Wall clock time and date at job start Tue Mar 31 2020 05:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21280 * 119.99596 * 2 1 4 4 N 1.34781 * 120.00231 * 179.97438 * 2 1 3 5 5 C 1.46501 * 119.99584 * 354.89489 * 4 2 1 6 6 C 1.46496 * 119.99660 * 174.89380 * 4 2 1 7 7 C 1.53047 * 109.45971 * 120.00274 * 6 4 2 8 8 C 1.53188 * 109.31302 * 181.38181 * 7 6 4 9 9 N 1.46918 * 108.89672 * 305.29207 * 8 7 6 10 10 C 1.34772 * 120.63400 * 233.68500 * 9 8 7 11 11 O 1.21284 * 119.99911 * 359.97438 * 10 9 8 12 12 C 1.50705 * 120.00159 * 180.02562 * 10 9 8 13 13 C 1.53000 * 109.46828 * 180.02562 * 12 10 9 14 14 C 1.50705 * 109.46828 * 179.97438 * 13 12 10 15 15 H 1.07996 * 119.99765 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00001 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99624 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99971 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46907 * 90.00269 * 18 16 14 20 20 H 1.48499 * 109.47403 * 210.00078 * 18 16 14 21 21 H 1.48495 * 109.47461 * 330.00346 * 18 16 14 22 22 C 1.47205 * 118.55340 * 53.53955 * 9 8 7 23 23 C 1.53041 * 109.45835 * 240.06665 * 6 4 2 24 24 H 1.09005 * 109.47150 * 274.61868 * 1 2 3 25 25 H 1.08994 * 109.47727 * 34.62087 * 1 2 3 26 26 H 1.09004 * 109.46968 * 154.62588 * 1 2 3 27 27 H 1.09001 * 109.47037 * 275.48097 * 5 4 2 28 28 H 1.08999 * 109.47275 * 35.49082 * 5 4 2 29 29 H 1.09008 * 109.46434 * 155.49088 * 5 4 2 30 30 H 1.08998 * 109.45309 * 0.03901 * 6 4 2 31 31 H 1.09000 * 109.49877 * 61.42909 * 7 6 4 32 32 H 1.09001 * 109.52051 * 301.35196 * 7 6 4 33 33 H 1.09005 * 109.58463 * 65.15333 * 8 7 6 34 34 H 1.08998 * 109.58737 * 185.43157 * 8 7 6 35 35 H 1.08996 * 109.46591 * 299.99212 * 12 10 9 36 36 H 1.08991 * 109.47425 * 59.99397 * 12 10 9 37 37 H 1.09003 * 109.47082 * 299.99311 * 13 12 10 38 38 H 1.08991 * 109.47661 * 59.99479 * 13 12 10 39 39 H 0.97006 * 119.99302 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.53486 * 186.67351 * 22 9 8 41 41 H 1.09004 * 109.68015 * 66.36871 * 22 9 8 42 42 H 1.08995 * 109.49971 * 298.56651 * 23 6 4 43 43 H 1.09001 * 109.49918 * 58.66767 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 1.4528 -2.4334 0.1140 6 6 3.6416 -1.1696 -0.1124 7 6 4.2475 -1.8352 1.1254 8 6 5.7755 -1.8050 1.0200 9 7 6.1770 -2.4226 -0.2511 10 6 7.0699 -3.4319 -0.2724 11 8 7.5504 -3.8384 0.7644 12 6 7.4721 -4.0547 -1.5844 13 6 8.4889 -5.1692 -1.3295 14 6 8.8906 -5.7924 -2.6415 15 1 8.4631 -5.4301 -3.5647 16 6 9.8040 -6.8250 -2.6632 17 7 10.3250 -7.2658 -1.5389 18 14 10.3014 -7.5979 -4.2894 19 1 11.4768 -6.8772 -4.8410 20 1 10.6524 -9.0245 -4.0727 21 1 9.1705 -7.5066 -5.2474 22 6 5.5806 -1.9171 -1.4984 23 6 4.0548 -1.9460 -1.3649 24 1 -0.3634 0.0828 1.0244 25 1 -0.3634 0.8456 -0.5838 26 1 -0.3633 -0.9286 -0.4404 27 1 1.2662 -2.6522 1.1654 28 1 0.5030 -2.3550 -0.4151 29 1 2.0476 -3.2350 -0.3239 30 1 4.0017 -0.1435 -0.1859 31 1 3.9074 -2.8689 1.1860 32 1 3.9337 -1.2960 2.0193 33 1 6.1235 -0.7725 1.0507 34 1 6.2101 -2.3618 1.8502 35 1 6.5918 -4.4716 -2.0736 36 1 7.9184 -3.2948 -2.2257 37 1 9.3694 -4.7527 -0.8400 38 1 8.0422 -5.9290 -0.6884 39 1 10.9678 -7.9921 -1.5543 40 1 5.8866 -2.5500 -2.3314 41 1 5.9126 -0.8941 -1.6757 42 1 3.7165 -2.9787 -1.2809 43 1 3.6039 -1.4853 -2.2438 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324025884.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:33 Heat of formation + Delta-G solvation = -103.824592 kcal Electronic energy + Delta-G solvation = -22557.333471 eV Core-core repulsion = 19215.164089 eV Total energy + Delta-G solvation = -3342.169382 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.52649 -40.64566 -38.51967 -36.33371 -35.60168 -33.59565 -32.83179 -31.98809 -30.24465 -28.09855 -27.70639 -25.70341 -24.51030 -23.38130 -21.72964 -20.23904 -19.80650 -18.84852 -18.09724 -17.73890 -16.88352 -16.88089 -16.61174 -16.51963 -16.37369 -15.19251 -15.10261 -14.67808 -14.60315 -14.45785 -14.20392 -14.09640 -13.74981 -13.69487 -13.31248 -13.17620 -13.03238 -12.87186 -12.80547 -12.66095 -12.47435 -12.29240 -11.93672 -11.91838 -11.62892 -11.54923 -11.29383 -10.87941 -10.67312 -10.56235 -9.71039 -9.66863 -8.17292 -6.31373 1.43021 1.45719 1.56571 1.60756 1.66083 1.97728 2.05571 2.43907 3.15878 3.52299 3.68119 3.81118 3.91744 4.02445 4.05697 4.22182 4.25870 4.34938 4.41263 4.47883 4.53015 4.57733 4.58517 4.71812 4.72624 4.78202 4.82708 4.88525 4.93447 5.00325 5.10469 5.17196 5.23899 5.48882 5.51695 5.59770 5.63131 5.85831 6.17978 6.36794 6.42189 6.87251 7.15869 7.24854 7.39049 8.95501 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032472 B = 0.003132 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.075986 B = 8938.355878 C = 9297.719450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.502 3.498 3 O -0.601 6.601 4 N -0.610 5.610 5 C 0.066 3.934 6 C 0.140 3.860 7 C -0.126 4.126 8 C 0.110 3.890 9 N -0.613 5.613 10 C 0.512 3.488 11 O -0.590 6.590 12 C -0.115 4.115 13 C 0.043 3.957 14 C -0.541 4.541 15 H 0.077 0.923 16 C -0.008 4.008 17 N -0.939 5.939 18 Si 0.974 3.026 19 H -0.273 1.273 20 H -0.287 1.287 21 H -0.253 1.253 22 C 0.105 3.895 23 C -0.132 4.132 24 H 0.107 0.893 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.102 0.898 37 H -0.020 1.020 38 H -0.018 1.018 39 H 0.262 0.738 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.804 13.064 -0.386 27.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.294 3.706 3 O -0.483 6.483 4 N -0.342 5.342 5 C -0.076 4.076 6 C 0.036 3.964 7 C -0.165 4.165 8 C -0.013 4.013 9 N -0.347 5.347 10 C 0.303 3.697 11 O -0.470 6.470 12 C -0.155 4.155 13 C 0.005 3.995 14 C -0.579 4.579 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.579 5.579 18 Si 0.798 3.202 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.177 1.177 22 C -0.018 4.018 23 C -0.171 4.171 24 H 0.125 0.875 25 H 0.111 0.889 26 H 0.128 0.872 27 H 0.085 0.915 28 H 0.119 0.881 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.120 0.880 37 H -0.002 1.002 38 H 0.001 0.999 39 H 0.071 0.929 40 H 0.122 0.878 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -23.163 13.266 0.225 26.694 hybrid contribution 0.870 -0.629 -0.069 1.076 sum -22.293 12.636 0.157 25.626 Atomic orbital electron populations 1.22002 0.88371 1.06301 1.06028 1.21640 0.92340 0.82478 0.74186 1.90693 1.72018 1.33005 1.52590 1.48094 1.06512 1.07512 1.72036 1.22121 0.98124 0.84312 1.03010 1.20967 0.80063 1.00617 0.94740 1.22114 0.93942 1.01815 0.98616 1.21532 0.94866 0.98278 0.86590 1.48326 1.42818 1.34738 1.08797 1.21396 0.77717 0.78747 0.91857 1.90642 1.56021 1.63468 1.36837 1.21639 1.01211 0.99133 0.93503 1.18690 0.92783 0.92439 0.95565 1.21711 1.24770 1.17563 0.93867 0.90462 1.26148 0.96218 0.97618 1.00519 1.70189 1.30528 1.28253 1.28909 0.85319 0.79069 0.77081 0.78769 1.19839 1.21257 1.17682 1.21999 0.92725 1.01212 0.85822 1.22210 0.95006 1.01734 0.98176 0.87479 0.88934 0.87186 0.91536 0.88051 0.90448 0.89719 0.91109 0.90123 0.90559 0.91037 0.87648 0.87984 1.00203 0.99936 0.92888 0.87803 0.89771 0.90361 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 9.79 71.24 0.70 -0.67 16 2 C 0.50 8.97 7.77 87.66 0.68 9.66 16 3 O -0.60 -16.84 16.44 -3.03 -0.05 -16.89 16 4 N -0.61 -9.11 2.76 -822.42 -2.27 -11.38 16 5 C 0.07 0.53 9.28 127.77 1.19 1.72 16 6 C 0.14 2.55 2.47 45.02 0.11 2.66 16 7 C -0.13 -2.49 5.34 30.67 0.16 -2.32 16 8 C 0.11 2.82 6.42 86.36 0.55 3.38 16 9 N -0.61 -17.40 2.98 -818.19 -2.44 -19.84 16 10 C 0.51 20.20 7.70 87.66 0.68 20.87 16 11 O -0.59 -29.42 15.39 -3.04 -0.05 -29.47 16 12 C -0.12 -4.62 3.99 29.85 0.12 -4.50 16 13 C 0.04 2.39 4.26 29.85 0.13 2.52 16 14 C -0.54 -30.61 9.11 25.60 0.23 -30.37 16 15 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 16 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 17 N -0.94 -59.67 13.29 21.45 0.28 -59.39 16 18 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 20 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 21 H -0.25 -10.51 7.11 99.48 0.71 -9.81 16 22 C 0.10 2.09 6.35 86.31 0.55 2.64 16 23 C -0.13 -2.13 5.32 30.67 0.16 -1.97 16 24 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.11 0.27 5.82 -2.39 -0.01 0.26 16 27 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.10 0.28 5.89 -2.39 -0.01 0.26 16 29 H 0.08 0.68 6.47 -2.38 -0.02 0.66 16 30 H 0.08 1.91 6.91 -2.39 -0.02 1.90 16 31 H 0.07 1.42 7.72 -2.39 -0.02 1.40 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.07 2.20 7.00 -2.39 -0.02 2.19 16 35 H 0.11 3.64 7.70 -2.39 -0.02 3.62 16 36 H 0.10 3.61 7.96 -2.39 -0.02 3.59 16 37 H -0.02 -1.30 8.10 -2.39 -0.02 -1.32 16 38 H -0.02 -1.12 8.10 -2.39 -0.02 -1.14 16 39 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 40 H 0.10 1.97 5.97 -2.39 -0.01 1.95 16 41 H 0.08 1.48 8.14 -2.38 -0.02 1.47 16 42 H 0.08 1.23 6.72 -2.39 -0.02 1.21 16 43 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -83.57 342.40 4.22 -79.35 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 0.99 Total: 7.95 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 5.72 Total: 3.63 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -4.43 Total: -90.61 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -0.10 Total: -46.36 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -83.57 4.22 -79.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324025884.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.471 kcal (2) G-P(sol) polarization free energy of solvation -83.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds