Wall clock time and date at job start Tue Mar 31 2020 06:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47312 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47105 * 120.00272 * 9 7 5 12 12 H 1.48501 * 109.47040 * 239.99861 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.47074 * 179.97438 * 16 15 14 18 18 N 1.46507 * 109.47037 * 179.97438 * 17 16 15 19 19 C 1.35314 * 125.86518 * 124.71204 * 18 17 16 20 20 C 1.35352 * 106.17214 * 179.90720 * 19 18 17 21 21 C 1.50700 * 126.74954 * 180.12704 * 20 19 18 22 22 O 1.42899 * 109.47306 * 0.24923 * 21 20 19 23 23 N 1.33767 * 106.49714 * 0.35346 * 20 19 18 24 24 N 1.28635 * 108.88794 * 359.77911 * 23 20 19 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 30 30 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 32 32 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 33 33 H 1.00902 * 111.00150 * 56.04186 * 14 13 2 34 34 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 35 35 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 36 36 H 1.09001 * 109.46816 * 300.00451 * 16 15 14 37 37 H 1.09001 * 109.46992 * 59.99871 * 16 15 14 38 38 H 1.08991 * 109.47010 * 299.99707 * 17 16 15 39 39 H 1.09001 * 109.47270 * 60.00098 * 17 16 15 40 40 H 1.07995 * 126.91074 * 0.02562 * 19 18 17 41 41 H 1.08998 * 109.46855 * 120.24658 * 21 20 19 42 42 H 1.09004 * 109.47196 * 240.24990 * 21 20 19 43 43 H 0.96697 * 114.00146 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 0.7433 1.7749 -4.8434 11 1 2.7182 0.9681 -5.9958 12 1 0.6461 -0.2856 -6.1189 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 6 2.1967 -0.5003 6.1614 18 7 1.7928 0.2834 7.3315 19 6 1.0782 -0.1756 8.3849 20 6 0.9350 0.8728 9.2289 21 6 0.2149 0.8728 10.5527 22 8 -0.3105 -0.4311 10.8092 23 7 1.5540 1.9102 8.6544 24 7 2.0518 1.5283 7.5315 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 2.9246 -1.8413 -4.7316 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 0.6528 0.1793 2.4752 34 1 1.6920 -1.6245 3.7300 35 1 3.2126 -0.7037 3.6401 36 1 2.1373 1.1894 4.8260 37 1 0.6164 0.2691 4.9165 38 1 1.7623 -1.4979 6.2243 39 1 3.2836 -0.5783 6.1344 40 1 0.7000 -1.1775 8.5249 41 1 0.9115 1.1461 11.3452 42 1 -0.6018 1.5941 10.5221 43 1 -0.7883 -0.5049 11.6466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333370756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:59 Heat of formation + Delta-G solvation = 0.925407 kcal Electronic energy + Delta-G solvation = -20943.198415 eV Core-core repulsion = 17637.864085 eV Total energy + Delta-G solvation = -3305.334330 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.28913 -38.73112 -37.86526 -36.93490 -35.45708 -34.08447 -32.46587 -31.92381 -28.94358 -27.81037 -27.31433 -26.14573 -24.20540 -22.98821 -22.79770 -21.74187 -20.59720 -18.54099 -18.48981 -17.88813 -17.57750 -17.09664 -16.59965 -16.03117 -15.81150 -15.61489 -15.47924 -15.33526 -15.17642 -14.49329 -14.19007 -13.83343 -13.44431 -13.34052 -13.26384 -12.98267 -12.83518 -12.74440 -12.54914 -12.43777 -12.23568 -12.01027 -11.90000 -11.79847 -11.48161 -11.42946 -11.07898 -11.00679 -10.88392 -10.54280 -10.06205 -9.34729 -8.18246 -6.26950 0.60407 1.39153 1.39992 1.40411 1.42690 1.52855 2.41502 2.92657 3.13025 3.15265 3.56925 3.85446 3.88041 4.03302 4.04954 4.19462 4.24107 4.24809 4.35048 4.36479 4.47039 4.56758 4.58545 4.65320 4.77053 4.82436 4.87047 4.98261 5.04114 5.07982 5.19094 5.25280 5.38234 5.48380 5.55561 5.62241 5.80010 5.89430 6.08890 6.31514 6.48777 6.89260 6.92299 7.41263 7.44524 8.93845 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.050096 B = 0.001998 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.797174 B =14011.154094 C =14080.841117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.079 4.079 3 H 0.053 0.947 4 C 0.032 3.968 5 C -0.529 4.529 6 H 0.059 0.941 7 C -0.003 4.003 8 N -0.934 5.934 9 Si 0.961 3.039 10 H -0.263 1.263 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.079 3.921 14 N -0.698 5.698 15 C 0.064 3.936 16 C -0.118 4.118 17 C 0.113 3.887 18 N -0.285 5.285 19 C -0.018 4.018 20 C -0.054 4.054 21 C 0.173 3.827 22 O -0.582 6.582 23 N -0.300 5.300 24 N -0.115 5.115 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.065 0.935 28 H -0.013 1.013 29 H -0.008 1.008 30 H 0.262 0.738 31 H 0.029 0.971 32 H 0.059 0.941 33 H 0.344 0.656 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.143 0.857 39 H 0.114 0.886 40 H 0.222 0.778 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.977 -1.398 29.760 30.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.097 4.097 3 H 0.071 0.929 4 C -0.005 4.005 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.200 4.200 8 N -0.575 5.575 9 Si 0.786 3.214 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.204 1.204 13 C -0.050 4.050 14 N -0.330 5.330 15 C -0.065 4.065 16 C -0.157 4.157 17 C -0.007 4.007 18 N -0.078 5.078 19 C -0.169 4.169 20 C -0.193 4.193 21 C 0.094 3.906 22 O -0.392 6.392 23 N -0.167 5.167 24 N -0.094 5.094 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.006 0.994 29 H 0.011 0.989 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.163 0.837 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.161 0.839 39 H 0.132 0.868 40 H 0.238 0.762 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -4.395 0.042 28.454 28.791 hybrid contribution -1.165 -1.241 -0.407 1.750 sum -5.559 -1.198 28.047 28.618 Atomic orbital electron populations 1.21651 0.95010 1.00759 1.00999 1.21041 0.96233 0.98953 0.93518 0.92852 1.19009 0.94282 0.94640 0.92590 1.21683 1.34353 1.08510 0.92167 0.92243 1.25945 0.95314 0.96140 1.02631 1.70098 1.40273 1.22936 1.24207 0.85462 0.78053 0.78879 0.79042 1.18724 1.20620 1.20428 1.21820 0.99743 0.94296 0.89160 1.60416 1.20232 1.50835 1.01555 1.21847 1.01299 0.95455 0.87945 1.21668 1.01676 1.00346 0.92034 1.22432 1.03684 0.94763 0.79824 1.47710 1.34583 1.08322 1.17204 1.23868 1.00928 1.03630 0.88506 1.22331 1.05259 0.90693 1.01014 1.19857 0.96187 0.85392 0.89194 1.86289 1.76177 1.29956 1.46766 1.74954 1.12687 1.26692 1.02379 1.78275 1.21736 0.95971 1.13387 0.93798 0.93803 0.91612 0.99424 0.98940 0.92943 0.95280 0.92242 0.83655 0.93236 0.90376 0.91365 0.91388 0.83947 0.86755 0.76162 0.90465 0.90644 0.73746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 8.77 71.98 0.63 -3.90 16 2 C -0.08 -3.17 2.55 -10.79 -0.03 -3.20 16 3 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 4 C 0.03 1.69 4.45 29.85 0.13 1.82 16 5 C -0.53 -30.02 8.41 25.60 0.22 -29.80 16 6 H 0.06 3.27 7.06 -2.91 -0.02 3.25 16 7 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 8 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 9 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 10 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 C 0.08 2.57 5.14 86.30 0.44 3.01 16 14 N -0.70 -18.19 6.50 -513.89 -3.34 -21.53 16 15 C 0.06 1.18 5.69 86.30 0.49 1.67 16 16 C -0.12 -1.94 5.60 30.59 0.17 -1.77 16 17 C 0.11 1.32 6.46 86.38 0.56 1.88 16 18 N -0.28 -5.26 3.44 -347.74 -1.20 -6.46 16 19 C -0.02 -0.29 10.91 83.49 0.91 0.62 16 20 C -0.05 -1.06 7.22 41.60 0.30 -0.76 16 21 C 0.17 1.99 7.67 71.24 0.55 2.54 16 22 O -0.58 -4.99 13.04 -148.98 -1.94 -6.93 16 23 N -0.30 -7.88 12.41 -48.60 -0.60 -8.48 16 24 N -0.11 -2.99 12.91 37.02 0.48 -2.51 16 25 H 0.04 1.73 6.95 -2.39 -0.02 1.71 16 26 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 1.89 6.68 -2.39 -0.02 1.88 16 28 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 29 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 30 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.34 8.32 6.98 -89.69 -0.63 7.69 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 1.48 8.12 -2.39 -0.02 1.46 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.14 0.67 8.07 -2.39 -0.02 0.65 16 39 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.22 2.08 7.93 -2.91 -0.02 2.06 16 41 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.41 -0.57 9.12 -74.06 -0.68 -1.24 16 Total: -1.00 -75.80 357.68 0.24 -75.55 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -0.30 Total: 7.94 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 4.84 Total: -27.60 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -4.38 Total: -95.72 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -1.94 Total: -6.93 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -75.80 0.24 -75.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333370756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.480 kcal (2) G-P(sol) polarization free energy of solvation -75.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds