Wall clock time and date at job start Tue Mar 31 2020 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47388 * 2 1 4 4 H 1.08998 * 109.46794 * 305.42343 * 3 2 1 5 5 C 1.52995 * 109.47451 * 185.42089 * 3 2 1 6 6 O 1.42910 * 109.46906 * 65.30786 * 5 3 2 7 7 C 1.50700 * 109.47120 * 65.42031 * 3 2 1 8 8 N 1.30293 * 126.34650 * 59.96381 * 7 3 2 9 9 N 1.28530 * 110.05323 * 180.02562 * 8 7 3 10 10 C 1.31219 * 109.86309 * 359.97438 * 9 8 7 11 11 N 1.38576 * 126.47631 * 180.02562 * 10 9 8 12 12 C 1.46897 * 111.00275 * 302.52978 * 11 10 9 13 13 C 1.46897 * 110.99606 * 66.48504 * 11 10 9 14 14 H 1.09004 * 109.47329 * 299.99691 * 13 11 10 15 15 C 1.53002 * 109.47543 * 60.00137 * 13 11 10 16 16 C 1.50704 * 109.47007 * 180.02562 * 13 11 10 17 17 H 1.08000 * 119.99978 * 359.97438 * 16 13 11 18 18 C 1.37880 * 120.00176 * 180.02562 * 16 13 11 19 19 N 1.31518 * 120.00224 * 179.97438 * 18 16 13 20 20 Si 1.86804 * 119.99771 * 359.97438 * 18 16 13 21 21 H 1.48498 * 109.47121 * 90.00752 * 20 18 16 22 22 H 1.48500 * 109.47124 * 210.00327 * 20 18 16 23 23 H 1.48493 * 109.47109 * 330.00381 * 20 18 16 24 24 N 1.36459 * 107.04969 * 359.97438 * 10 9 8 25 25 C 1.46497 * 127.13446 * 179.73524 * 24 10 9 26 26 H 1.09001 * 109.47138 * 183.95335 * 1 2 3 27 27 H 1.09001 * 109.47034 * 303.95778 * 1 2 3 28 28 H 1.09002 * 109.46910 * 63.95428 * 1 2 3 29 29 H 1.08998 * 109.47095 * 239.99698 * 2 1 3 30 30 H 1.08999 * 109.47059 * 119.99735 * 2 1 3 31 31 H 1.08998 * 109.47648 * 185.30656 * 5 3 2 32 32 H 1.09003 * 109.47521 * 305.31213 * 5 3 2 33 33 H 0.96701 * 113.99720 * 180.02562 * 6 5 3 34 34 H 1.09003 * 109.46781 * 66.87569 * 12 11 10 35 35 H 1.08996 * 109.47358 * 186.87567 * 12 11 10 36 36 H 1.09001 * 109.46908 * 306.87950 * 12 11 10 37 37 H 1.09004 * 109.47132 * 180.02562 * 15 13 11 38 38 H 1.08998 * 109.46745 * 300.00170 * 15 13 11 39 39 H 1.08997 * 109.46950 * 59.99778 * 15 13 11 40 40 H 0.97001 * 119.99946 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.46859 * 85.89371 * 25 24 10 42 42 H 1.09000 * 109.47676 * 205.89114 * 25 24 10 43 43 H 1.08998 * 109.47638 * 325.89814 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5996 1.9835 -0.8374 5 6 3.5639 1.4446 -0.1363 6 8 3.9285 0.9213 -1.4151 7 6 1.6503 2.1131 1.2921 8 7 1.9958 1.7386 2.4913 9 7 1.4890 2.5340 3.3645 10 6 0.7877 3.4666 2.7642 11 7 0.0958 4.4995 3.3764 12 6 -0.8909 3.9786 4.3319 13 6 1.0189 5.4362 4.0308 14 1 1.5979 4.9067 4.7875 15 6 1.9666 6.0312 2.9874 16 6 0.2320 6.5428 4.6845 17 1 -0.8460 6.5498 4.6198 18 6 0.8884 7.5469 5.3643 19 7 0.2016 8.5129 5.9343 20 14 2.7530 7.5352 5.4755 21 1 3.3223 8.2819 4.3251 22 1 3.1773 8.1811 6.7436 23 1 3.2418 6.1333 5.4464 24 7 0.8694 3.2278 1.4231 25 6 0.2436 4.0008 0.3475 26 1 -0.3633 -1.0252 0.0709 27 1 -0.3633 0.5740 0.8524 28 1 -0.3633 0.4512 -0.9233 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9358 2.4648 -0.0418 32 1 3.9998 0.8250 0.6475 33 1 4.8825 0.8926 -1.5709 34 1 -0.3737 3.5010 5.1641 35 1 -1.5020 4.7995 4.7069 36 1 -1.5289 3.2487 3.8336 37 1 2.6519 6.7259 3.4732 38 1 2.5357 5.2306 2.5150 39 1 1.3876 6.5607 2.2308 40 1 0.6634 9.2191 6.4128 41 1 0.8910 4.8343 0.0750 42 1 0.0927 3.3592 -0.5207 43 1 -0.7183 4.3842 0.6876 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338358074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:37 Heat of formation + Delta-G solvation = 40.748247 kcal Electronic energy + Delta-G solvation = -23580.308245 eV Core-core repulsion = 20276.700763 eV Total energy + Delta-G solvation = -3303.607482 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.71347 -37.93975 -37.15350 -35.11532 -34.41490 -32.81505 -30.59295 -30.05740 -28.19629 -27.35602 -25.53783 -24.52616 -23.82030 -22.73570 -21.67400 -20.05370 -19.19069 -17.83004 -17.06833 -16.49045 -16.30127 -15.46275 -15.12633 -14.89033 -14.81287 -14.47552 -13.83113 -13.50452 -13.35903 -13.08497 -13.05387 -12.69479 -12.63448 -12.29519 -12.25370 -11.82284 -11.51058 -11.25428 -11.12774 -11.07341 -10.93035 -10.79888 -10.77183 -10.33212 -10.20833 -10.11759 -9.83364 -9.65608 -9.28709 -8.70485 -8.59125 -7.95476 -6.18309 -4.19096 2.00680 2.53254 3.14057 3.19724 3.33209 3.35719 3.91149 4.31044 4.33285 4.42008 4.63081 4.78182 4.87259 5.01069 5.13683 5.23247 5.25389 5.26714 5.41790 5.48995 5.57059 5.57370 5.71836 5.82101 5.89129 6.02202 6.08705 6.16438 6.21198 6.23868 6.26022 6.32559 6.45780 6.61298 6.73619 6.92351 7.06205 7.34605 7.38196 7.60971 7.92415 8.46819 8.84599 9.07817 9.41821 10.93571 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.025400 B = 0.004867 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.085906 B = 5752.232202 C = 6252.296841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C 0.010 3.990 4 H 0.090 0.910 5 C 0.087 3.913 6 O -0.573 6.573 7 C 0.164 3.836 8 N -0.284 5.284 9 N -0.320 5.320 10 C 0.376 3.624 11 N -0.462 5.462 12 C 0.052 3.948 13 C 0.195 3.805 14 H 0.019 0.981 15 C -0.145 4.145 16 C -0.513 4.513 17 H 0.087 0.913 18 C 0.078 3.922 19 N -0.893 5.893 20 Si 0.879 3.121 21 H -0.278 1.278 22 H -0.293 1.293 23 H -0.266 1.266 24 N -0.468 5.468 25 C 0.080 3.920 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.382 0.618 34 H 0.038 0.962 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.049 0.951 38 H 0.020 0.980 39 H 0.060 0.940 40 H 0.266 0.734 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.849 -12.875 -14.953 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.011 4.011 4 H 0.108 0.892 5 C 0.009 3.991 6 O -0.378 6.378 7 C -0.104 4.104 8 N -0.125 5.125 9 N -0.164 5.164 10 C 0.020 3.980 11 N -0.189 5.189 12 C -0.096 4.096 13 C 0.089 3.911 14 H 0.037 0.963 15 C -0.202 4.202 16 C -0.551 4.551 17 H 0.105 0.895 18 C -0.125 4.125 19 N -0.530 5.530 20 Si 0.709 3.291 21 H -0.205 1.205 22 H -0.220 1.220 23 H -0.191 1.191 24 N -0.161 5.161 25 C -0.063 4.063 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.230 0.770 34 H 0.057 0.943 35 H 0.113 0.887 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.039 0.961 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.563 -13.248 -14.140 19.546 hybrid contribution 1.398 0.833 -0.302 1.655 sum 3.960 -12.415 -14.442 19.452 Atomic orbital electron populations 1.21771 0.95774 1.01833 1.01455 1.21510 0.95881 0.93985 1.03365 1.19386 0.95172 0.96687 0.89858 0.89216 1.22057 0.93860 0.98025 0.85197 1.86389 1.28891 1.87068 1.35486 1.24176 0.98823 0.89645 0.97727 1.73901 1.20358 1.21973 0.96227 1.74695 1.12639 1.04543 1.24505 1.22820 0.97769 0.95659 0.81710 1.58999 1.15919 1.09810 1.34140 1.22229 0.93995 0.99948 0.93378 1.19840 0.89802 0.90492 0.90926 0.96341 1.22176 0.98807 0.99101 1.00143 1.20848 0.95395 1.06137 1.32697 0.89483 1.24823 0.97923 0.95021 0.94734 1.69852 1.35735 1.12414 1.35006 0.86972 0.86657 0.78797 0.76642 1.20495 1.22033 1.19073 1.46226 1.39095 1.22882 1.07855 1.21994 1.00107 0.95884 0.88296 0.92414 0.93058 0.92908 0.90237 0.90753 0.93510 0.92041 0.77043 0.94329 0.88666 0.93486 0.93244 0.96081 0.92135 0.92351 0.90269 0.89950 0.88367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.79 37.16 0.36 -1.19 16 2 C -0.11 -1.17 5.34 -26.73 -0.14 -1.31 16 3 C 0.01 0.12 2.46 -91.78 -0.23 -0.11 16 4 H 0.09 0.92 6.84 -51.93 -0.36 0.57 16 5 C 0.09 0.93 6.41 37.15 0.24 1.17 16 6 O -0.57 -5.20 13.12 -35.23 -0.46 -5.66 16 7 C 0.16 2.52 5.51 -154.02 -0.85 1.67 16 8 N -0.28 -5.34 12.18 32.99 0.40 -4.94 16 9 N -0.32 -6.82 12.15 30.31 0.37 -6.45 16 10 C 0.38 7.41 5.04 -318.87 -1.61 5.81 16 11 N -0.46 -9.65 4.66 -176.08 -0.82 -10.47 16 12 C 0.05 1.01 9.07 60.06 0.54 1.55 16 13 C 0.20 4.67 1.61 -68.86 -0.11 4.56 16 14 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 15 C -0.14 -3.23 8.55 37.16 0.32 -2.91 16 16 C -0.51 -13.78 8.54 -34.44 -0.29 -14.07 16 17 H 0.09 2.48 6.64 -52.49 -0.35 2.13 16 18 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 19 N -0.89 -26.30 13.96 55.43 0.77 -25.52 16 20 Si 0.88 21.75 24.37 -169.99 -4.14 17.61 16 21 H -0.28 -6.66 6.87 56.52 0.39 -6.27 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.27 -6.58 6.53 56.52 0.37 -6.21 16 24 N -0.47 -7.47 3.21 -121.46 -0.39 -7.86 16 25 C 0.08 0.95 10.99 59.85 0.66 1.61 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.64 7.27 -51.93 -0.38 0.26 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.77 7.69 -51.93 -0.40 0.37 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.38 1.81 9.12 45.56 0.42 2.23 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.91 6.34 -51.93 -0.33 1.58 16 36 H 0.05 0.80 8.09 -51.93 -0.42 0.38 16 37 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 38 H 0.02 0.44 7.22 -51.93 -0.38 0.06 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.08 0.71 7.04 -51.93 -0.37 0.34 16 43 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 341.25 15.07 5.14 5.14 Total: -1.00 -32.69 341.25 -6.42 -39.11 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.09 Total: 0.18 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -1.20 Total: -1.14 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.33 Total: -55.24 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.46 Total: -5.66 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.14 Total: 17.61 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.69 -6.42 -39.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338358074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.856 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds