740 * 6 5 4 31 31 H 1.09002 * 109.49733 * 294.68295 * 6 5 4 32 32 H 1.09002 * 109.46121 * 58.65084 * 7 6 5 33 33 H 1.09004 * 109.46035 * 178.62071 * 7 6 5 34 34 H 1.09000 * 109.46664 * 295.16128 * 10 8 7 35 35 H 1.08996 * 109.47170 * 55.15743 * 10 8 7 36 36 H 0.97003 * 119.99962 * 359.97438 * 11 10 8 37 37 H 1.09000 * 109.47349 * 299.99636 * 14 12 11 38 38 H 1.08996 * 109.47355 * 59.99784 * 14 12 11 39 39 H 1.09003 * 109.47171 * 300.00005 * 15 14 12 40 40 H 1.08996 * 109.47170 * 59.99649 * 15 14 12 41 41 H 0.97003 * 119.99905 * 180.02562 * 19 18 16 42 42 H 1.09006 * 109.58406 * 353.37631 * 24 4 2 43 43 H 1.09002 * 109.59019 * 113.79619 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4602 -2.4477 0.0017 6 6 1.9683 -3.3003 -1.1652 7 6 3.4897 -3.4352 -1.0688 8 6 4.1335 -2.0503 -1.1664 9 1 3.8494 -1.5827 -2.1091 10 6 5.6559 -2.1892 -1.1028 11 7 6.2750 -0.8780 -1.3118 12 6 7.6172 -0.7568 -1.2982 13 8 8.3125 -1.7330 -1.1124 14 6 8.2542 0.5919 -1.5138 15 6 9.7766 0.4528 -1.4514 16 6 10.4135 1.8013 -1.6676 17 1 9.7945 2.6707 -1.8326 18 6 11.7867 1.9253 -1.6538 19 7 12.3425 3.1023 -1.8420 20 14 12.8574 0.4219 -1.3663 21 1 13.1766 -0.2150 -2.6693 22 1 14.1165 0.8321 -0.6942 23 1 12.1304 -0.5466 -0.5069 24 6 3.6500 -1.1834 0.0011 25 1 -0.3634 -0.5138 0.8901 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 1.6425 -2.9687 0.9415 29 1 0.3918 -2.2657 -0.1140 30 1 1.5117 -4.2891 -1.1191 31 1 1.7046 -2.8209 -2.1080 32 1 3.7540 -3.8921 -0.1151 33 1 3.8511 -4.0619 -1.8841 34 1 5.9449 -2.5759 -0.1255 35 1 5.9907 -2.8771 -1.8792 36 1 5.7190 -0.0973 -1.4608 37 1 7.9648 0.9783 -2.4911 38 1 7.9197 1.2799 -0.7375 39 1 10.0663 0.0661 -0.4743 40 1 10.1107 -0.2352 -2.2280 41 1 13.3086 3.1895 -1.8326 42 1 4.0266 -0.1674 -0.1174 43 1 4.0105 -1.6016 0.9410 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261212595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:33 Heat of formation + Delta-G solvation = -95.414909 kcal Electronic energy + Delta-G solvation = -22098.286003 eV Core-core repulsion = 18756.481292 eV Total energy + Delta-G solvation = -3341.804711 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.61442 -39.25522 -37.89559 -35.19533 -33.42746 -33.14763 -31.80046 -31.16045 -30.04531 -26.95018 -25.58477 -25.22614 -22.66372 -21.08712 -21.02544 -19.52317 -19.41014 -17.49579 -17.09303 -16.45511 -15.94929 -15.82280 -15.67813 -15.31986 -14.85999 -14.45174 -14.05493 -13.78521 -13.64082 -13.61007 -13.30279 -13.11828 -12.88823 -12.55171 -12.50626 -12.38109 -11.97996 -11.59074 -11.39155 -11.31007 -11.17086 -10.98439 -10.91742 -10.13156 -10.10498 -10.00101 -9.74730 -9.20401 -9.12058 -9.03871 -8.84793 -8.46762 -5.98980 -3.97436 2.29791 2.60882 3.16980 3.40710 3.45809 3.47578 3.58388 4.13511 4.21817 4.38697 4.48571 4.53178 4.54494 4.71273 4.79968 4.90217 4.93545 5.03892 5.15135 5.27669 5.32888 5.36287 5.36431 5.42795 5.47279 5.54805 5.64573 5.71634 5.81954 5.95853 6.11161 6.14779 6.16270 6.64286 6.75455 7.02302 7.40931 7.48325 7.78720 7.83540 7.84469 8.54660 8.69684 9.04713 9.64059 11.13961 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027978 B = 0.003055 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.553357 B = 9163.346176 C = 9990.589016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.510 3.490 3 O -0.541 6.541 4 N -0.615 5.615 5 C 0.105 3.895 6 C -0.134 4.134 7 C -0.113 4.113 8 C -0.113 4.113 9 H 0.082 0.918 10 C 0.127 3.873 11 N -0.744 5.744 12 C 0.511 3.489 13 O -0.542 6.542 14 C -0.123 4.123 15 C 0.002 3.998 16 C -0.524 4.524 17 H 0.073 0.927 18 C 0.068 3.932 19 N -0.904 5.904 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.261 1.261 24 C 0.113 3.887 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.399 0.601 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.023 0.977 40 H 0.018 0.982 41 H 0.263 0.737 42 H 0.096 0.904 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.875 -14.456 2.976 32.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.298 3.702 3 O -0.418 6.418 4 N -0.349 5.349 5 C -0.018 4.018 6 C -0.173 4.173 7 C -0.152 4.152 8 C -0.132 4.132 9 H 0.100 0.900 10 C 0.002 3.998 11 N -0.398 5.398 12 C 0.299 3.701 13 O -0.418 6.418 14 C -0.163 4.163 15 C -0.036 4.036 16 C -0.562 4.562 17 H 0.091 0.909 18 C -0.133 4.133 19 N -0.543 5.543 20 Si 0.705 3.295 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.185 1.185 24 C -0.009 4.009 25 H 0.106 0.894 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.234 0.766 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.042 0.958 40 H 0.037 0.963 41 H 0.072 0.928 42 H 0.114 0.886 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -27.871 -14.506 3.117 31.574 hybrid contribution 0.304 -0.453 0.009 0.546 sum -27.567 -14.959 3.126 31.519 Atomic orbital electron populations 1.21945 0.91825 1.05541 1.03977 1.20850 0.90676 0.83051 0.75578 1.90754 1.70688 1.30949 1.49440 1.48164 1.06966 1.06041 1.73765 1.21796 0.96756 0.84095 0.99132 1.21913 0.96302 1.00263 0.98779 1.21504 0.94650 0.95943 1.03059 1.21778 0.94736 0.96990 0.99735 0.89987 1.21233 0.90196 0.86292 1.02060 1.46220 1.07487 1.10353 1.75741 1.21527 0.81134 0.92641 0.74764 1.90645 1.62224 1.40667 1.48283 1.21674 0.99782 0.91768 1.03105 1.19363 0.89000 0.97567 0.97665 1.21134 0.92129 0.93508 1.49426 0.90919 1.24981 0.98077 0.95815 0.94442 1.69921 1.10828 1.23083 1.50496 0.86785 0.79794 0.83793 0.79107 1.20272 1.21477 1.18533 1.21709 0.79035 1.02169 0.98028 0.89449 0.88933 0.89422 0.91109 0.89499 0.90308 0.91286 0.91195 0.90956 0.91565 0.91355 0.76623 0.89639 0.89542 0.95847 0.96315 0.92756 0.88598 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 8.67 36.01 0.31 -0.59 16 2 C 0.51 4.93 7.81 -10.99 -0.09 4.85 16 3 O -0.54 -7.89 16.50 5.56 0.09 -7.80 16 4 N -0.62 -4.87 2.97 -172.74 -0.51 -5.39 16 5 C 0.11 0.47 6.34 -3.71 -0.02 0.44 16 6 C -0.13 -0.58 6.08 -26.61 -0.16 -0.74 16 7 C -0.11 -0.68 5.17 -26.69 -0.14 -0.82 16 8 C -0.11 -0.92 2.38 -90.48 -0.22 -1.14 16 9 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 10 C 0.13 1.42 5.07 -4.04 -0.02 1.40 16 11 N -0.74 -10.15 5.33 -60.29 -0.32 -10.47 16 12 C 0.51 9.54 7.83 -10.99 -0.09 9.45 16 13 O -0.54 -12.19 15.98 5.56 0.09 -12.10 16 14 C -0.12 -2.49 5.64 -27.88 -0.16 -2.65 16 15 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 16 C -0.52 -15.39 9.66 -34.44 -0.33 -15.72 16 17 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -28.58 13.96 55.43 0.77 -27.81 16 20 Si 0.88 23.02 27.47 -169.99 -4.67 18.35 16 21 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.26 -6.81 6.54 56.52 0.37 -6.44 16 24 C 0.11 1.04 5.52 -3.69 -0.02 1.02 16 25 H 0.09 0.28 7.94 -51.92 -0.41 -0.13 16 26 H 0.09 0.53 8.12 -51.93 -0.42 0.10 16 27 H 0.09 0.29 7.70 -51.93 -0.40 -0.11 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.21 5.93 -51.93 -0.31 -0.10 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.40 4.67 7.70 -40.82 -0.31 4.36 16 37 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 39 H 0.02 0.62 7.15 -51.93 -0.37 0.25 16 40 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 41 H 0.26 7.77 8.31 -40.82 -0.34 7.44 16 42 H 0.10 1.09 6.21 -51.93 -0.32 0.77 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 346.06 15.07 5.21 5.21 Total: -1.00 -37.43 346.06 -7.63 -45.06 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -7.18 Total: -2.48 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -1.12 Total: -2.57 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: -0.06 Total: -43.67 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: 0.18 Total: -19.91 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.67 Total: 18.35 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.43 -7.63 -45.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261212595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.358 kcal (2) G-P(sol) polarization free energy of solvation -37.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds