Wall clock time and date at job start Tue Mar 31 2020 05:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 119.99410 * 2 1 4 4 O 1.21278 * 120.00196 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99667 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.46983 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.46922 * 180.02562 * 6 5 3 8 8 C 1.52995 * 109.46658 * 299.99871 * 7 6 5 9 9 N 1.46506 * 109.47011 * 179.97438 * 8 7 6 10 10 C 1.34773 * 119.99968 * 154.99680 * 9 8 7 11 11 O 1.21283 * 120.00360 * 359.73034 * 10 9 8 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 8 13 13 C 1.52998 * 109.47348 * 179.72561 * 12 10 9 14 14 C 1.50696 * 109.46969 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00408 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99883 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99834 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99926 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47155 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47086 * 120.00020 * 18 16 14 21 21 H 1.48500 * 109.46879 * 240.00077 * 18 16 14 22 22 C 1.53000 * 109.47680 * 60.00207 * 8 7 6 23 23 C 1.52996 * 109.46873 * 300.00042 * 22 8 7 24 24 H 1.08992 * 109.47470 * 60.00083 * 1 2 3 25 25 H 1.08998 * 109.46661 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47035 * 299.99579 * 1 2 3 27 27 H 0.96999 * 120.00265 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46684 * 59.99990 * 5 3 2 29 29 H 1.08995 * 109.47077 * 60.00522 * 6 5 3 30 30 H 1.09001 * 109.46907 * 300.00010 * 6 5 3 31 31 H 1.08998 * 109.46858 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.47087 * 59.99680 * 7 6 5 33 33 H 1.08995 * 109.47536 * 300.00054 * 8 7 6 34 34 H 0.96998 * 119.99507 * 335.00535 * 9 8 7 35 35 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 36 36 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 37 37 H 1.09000 * 109.46986 * 300.00089 * 13 12 10 38 38 H 1.09002 * 109.46857 * 60.00224 * 13 12 10 39 39 H 0.96999 * 119.99905 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.47185 * 59.99504 * 22 8 7 41 41 H 1.08996 * 109.47804 * 179.97438 * 22 8 7 42 42 H 1.08999 * 109.47373 * 299.99256 * 23 22 8 43 43 H 1.09001 * 109.47321 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6459 1.1673 0.0006 6 6 4.1558 2.6099 0.0011 7 6 5.6858 2.6099 0.0011 8 6 6.1958 1.8883 1.2500 9 7 7.6608 1.8877 1.2497 10 6 8.3349 1.7856 2.4123 11 8 7.7287 1.6990 3.4592 12 6 9.8419 1.7856 2.4121 13 6 10.3522 1.6663 3.8496 14 6 11.8592 1.6657 3.8492 15 1 12.3990 1.7431 2.9171 16 6 12.5488 1.5662 5.0390 17 7 11.8914 1.4714 6.1741 18 14 14.4168 1.5662 5.0387 19 1 14.9115 1.6834 3.6434 20 1 14.9120 2.7162 5.8372 21 1 14.9118 0.2996 5.6352 22 6 5.6859 0.4457 1.2496 23 6 4.1559 0.4457 1.2495 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.9501 -0.8400 0.0004 28 1 4.0095 0.6533 -0.8892 29 1 3.7922 3.1234 0.8911 30 1 3.7927 3.1238 -0.8889 31 1 6.0491 3.6376 0.0010 32 1 6.0492 2.0964 -0.8891 33 1 5.8325 2.4017 2.1402 34 1 8.1456 1.9610 0.4128 35 1 10.2051 0.9412 1.8262 36 1 10.2052 2.7150 1.9736 37 1 9.9889 2.5107 4.4353 38 1 9.9890 0.7368 4.2880 39 1 12.3766 1.4011 7.0111 40 1 6.0492 -0.0678 0.3594 41 1 6.0495 -0.0686 2.1391 42 1 3.7925 0.9591 2.1397 43 1 3.7926 -0.5820 1.2488 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347448356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:45 Heat of formation + Delta-G solvation = -110.094054 kcal Electronic energy + Delta-G solvation = -21921.174311 eV Core-core repulsion = 18578.733065 eV Total energy + Delta-G solvation = -3342.441246 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.54221 -39.34336 -37.55701 -34.95875 -33.96119 -33.42505 -31.15410 -31.00713 -29.82673 -27.08554 -25.61624 -23.31697 -22.91125 -21.51901 -20.64355 -20.19835 -19.37796 -17.67950 -16.89968 -16.37658 -16.03983 -15.71878 -15.50265 -14.93161 -14.52339 -14.41252 -14.26606 -14.18045 -13.42256 -13.19544 -12.87212 -12.84598 -12.61906 -12.45102 -12.21150 -12.07531 -11.71547 -11.43574 -11.35032 -11.13308 -10.94396 -10.70169 -10.57141 -10.43995 -10.00631 -9.94263 -9.64530 -9.48867 -9.14132 -8.96302 -8.73713 -8.31390 -5.95377 -3.99580 2.35028 2.88499 3.28662 3.32936 3.39749 3.42972 3.54730 4.33923 4.41497 4.45894 4.48574 4.81521 4.85929 4.97011 5.03854 5.12506 5.19147 5.21373 5.27887 5.39615 5.40677 5.44479 5.59156 5.65608 5.83080 5.85963 5.94487 5.96549 6.03750 6.17137 6.23197 6.26865 6.28661 6.81401 6.92067 7.10636 7.75910 7.88018 7.90698 7.94165 8.08522 8.40180 8.82764 9.09580 9.63914 11.15621 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.049350 B = 0.002538 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.238848 B =11031.693437 C =11274.875722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.738 5.738 3 C 0.517 3.483 4 O -0.538 6.538 5 C -0.107 4.107 6 C -0.095 4.095 7 C -0.125 4.125 8 C 0.142 3.858 9 N -0.741 5.741 10 C 0.510 3.490 11 O -0.534 6.534 12 C -0.131 4.131 13 C 0.037 3.963 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.128 4.128 23 C -0.106 4.106 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.402 0.598 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.396 0.604 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.260 0.740 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.413 -4.085 -17.218 26.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.390 5.390 3 C 0.303 3.697 4 O -0.415 6.415 5 C -0.129 4.129 6 C -0.133 4.133 7 C -0.163 4.163 8 C 0.037 3.963 9 N -0.394 5.394 10 C 0.298 3.702 11 O -0.410 6.410 12 C -0.171 4.171 13 C -0.001 4.001 14 C -0.564 4.564 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.167 4.167 23 C -0.145 4.145 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.236 0.764 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.230 0.770 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.280 -3.391 -16.234 26.198 hybrid contribution 1.399 -0.513 -0.362 1.534 sum -18.881 -3.903 -16.597 25.440 Atomic orbital electron populations 1.21531 0.79769 1.02168 1.02318 1.45863 1.07747 1.08959 1.76428 1.20813 0.90296 0.83434 0.75118 1.90704 1.70531 1.31347 1.48884 1.21424 0.90759 0.99693 1.00990 1.21285 0.94178 0.94056 1.03787 1.21824 0.95531 1.01343 0.97634 1.20885 0.80822 0.95530 0.99035 1.46276 1.06147 1.77291 1.09702 1.21556 0.91555 0.74302 0.82760 1.90665 1.70718 1.48090 1.31493 1.21866 0.88268 1.02427 1.04500 1.18896 0.94856 0.98509 0.87825 1.21270 0.91631 1.50767 0.92774 0.92567 1.25036 0.98402 0.95361 0.95674 1.70008 1.35242 1.49965 0.97624 0.86538 0.85847 0.77573 0.78007 1.19763 1.21029 1.21034 1.21923 0.94106 0.97579 1.03051 1.21492 0.96288 0.99969 0.96701 0.92309 0.90708 0.92220 0.76382 0.88366 0.90783 0.90854 0.90769 0.91381 0.89558 0.77046 0.90333 0.90312 0.95851 0.95862 0.93021 0.91642 0.90610 0.90978 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 10.70 59.85 0.64 1.15 16 2 N -0.74 -4.97 5.61 -67.08 -0.38 -5.35 16 3 C 0.52 5.03 7.16 -10.98 -0.08 4.95 16 4 O -0.54 -7.42 15.98 5.56 0.09 -7.33 16 5 C -0.11 -0.86 2.53 -91.77 -0.23 -1.09 16 6 C -0.09 -0.87 4.49 -26.73 -0.12 -0.99 16 7 C -0.13 -1.11 5.39 -26.73 -0.14 -1.26 16 8 C 0.14 1.69 2.46 -67.93 -0.17 1.52 16 9 N -0.74 -9.95 5.08 -53.80 -0.27 -10.23 16 10 C 0.51 9.63 7.79 -10.98 -0.09 9.54 16 11 O -0.53 -12.45 15.64 5.56 0.09 -12.36 16 12 C -0.13 -2.63 5.64 -27.88 -0.16 -2.79 16 13 C 0.04 0.99 4.26 -27.89 -0.12 0.87 16 14 C -0.53 -14.96 9.11 -34.44 -0.31 -15.27 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -27.53 13.29 55.43 0.74 -26.80 16 18 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 C -0.13 -1.34 5.49 -26.73 -0.15 -1.49 16 23 C -0.11 -0.90 5.10 -26.73 -0.14 -1.04 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.40 1.62 8.25 -40.82 -0.34 1.28 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 30 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.09 1.27 7.57 -51.93 -0.39 0.87 16 34 H 0.40 4.11 8.60 -40.82 -0.35 3.76 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.44 7.56 -51.93 -0.39 0.05 16 LS Contribution 352.03 15.07 5.31 5.31 Total: -1.00 -36.57 352.03 -7.96 -44.53 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -7.35 Total: -0.11 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -1.16 Total: -4.34 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.09 Total: -42.37 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: 0.18 Total: -19.69 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.57 -7.96 -44.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347448356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.568 kcal (2) G-P(sol) polarization free energy of solvation -36.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds