Wall clock time and date at job start Tue Mar 31 2020 06:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47312 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47105 * 120.00272 * 9 7 5 12 12 H 1.48501 * 109.47040 * 239.99861 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.47074 * 179.97438 * 16 15 14 18 18 N 1.46507 * 109.47037 * 179.97438 * 17 16 15 19 19 C 1.35314 * 125.86518 * 124.71204 * 18 17 16 20 20 C 1.35352 * 106.17214 * 179.90720 * 19 18 17 21 21 C 1.50700 * 126.74954 * 180.12704 * 20 19 18 22 22 O 1.42899 * 109.47306 * 0.24923 * 21 20 19 23 23 N 1.33767 * 106.49714 * 0.35346 * 20 19 18 24 24 N 1.28635 * 108.88794 * 359.77911 * 23 20 19 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 30 30 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 32 32 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 33 33 H 1.00902 * 111.00150 * 56.04186 * 14 13 2 34 34 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 35 35 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 36 36 H 1.09001 * 109.46816 * 300.00451 * 16 15 14 37 37 H 1.09001 * 109.46992 * 59.99871 * 16 15 14 38 38 H 1.08991 * 109.47010 * 299.99707 * 17 16 15 39 39 H 1.09001 * 109.47270 * 60.00098 * 17 16 15 40 40 H 1.07995 * 126.91074 * 0.02562 * 19 18 17 41 41 H 1.08998 * 109.46855 * 120.24658 * 21 20 19 42 42 H 1.09004 * 109.47196 * 240.24990 * 21 20 19 43 43 H 0.96697 * 114.00146 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 0.7433 1.7749 -4.8434 11 1 2.7182 0.9681 -5.9958 12 1 0.6461 -0.2856 -6.1189 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 6 2.1967 -0.5003 6.1614 18 7 1.7928 0.2834 7.3315 19 6 1.0782 -0.1756 8.3849 20 6 0.9350 0.8728 9.2289 21 6 0.2149 0.8728 10.5527 22 8 -0.3105 -0.4311 10.8092 23 7 1.5540 1.9102 8.6544 24 7 2.0518 1.5283 7.5315 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 2.9246 -1.8413 -4.7316 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 0.6528 0.1793 2.4752 34 1 1.6920 -1.6245 3.7300 35 1 3.2126 -0.7037 3.6401 36 1 2.1373 1.1894 4.8260 37 1 0.6164 0.2691 4.9165 38 1 1.7623 -1.4979 6.2243 39 1 3.2836 -0.5783 6.1344 40 1 0.7000 -1.1775 8.5249 41 1 0.9115 1.1461 11.3452 42 1 -0.6018 1.5941 10.5221 43 1 -0.7883 -0.5049 11.6466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333370756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:00 Heat of formation + Delta-G solvation = 27.632102 kcal Electronic energy + Delta-G solvation = -20942.040326 eV Core-core repulsion = 17637.864085 eV Total energy + Delta-G solvation = -3304.176241 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.54063 -37.63437 -37.33330 -35.90250 -34.09024 -32.33067 -31.77211 -30.80290 -27.29699 -26.85265 -26.38666 -24.75436 -22.67569 -22.09777 -21.90474 -21.02085 -18.96765 -17.92338 -17.38832 -16.85609 -16.52414 -15.99685 -15.28051 -15.12019 -14.95158 -14.70951 -14.59585 -14.21684 -13.78926 -13.25484 -12.79466 -12.56062 -12.37102 -12.24459 -12.09854 -11.80633 -11.63049 -11.37525 -11.22647 -11.07614 -10.94586 -10.88946 -10.75035 -10.34671 -10.28500 -10.20225 -9.74801 -9.38407 -9.17977 -8.97177 -8.34507 -8.24937 -5.98931 -3.99997 1.33598 2.03304 2.19597 3.31613 3.39320 3.40216 3.43544 3.96524 4.18879 4.43361 4.47304 4.56938 4.66750 4.75115 4.79210 4.97851 4.99491 5.06885 5.16526 5.37051 5.40084 5.47032 5.65331 5.70900 5.74446 5.83711 5.94751 6.02159 6.20925 6.28997 6.42472 6.51970 6.89195 7.06567 7.08022 7.14134 7.28632 7.55051 7.68391 7.83628 8.01244 8.23028 8.45096 9.06565 9.63605 11.12605 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.050096 B = 0.001998 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.797174 B =14011.154094 C =14080.841117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.066 0.934 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.065 3.935 14 N -0.690 5.690 15 C 0.062 3.938 16 C -0.131 4.131 17 C 0.115 3.885 18 N -0.289 5.289 19 C -0.024 4.024 20 C -0.038 4.038 21 C 0.169 3.831 22 O -0.573 6.573 23 N -0.265 5.265 24 N -0.074 5.074 25 H 0.063 0.937 26 H 0.041 0.959 27 H 0.031 0.969 28 H 0.015 0.985 29 H 0.014 0.986 30 H 0.259 0.741 31 H 0.024 0.976 32 H 0.068 0.932 33 H 0.339 0.661 34 H 0.029 0.971 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.193 0.807 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.744 -0.906 28.488 28.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.104 4.104 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.322 5.322 15 C -0.068 4.068 16 C -0.170 4.170 17 C -0.006 4.006 18 N -0.082 5.082 19 C -0.174 4.174 20 C -0.176 4.176 21 C 0.089 3.911 22 O -0.378 6.378 23 N -0.134 5.134 24 N -0.054 5.054 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.034 0.966 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.158 0.842 34 H 0.048 0.952 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.210 0.790 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -3.154 0.518 27.156 27.344 hybrid contribution -1.542 -1.335 -0.075 2.040 sum -4.695 -0.817 27.081 27.497 Atomic orbital electron populations 1.21746 0.96682 1.00410 1.00338 1.21235 0.94884 1.00181 0.94112 0.91554 1.19116 0.96158 0.95356 0.90367 1.21279 1.34573 1.08272 0.90967 0.92478 1.25029 0.95330 0.95116 0.99149 1.69972 1.39108 1.21306 1.23284 0.86565 0.78264 0.80122 0.83231 1.19737 1.21073 1.21124 1.22153 1.00448 0.94379 0.89372 1.60518 1.19739 1.50611 1.01305 1.21806 1.01088 0.94655 0.89265 1.21871 1.02015 1.01609 0.91504 1.22204 1.02678 0.94020 0.81678 1.47496 1.35197 1.08937 1.16560 1.23367 1.02003 1.02779 0.89298 1.21642 1.05394 0.91023 0.99509 1.19863 0.95918 0.84669 0.90614 1.86354 1.75809 1.30689 1.44996 1.75025 1.11505 1.25064 1.01763 1.78337 1.20028 0.94315 1.12717 0.91781 0.94034 0.94997 0.96626 0.96754 0.93151 0.95743 0.91337 0.84228 0.95243 0.90569 0.88917 0.91231 0.87508 0.87825 0.79007 0.91492 0.91445 0.76203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.77 37.16 0.33 -2.15 16 2 C -0.09 -1.72 2.55 -90.62 -0.23 -1.95 16 3 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.33 8.41 -34.44 -0.29 -14.62 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.06 1.08 5.14 -3.83 -0.02 1.06 16 14 N -0.69 -9.55 6.50 -113.78 -0.74 -10.29 16 15 C 0.06 0.64 5.69 -3.82 -0.02 0.62 16 16 C -0.13 -1.19 5.60 -26.73 -0.15 -1.34 16 17 C 0.12 0.82 6.46 -4.04 -0.03 0.79 16 18 N -0.29 -2.89 3.44 -61.26 -0.21 -3.10 16 19 C -0.02 -0.22 10.91 -17.05 -0.19 -0.40 16 20 C -0.04 -0.39 7.22 -82.78 -0.60 -0.99 16 21 C 0.17 1.11 7.67 36.01 0.28 1.39 16 22 O -0.57 -3.17 13.04 -35.23 -0.46 -3.63 16 23 N -0.27 -3.49 12.41 33.29 0.41 -3.07 16 24 N -0.07 -0.97 12.91 60.35 0.78 -0.19 16 25 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 1.18 8.14 -51.92 -0.42 0.75 16 33 H 0.34 4.48 6.98 -39.29 -0.27 4.20 16 34 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 1.03 8.12 -51.93 -0.42 0.60 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.11 0.48 8.07 -51.93 -0.42 0.06 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.19 1.24 7.93 -52.49 -0.42 0.83 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.39 0.23 9.12 45.56 0.42 0.65 16 LS Contribution 357.68 15.07 5.39 5.39 Total: -1.00 -34.23 357.68 -6.65 -40.88 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.40 Total: -0.98 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -1.14 Total: -15.54 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.98 Total: -42.82 kcal Atomic # 8 Polarization: -3.17 SS G_CDS: -0.46 Total: -3.63 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.23 -6.65 -40.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333370756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.516 kcal (2) G-P(sol) polarization free energy of solvation -34.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds