Wall clock time and date at job start Tue Mar 31 2020 05:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00193 * 2 1 4 4 C 1.34776 * 120.00220 * 179.97438 * 2 1 3 5 5 O 1.21282 * 119.99851 * 0.02562 * 4 2 1 6 6 C 1.50702 * 120.00428 * 179.97438 * 4 2 1 7 7 C 1.52995 * 109.47209 * 180.02562 * 6 4 2 8 8 C 1.52995 * 109.47085 * 180.02562 * 7 6 4 9 9 C 1.52992 * 109.47534 * 299.99983 * 8 7 6 10 10 C 1.50695 * 109.47750 * 179.97438 * 9 8 7 11 11 O 1.21297 * 119.99376 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00407 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00139 * 0.02562 * 12 10 9 14 14 C 1.37097 * 120.00186 * 179.72445 * 12 10 9 15 15 H 1.08006 * 119.99688 * 22.64511 * 14 12 10 16 16 C 1.38947 * 120.00324 * 202.64604 * 14 12 10 17 17 N 1.31408 * 119.99970 * 10.45646 * 16 14 12 18 18 Si 1.86809 * 120.00153 * 190.45871 * 16 14 12 19 19 H 1.48496 * 109.46914 * 89.99713 * 18 16 14 20 20 H 1.48500 * 109.46792 * 210.00094 * 18 16 14 21 21 H 1.48499 * 109.46895 * 329.99840 * 18 16 14 22 22 C 1.53009 * 109.46897 * 59.99805 * 9 8 7 23 23 C 1.52995 * 109.47188 * 300.00407 * 22 9 8 24 24 H 1.08999 * 109.47112 * 270.00079 * 1 2 3 25 25 H 1.09004 * 109.47155 * 30.00090 * 1 2 3 26 26 H 1.08996 * 109.47193 * 149.99673 * 1 2 3 27 27 H 1.08991 * 109.47216 * 269.99835 * 3 2 1 28 28 H 1.08998 * 109.46887 * 30.00152 * 3 2 1 29 29 H 1.09006 * 109.47003 * 149.99747 * 3 2 1 30 30 H 1.08997 * 109.46487 * 60.00224 * 6 4 2 31 31 H 1.09009 * 109.47285 * 60.00159 * 7 6 4 32 32 H 1.09006 * 109.47591 * 300.00346 * 7 6 4 33 33 H 1.09007 * 109.47104 * 179.97438 * 8 7 6 34 34 H 1.09001 * 109.46983 * 60.00314 * 8 7 6 35 35 H 1.09001 * 109.47256 * 300.00164 * 9 8 7 36 36 H 1.09005 * 109.47035 * 93.35064 * 13 12 10 37 37 H 1.08993 * 109.47255 * 213.35053 * 13 12 10 38 38 H 1.09005 * 109.47094 * 333.35155 * 13 12 10 39 39 H 0.97007 * 119.99964 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.46874 * 60.00126 * 22 9 8 41 41 H 1.09002 * 109.46869 * 179.97438 * 22 9 8 42 42 H 1.09009 * 109.46948 * 300.00036 * 23 22 9 43 43 H 1.08999 * 109.47587 * 179.97438 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6459 -1.1672 -0.0001 7 6 4.1559 -2.6097 0.0001 8 6 5.6858 -2.6097 0.0001 9 6 6.1959 -1.8886 -1.2491 10 6 7.7029 -1.8881 -1.2487 11 8 8.3093 -2.4133 -0.3389 12 7 8.3768 -1.3049 -2.2597 13 6 7.6445 -0.6711 -3.3588 14 6 9.7478 -1.2995 -2.2566 15 1 10.2894 -2.0392 -1.6855 16 6 10.4405 -0.3425 -2.9880 17 7 9.7971 0.6758 -3.5132 18 14 12.2865 -0.5035 -3.2247 19 1 12.5612 -1.2850 -4.4572 20 1 12.8890 0.8479 -3.3508 21 1 12.8767 -1.2013 -2.0543 22 6 5.6859 -0.4460 -1.2492 23 6 4.1560 -0.4460 -1.2492 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3633 -0.8899 -0.5139 27 1 2.3792 1.5833 -1.0276 28 1 1.6084 2.0283 0.5139 29 1 3.1499 1.1383 0.5139 30 1 4.0095 -0.6528 0.8895 31 1 3.7922 -3.1238 -0.8897 32 1 3.7928 -3.1234 0.8903 33 1 6.0492 -3.6374 0.0007 34 1 6.0491 -2.0959 0.8901 35 1 5.8327 -2.4025 -2.1391 36 1 7.5148 0.3899 -3.1449 37 1 8.2063 -0.7888 -4.2854 38 1 6.6673 -1.1426 -3.4640 39 1 10.2807 1.3437 -4.0241 40 1 6.0492 0.0678 -0.3592 41 1 6.0497 0.0678 -2.1390 42 1 3.7927 -0.9600 -2.1393 43 1 3.7926 0.5816 -1.2489 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330790319.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:41 Heat of formation + Delta-G solvation = -68.119630 kcal Electronic energy + Delta-G solvation = -23318.996057 eV Core-core repulsion = 19978.374959 eV Total energy + Delta-G solvation = -3340.621098 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.48557 -38.96147 -36.67399 -35.73633 -34.67420 -31.92848 -31.03122 -30.37332 -28.09860 -26.64781 -26.16472 -24.75299 -22.96727 -22.31167 -20.24105 -19.19820 -18.62482 -16.95886 -16.83997 -16.25368 -15.99526 -15.79970 -14.97884 -14.44796 -14.28810 -13.98589 -13.78835 -13.62583 -13.16344 -12.99246 -12.82593 -12.70987 -12.39416 -12.19515 -12.00030 -11.72585 -11.62617 -11.32091 -11.23132 -11.04800 -10.88743 -10.84890 -10.61009 -10.33543 -10.28083 -10.06276 -9.73555 -9.61384 -8.97764 -8.85463 -8.24563 -7.64383 -6.27904 -3.84854 2.57916 2.87745 3.17794 3.26129 3.31957 3.93738 4.16326 4.40419 4.76596 4.84330 4.88594 4.92985 5.05714 5.08433 5.15620 5.33753 5.38912 5.43407 5.47566 5.53045 5.58178 5.67250 5.70737 5.77733 5.81726 6.10174 6.17422 6.22009 6.24780 6.32658 6.42946 6.44755 6.52688 6.71860 6.81881 6.91805 7.18266 7.25404 7.59121 8.09361 8.17826 8.53154 9.23368 9.47855 10.04531 10.75296 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033578 B = 0.003901 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.669669 B = 7176.535907 C = 7721.909275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.626 5.626 3 C 0.074 3.926 4 C 0.519 3.481 5 O -0.541 6.541 6 C -0.105 4.105 7 C -0.096 4.096 8 C -0.093 4.093 9 C -0.097 4.097 10 C 0.451 3.549 11 O -0.591 6.591 12 N -0.449 5.449 13 C 0.113 3.887 14 C -0.304 4.304 15 H 0.097 0.903 16 C 0.030 3.970 17 N -0.887 5.887 18 Si 0.925 3.075 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.270 1.270 22 C -0.119 4.119 23 C -0.117 4.117 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.028 0.972 39 H 0.266 0.734 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.914 4.000 2.715 16.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.360 5.360 3 C -0.068 4.068 4 C 0.307 3.693 5 O -0.417 6.417 6 C -0.126 4.126 7 C -0.134 4.134 8 C -0.131 4.131 9 C -0.119 4.119 10 C 0.239 3.761 11 O -0.476 6.476 12 N -0.167 5.167 13 C -0.031 4.031 14 C -0.432 4.432 15 H 0.115 0.885 16 C -0.173 4.173 17 N -0.527 5.527 18 Si 0.752 3.248 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.194 1.194 22 C -0.156 4.156 23 C -0.155 4.155 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.877 3.364 3.021 16.508 hybrid contribution 0.832 0.346 -0.328 0.959 sum -15.044 3.711 2.692 15.727 Atomic orbital electron populations 1.21606 0.79592 1.02978 1.01611 1.47788 1.06908 1.06681 1.74648 1.22020 0.97576 0.85049 1.02197 1.20973 0.90543 0.82838 0.74899 1.90668 1.70545 1.31086 1.49440 1.21396 0.90089 1.00068 1.01068 1.21384 0.95701 0.93450 1.02877 1.21281 0.92880 1.01286 0.97659 1.21151 0.94479 0.96865 0.99378 1.20075 0.88417 0.84566 0.83011 1.90502 1.70070 1.50037 1.36947 1.43577 1.06130 1.49024 1.17988 1.21619 0.92794 0.97272 0.91385 1.19677 0.80619 1.13351 1.29590 0.88497 1.25308 1.00227 0.94359 0.97382 1.69985 1.36324 1.10960 1.35390 0.85936 0.82544 0.77448 0.78846 1.20460 1.20989 1.19425 1.21775 0.93436 0.96323 1.04106 1.21803 0.96900 1.00445 0.96307 0.92982 0.91388 0.90635 0.91843 0.91257 0.90223 0.88533 0.91454 0.91518 0.91218 0.91477 0.90261 0.92015 0.91736 0.95319 0.92393 0.91614 0.89427 0.91542 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 10.44 59.84 0.62 1.35 16 2 N -0.63 -6.41 3.27 -189.52 -0.62 -7.03 16 3 C 0.07 0.54 8.80 59.85 0.53 1.07 16 4 C 0.52 6.86 7.08 -10.98 -0.08 6.78 16 5 O -0.54 -9.00 15.56 5.56 0.09 -8.92 16 6 C -0.11 -1.31 1.72 -91.78 -0.16 -1.47 16 7 C -0.10 -1.37 4.49 -26.74 -0.12 -1.49 16 8 C -0.09 -1.55 4.49 -26.74 -0.12 -1.67 16 9 C -0.10 -1.75 1.72 -91.77 -0.16 -1.91 16 10 C 0.45 10.89 7.03 -10.99 -0.08 10.82 16 11 O -0.59 -16.41 15.68 5.54 0.09 -16.32 16 12 N -0.45 -11.39 3.02 -122.20 -0.37 -11.75 16 13 C 0.11 2.46 7.04 59.84 0.42 2.88 16 14 C -0.30 -8.50 9.29 -14.93 -0.14 -8.64 16 15 H 0.10 2.86 7.40 -52.48 -0.39 2.47 16 16 C 0.03 0.78 5.15 -17.47 -0.09 0.69 16 17 N -0.89 -23.30 10.54 55.50 0.59 -22.71 16 18 Si 0.93 20.81 29.57 -169.99 -5.03 15.79 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 C -0.12 -1.82 4.81 -26.73 -0.13 -1.95 16 23 C -0.12 -1.40 4.84 -26.74 -0.13 -1.53 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 26 H 0.07 0.75 7.42 -51.93 -0.39 0.37 16 27 H 0.06 0.42 6.95 -51.93 -0.36 0.06 16 28 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 29 H 0.08 0.58 6.01 -51.93 -0.31 0.27 16 30 H 0.10 1.11 7.40 -51.93 -0.38 0.73 16 31 H 0.07 0.99 8.10 -51.92 -0.42 0.57 16 32 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 33 H 0.07 1.23 8.10 -51.92 -0.42 0.81 16 34 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 35 H 0.08 1.36 7.41 -51.93 -0.38 0.97 16 36 H 0.06 1.37 6.49 -51.93 -0.34 1.04 16 37 H 0.06 1.50 7.13 -51.93 -0.37 1.13 16 38 H 0.03 0.52 5.75 -51.93 -0.30 0.22 16 39 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.09 1.41 4.59 -51.93 -0.24 1.17 16 42 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 43 H 0.07 0.73 4.53 -51.93 -0.24 0.50 16 LS Contribution 328.21 15.07 4.95 4.95 Total: -1.00 -33.06 328.21 -6.55 -39.62 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.62 Total: 1.47 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 0.38 Total: 4.92 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: -0.40 Total: -41.50 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: 0.17 Total: -25.23 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.06 -6.55 -39.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330790319.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.503 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds