Wall clock time and date at job start Tue Mar 31 2020 05:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21277 * 119.99810 * 2 1 4 4 N 1.34773 * 119.99638 * 179.97438 * 2 1 3 5 5 C 1.46927 * 120.63516 * 359.97438 * 4 2 1 6 6 C 1.53192 * 108.77318 * 126.41107 * 5 4 2 7 7 C 1.53041 * 109.31320 * 54.63839 * 6 5 4 8 8 C 1.53033 * 109.53898 * 298.63305 * 7 6 5 9 9 H 1.09000 * 109.49457 * 301.41562 * 8 7 6 10 10 C 1.53001 * 109.49934 * 181.31773 * 8 7 6 11 11 N 1.46503 * 109.47064 * 175.16396 * 10 8 7 12 12 C 1.34772 * 119.99653 * 180.02562 * 11 10 8 13 13 O 1.21279 * 120.00403 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99771 * 179.97438 * 12 11 10 15 15 C 1.53001 * 109.47182 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47182 * 179.97438 * 15 14 12 17 17 H 1.07991 * 120.00165 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99682 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99729 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00233 * 359.97438 * 18 16 15 21 21 H 1.48509 * 109.47121 * 90.00033 * 20 18 16 22 22 H 1.48507 * 109.47257 * 209.99717 * 20 18 16 23 23 H 1.48493 * 109.47312 * 330.00087 * 20 18 16 24 24 C 1.46926 * 120.62904 * 180.02562 * 4 2 1 25 25 H 1.09009 * 109.47313 * 240.00385 * 1 2 3 26 26 H 1.09001 * 109.47409 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47194 * 119.99756 * 1 2 3 28 28 H 1.08997 * 109.58859 * 246.20187 * 5 4 2 29 29 H 1.09001 * 109.58530 * 6.48424 * 5 4 2 30 30 H 1.09005 * 109.49451 * 174.58740 * 6 5 4 31 31 H 1.09002 * 109.49733 * 294.68295 * 6 5 4 32 32 H 1.09002 * 109.46121 * 58.65084 * 7 6 5 33 33 H 1.09004 * 109.46035 * 178.62071 * 7 6 5 34 34 H 1.09000 * 109.46664 * 295.16128 * 10 8 7 35 35 H 1.08996 * 109.47170 * 55.15743 * 10 8 7 36 36 H 0.97003 * 119.99962 * 359.97438 * 11 10 8 37 37 H 1.09000 * 109.47349 * 299.99636 * 14 12 11 38 38 H 1.08996 * 109.47355 * 59.99784 * 14 12 11 39 39 H 1.09003 * 109.47171 * 300.00005 * 15 14 12 40 40 H 1.08996 * 109.47170 * 59.99649 * 15 14 12 41 41 H 0.97003 * 119.99905 * 180.02562 * 19 18 16 42 42 H 1.09006 * 109.58406 * 353.37631 * 24 4 2 43 43 H 1.09002 * 109.59019 * 113.79619 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4602 -2.4477 0.0017 6 6 1.9683 -3.3003 -1.1652 7 6 3.4897 -3.4352 -1.0688 8 6 4.1335 -2.0503 -1.1664 9 1 3.8494 -1.5827 -2.1091 10 6 5.6559 -2.1892 -1.1028 11 7 6.2750 -0.8780 -1.3118 12 6 7.6172 -0.7568 -1.2982 13 8 8.3125 -1.7330 -1.1124 14 6 8.2542 0.5919 -1.5138 15 6 9.7766 0.4528 -1.4514 16 6 10.4135 1.8013 -1.6676 17 1 9.7945 2.6707 -1.8326 18 6 11.7867 1.9253 -1.6538 19 7 12.3425 3.1023 -1.8420 20 14 12.8574 0.4219 -1.3663 21 1 13.1766 -0.2150 -2.6693 22 1 14.1165 0.8321 -0.6942 23 1 12.1304 -0.5466 -0.5069 24 6 3.6500 -1.1834 0.0011 25 1 -0.3634 -0.5138 0.8901 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 1.6425 -2.9687 0.9415 29 1 0.3918 -2.2657 -0.1140 30 1 1.5117 -4.2891 -1.1191 31 1 1.7046 -2.8209 -2.1080 32 1 3.7540 -3.8921 -0.1151 33 1 3.8511 -4.0619 -1.8841 34 1 5.9449 -2.5759 -0.1255 35 1 5.9907 -2.8771 -1.8792 36 1 5.7190 -0.0973 -1.4608 37 1 7.9648 0.9783 -2.4911 38 1 7.9197 1.2799 -0.7375 39 1 10.0663 0.0661 -0.4743 40 1 10.1107 -0.2352 -2.2280 41 1 13.3086 3.1895 -1.8326 42 1 4.0266 -0.1674 -0.1174 43 1 4.0105 -1.6016 0.9410 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261212595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:33 Heat of formation + Delta-G solvation = -122.592299 kcal Electronic energy + Delta-G solvation = -22099.464503 eV Core-core repulsion = 18756.481292 eV Total energy + Delta-G solvation = -3342.983211 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.34104 -40.61915 -38.70601 -36.23983 -35.53514 -34.00589 -33.30529 -32.33058 -30.66836 -28.47904 -26.53002 -26.14920 -23.60185 -22.63923 -21.86475 -20.95981 -19.99049 -19.21629 -18.12129 -17.51609 -17.18691 -16.96598 -16.58202 -16.39445 -16.23572 -15.71225 -15.07179 -14.89521 -14.66294 -14.59999 -14.30724 -14.19957 -14.06199 -13.65124 -13.42426 -13.39159 -13.01660 -12.91740 -12.72492 -12.16423 -12.11319 -11.98448 -11.89103 -11.79020 -11.72829 -11.57957 -11.42307 -10.86783 -10.79603 -10.76087 -10.10886 -9.67785 -8.32836 -6.36344 1.32681 1.34120 1.49876 1.61045 1.65918 2.02476 2.24014 2.34248 3.02481 3.57685 3.65519 3.74336 3.91493 4.00593 4.08647 4.21167 4.30752 4.37461 4.44198 4.45593 4.51823 4.60328 4.64440 4.69412 4.73603 4.82715 4.87327 4.95835 5.00824 5.10234 5.15903 5.22586 5.30283 5.42319 5.42454 5.48248 5.51694 5.59489 6.21964 6.42522 6.51342 6.69973 7.16107 7.26150 7.28968 8.83120 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027978 B = 0.003055 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.553357 B = 9163.346176 C = 9990.589016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.498 3.502 3 O -0.604 6.604 4 N -0.611 5.611 5 C 0.099 3.901 6 C -0.129 4.129 7 C -0.113 4.113 8 C -0.097 4.097 9 H 0.079 0.921 10 C 0.125 3.875 11 N -0.723 5.723 12 C 0.516 3.484 13 O -0.583 6.583 14 C -0.120 4.120 15 C 0.007 3.993 16 C -0.532 4.532 17 H 0.047 0.953 18 C 0.012 3.988 19 N -0.945 5.945 20 Si 0.942 3.058 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.261 1.261 24 C 0.111 3.889 25 H 0.113 0.887 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.082 0.918 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.411 0.589 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.011 0.989 40 H 0.011 0.989 41 H 0.268 0.732 42 H 0.068 0.932 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.274 -17.030 3.092 35.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.289 3.711 3 O -0.486 6.486 4 N -0.344 5.344 5 C -0.023 4.023 6 C -0.167 4.167 7 C -0.151 4.151 8 C -0.117 4.117 9 H 0.097 0.903 10 C 0.002 3.998 11 N -0.376 5.376 12 C 0.304 3.696 13 O -0.463 6.463 14 C -0.160 4.160 15 C -0.031 4.031 16 C -0.570 4.570 17 H 0.065 0.935 18 C -0.186 4.186 19 N -0.585 5.585 20 Si 0.766 3.234 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.013 4.013 25 H 0.132 0.868 26 H 0.102 0.898 27 H 0.132 0.868 28 H 0.100 0.900 29 H 0.133 0.867 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.247 0.753 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -30.345 -17.111 3.226 34.986 hybrid contribution 0.967 0.379 -0.024 1.039 sum -29.378 -16.732 3.202 33.960 Atomic orbital electron populations 1.21963 0.88116 1.05923 1.06412 1.21736 0.92524 0.82478 0.74356 1.90724 1.72175 1.33192 1.52519 1.48300 1.06422 1.07161 1.72519 1.22131 0.97962 0.82321 0.99852 1.21904 0.94757 1.01521 0.98485 1.21539 0.95963 0.94037 1.03571 1.21648 0.92394 0.98548 0.99072 0.90251 1.21421 0.92106 0.84568 1.01737 1.46029 1.05937 1.12104 1.73538 1.21095 0.82516 0.91237 0.74762 1.90628 1.63493 1.41494 1.50701 1.21511 0.96554 0.93447 1.04478 1.19205 0.92503 0.94957 0.96440 1.21441 0.92307 0.94421 1.48823 0.93503 1.25854 0.99671 0.98748 0.94317 1.70036 1.11513 1.25196 1.51772 0.85769 0.78161 0.79997 0.79427 1.19173 1.20240 1.18504 1.21596 0.80453 1.00743 0.98473 0.86830 0.89755 0.86789 0.89976 0.86707 0.87819 0.91547 0.90693 0.90515 0.91922 0.91514 0.75312 0.88206 0.88458 0.97089 0.97091 0.92320 0.91357 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 8.67 71.24 0.62 -0.67 16 2 C 0.50 9.15 7.81 87.66 0.68 9.84 16 3 O -0.60 -18.16 16.50 -3.02 -0.05 -18.21 16 4 N -0.61 -8.61 2.97 -818.81 -2.43 -11.04 16 5 C 0.10 0.52 6.34 86.36 0.55 1.06 16 6 C -0.13 -0.63 6.08 30.67 0.19 -0.44 16 7 C -0.11 -1.04 5.17 30.62 0.16 -0.88 16 8 C -0.10 -1.44 2.38 -10.70 -0.03 -1.47 16 9 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 10 C 0.13 2.69 5.07 86.38 0.44 3.13 16 11 N -0.72 -19.33 5.33 -463.06 -2.47 -21.80 16 12 C 0.52 19.11 7.83 87.66 0.69 19.80 16 13 O -0.58 -26.19 15.98 -3.02 -0.05 -26.24 16 14 C -0.12 -4.85 5.64 29.85 0.17 -4.68 16 15 C 0.01 0.36 3.33 29.85 0.10 0.46 16 16 C -0.53 -31.84 9.66 25.60 0.25 -31.59 16 17 H 0.05 2.97 7.99 -2.92 -0.02 2.94 16 18 C 0.01 0.71 5.47 84.65 0.46 1.17 16 19 N -0.94 -60.63 13.96 21.45 0.30 -60.33 16 20 Si 0.94 47.80 27.47 68.60 1.88 49.69 16 21 H -0.27 -13.01 7.11 99.48 0.71 -12.31 16 22 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 23 H -0.26 -13.13 6.54 99.48 0.65 -12.48 16 24 C 0.11 1.95 5.52 86.38 0.48 2.43 16 25 H 0.11 0.30 7.94 -2.38 -0.02 0.28 16 26 H 0.08 0.83 8.12 -2.39 -0.02 0.81 16 27 H 0.11 0.30 7.70 -2.39 -0.02 0.28 16 28 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.11 0.00 5.93 -2.39 -0.01 -0.01 16 30 H 0.10 0.09 8.14 -2.38 -0.02 0.07 16 31 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.41 9.41 7.70 -92.71 -0.71 8.69 16 37 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 38 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 39 H 0.01 0.58 7.15 -2.39 -0.02 0.56 16 40 H 0.01 0.57 7.53 -2.39 -0.02 0.55 16 41 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 42 H 0.07 1.60 6.21 -2.38 -0.01 1.58 16 43 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -83.76 346.06 2.15 -81.60 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 0.22 Total: 8.17 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 4.75 Total: -1.84 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -4.60 Total: -93.17 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -0.10 Total: -44.45 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 1.88 Total: 49.69 kcal Total: -83.76 2.15 -81.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261212595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.989 kcal (2) G-P(sol) polarization free energy of solvation -83.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds