Wall clock time and date at job start Tue Mar 31 2020 05:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 119.99410 * 2 1 4 4 O 1.21278 * 120.00196 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99667 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.46983 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.46922 * 180.02562 * 6 5 3 8 8 C 1.52995 * 109.46658 * 299.99871 * 7 6 5 9 9 N 1.46506 * 109.47011 * 179.97438 * 8 7 6 10 10 C 1.34773 * 119.99968 * 154.99680 * 9 8 7 11 11 O 1.21283 * 120.00360 * 359.73034 * 10 9 8 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 8 13 13 C 1.52998 * 109.47348 * 179.72561 * 12 10 9 14 14 C 1.50696 * 109.46969 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00408 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99883 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99834 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99926 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47155 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47086 * 120.00020 * 18 16 14 21 21 H 1.48500 * 109.46879 * 240.00077 * 18 16 14 22 22 C 1.53000 * 109.47680 * 60.00207 * 8 7 6 23 23 C 1.52996 * 109.46873 * 300.00042 * 22 8 7 24 24 H 1.08992 * 109.47470 * 60.00083 * 1 2 3 25 25 H 1.08998 * 109.46661 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47035 * 299.99579 * 1 2 3 27 27 H 0.96999 * 120.00265 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46684 * 59.99990 * 5 3 2 29 29 H 1.08995 * 109.47077 * 60.00522 * 6 5 3 30 30 H 1.09001 * 109.46907 * 300.00010 * 6 5 3 31 31 H 1.08998 * 109.46858 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.47087 * 59.99680 * 7 6 5 33 33 H 1.08995 * 109.47536 * 300.00054 * 8 7 6 34 34 H 0.96998 * 119.99507 * 335.00535 * 9 8 7 35 35 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 36 36 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 37 37 H 1.09000 * 109.46986 * 300.00089 * 13 12 10 38 38 H 1.09002 * 109.46857 * 60.00224 * 13 12 10 39 39 H 0.96999 * 119.99905 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.47185 * 59.99504 * 22 8 7 41 41 H 1.08996 * 109.47804 * 179.97438 * 22 8 7 42 42 H 1.08999 * 109.47373 * 299.99256 * 23 22 8 43 43 H 1.09001 * 109.47321 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6459 1.1673 0.0006 6 6 4.1558 2.6099 0.0011 7 6 5.6858 2.6099 0.0011 8 6 6.1958 1.8883 1.2500 9 7 7.6608 1.8877 1.2497 10 6 8.3349 1.7856 2.4123 11 8 7.7287 1.6990 3.4592 12 6 9.8419 1.7856 2.4121 13 6 10.3522 1.6663 3.8496 14 6 11.8592 1.6657 3.8492 15 1 12.3990 1.7431 2.9171 16 6 12.5488 1.5662 5.0390 17 7 11.8914 1.4714 6.1741 18 14 14.4168 1.5662 5.0387 19 1 14.9115 1.6834 3.6434 20 1 14.9120 2.7162 5.8372 21 1 14.9118 0.2996 5.6352 22 6 5.6859 0.4457 1.2496 23 6 4.1559 0.4457 1.2495 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.9501 -0.8400 0.0004 28 1 4.0095 0.6533 -0.8892 29 1 3.7922 3.1234 0.8911 30 1 3.7927 3.1238 -0.8889 31 1 6.0491 3.6376 0.0010 32 1 6.0492 2.0964 -0.8891 33 1 5.8325 2.4017 2.1402 34 1 8.1456 1.9610 0.4128 35 1 10.2051 0.9412 1.8262 36 1 10.2052 2.7150 1.9736 37 1 9.9889 2.5107 4.4353 38 1 9.9890 0.7368 4.2880 39 1 12.3766 1.4011 7.0111 40 1 6.0492 -0.0678 0.3594 41 1 6.0495 -0.0686 2.1391 42 1 3.7925 0.9591 2.1397 43 1 3.7926 -0.5820 1.2488 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347448356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:44 Heat of formation + Delta-G solvation = -137.897944 kcal Electronic energy + Delta-G solvation = -21922.379978 eV Core-core repulsion = 18578.733065 eV Total energy + Delta-G solvation = -3343.646913 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.39519 -40.61018 -38.60976 -35.65223 -35.56843 -35.11614 -33.02771 -31.78895 -30.94279 -28.03243 -27.25280 -24.49706 -23.72375 -23.09783 -21.53924 -21.25562 -20.58815 -18.78406 -18.36676 -17.52637 -17.25629 -16.84820 -16.55100 -16.42511 -16.22482 -15.37530 -15.15341 -15.00323 -14.75052 -14.30975 -14.19648 -14.01201 -13.69286 -13.44174 -13.20746 -13.18686 -13.06075 -12.83712 -12.64103 -12.40729 -12.27104 -12.12024 -11.90361 -11.62344 -11.49459 -11.29335 -11.26920 -10.86570 -10.58617 -10.57321 -10.12324 -9.95941 -8.17506 -6.31454 1.42634 1.44147 1.57451 1.61188 1.77396 2.24472 2.34695 2.46475 3.15546 3.62541 3.66197 3.74206 4.05211 4.12761 4.18368 4.29040 4.37513 4.44053 4.50138 4.51854 4.55482 4.59501 4.61533 4.71978 4.86056 4.94782 5.01033 5.08106 5.12004 5.17575 5.19549 5.33839 5.38961 5.46781 5.50565 5.64544 5.65214 5.87043 6.18845 6.54859 6.70493 6.87886 7.26128 7.38599 7.43784 8.95427 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.049350 B = 0.002538 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.238848 B =11031.693437 C =11274.875722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.725 5.725 3 C 0.512 3.488 4 O -0.587 6.587 5 C -0.098 4.098 6 C -0.094 4.094 7 C -0.111 4.111 8 C 0.137 3.863 9 N -0.714 5.714 10 C 0.511 3.489 11 O -0.591 6.591 12 C -0.120 4.120 13 C 0.041 3.959 14 C -0.541 4.541 15 H 0.077 0.923 16 C -0.010 4.010 17 N -0.939 5.939 18 Si 0.975 3.025 19 H -0.252 1.252 20 H -0.282 1.282 21 H -0.280 1.280 22 C -0.122 4.122 23 C -0.099 4.099 24 H 0.051 0.949 25 H 0.109 0.891 26 H 0.043 0.957 27 H 0.419 0.581 28 H 0.133 0.867 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.049 0.951 34 H 0.417 0.583 35 H 0.106 0.894 36 H 0.103 0.897 37 H -0.021 1.021 38 H -0.018 1.018 39 H 0.262 0.738 40 H 0.095 0.905 41 H 0.041 0.959 42 H 0.046 0.954 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.391 -5.291 -20.665 28.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.377 5.377 3 C 0.299 3.701 4 O -0.467 6.467 5 C -0.119 4.119 6 C -0.132 4.132 7 C -0.149 4.149 8 C 0.033 3.967 9 N -0.366 5.366 10 C 0.299 3.701 11 O -0.471 6.471 12 C -0.159 4.159 13 C 0.004 3.996 14 C -0.579 4.579 15 H 0.095 0.905 16 C -0.207 4.207 17 N -0.579 5.579 18 Si 0.799 3.201 19 H -0.175 1.175 20 H -0.208 1.208 21 H -0.206 1.206 22 C -0.160 4.160 23 C -0.138 4.138 24 H 0.070 0.930 25 H 0.128 0.872 26 H 0.062 0.938 27 H 0.255 0.745 28 H 0.151 0.849 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.119 0.881 33 H 0.067 0.933 34 H 0.254 0.746 35 H 0.124 0.876 36 H 0.121 0.879 37 H -0.002 1.002 38 H 0.000 1.000 39 H 0.071 0.929 40 H 0.114 0.886 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.264 -4.633 -19.765 27.986 hybrid contribution 0.983 -0.151 0.717 1.226 sum -18.281 -4.785 -19.049 26.832 Atomic orbital electron populations 1.21651 0.79211 1.04115 1.01222 1.45816 1.08267 1.08892 1.74700 1.21122 0.90998 0.83465 0.74507 1.90688 1.71485 1.33179 1.51391 1.21387 0.89645 0.98986 1.01867 1.21242 0.94331 0.94939 1.02716 1.21738 0.95026 1.01302 0.96863 1.21048 0.79431 0.96913 0.99342 1.45961 1.06996 1.74838 1.08848 1.21321 0.91230 0.74142 0.83410 1.90656 1.71480 1.51058 1.33862 1.21636 0.89311 1.04797 1.00200 1.18690 0.94876 0.94544 0.91515 1.21764 0.92354 1.50093 0.93680 0.90498 1.26168 1.04601 0.94728 0.95176 1.70188 1.37851 1.51269 0.98584 0.85259 0.78332 0.77520 0.79034 1.17491 1.20763 1.20605 1.21849 0.95349 0.96061 1.02790 1.21429 0.94828 1.01407 0.96096 0.93031 0.87226 0.93770 0.74471 0.84882 0.93540 0.90363 0.90784 0.88058 0.93311 0.74557 0.87607 0.87896 1.00237 0.99978 0.92900 0.88644 0.93969 0.93512 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.70 127.77 1.37 2.22 16 2 N -0.72 -8.25 5.61 -484.52 -2.72 -10.97 16 3 C 0.51 9.32 7.16 87.66 0.63 9.95 16 4 O -0.59 -16.31 15.98 -3.02 -0.05 -16.36 16 5 C -0.10 -1.35 2.53 -11.54 -0.03 -1.37 16 6 C -0.09 -1.62 4.49 30.60 0.14 -1.48 16 7 C -0.11 -1.71 5.39 30.59 0.16 -1.55 16 8 C 0.14 3.16 2.46 44.99 0.11 3.28 16 9 N -0.71 -18.10 5.08 -442.53 -2.25 -20.34 16 10 C 0.51 19.48 7.79 87.66 0.68 20.16 16 11 O -0.59 -29.15 15.64 -3.04 -0.05 -29.20 16 12 C -0.12 -4.75 5.64 29.85 0.17 -4.58 16 13 C 0.04 2.32 4.26 29.85 0.13 2.45 16 14 C -0.54 -30.87 9.11 25.60 0.23 -30.63 16 15 H 0.08 3.98 7.74 -2.91 -0.02 3.95 16 16 C -0.01 -0.56 5.46 84.66 0.46 -0.10 16 17 N -0.94 -60.04 13.29 21.45 0.28 -59.76 16 18 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 19 H -0.25 -10.50 7.11 99.48 0.71 -9.80 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 22 C -0.12 -2.39 5.49 30.59 0.17 -2.22 16 23 C -0.10 -1.55 5.10 30.59 0.16 -1.39 16 24 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.42 1.99 8.25 -92.71 -0.76 1.22 16 28 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.05 1.05 8.10 -2.39 -0.02 1.04 16 30 H 0.08 1.31 8.10 -2.39 -0.02 1.29 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 1.52 7.57 -2.39 -0.02 1.50 16 34 H 0.42 7.20 8.60 -92.71 -0.80 6.40 16 35 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 36 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 37 H -0.02 -1.33 8.10 -2.39 -0.02 -1.35 16 38 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 39 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.10 0.97 7.56 -2.39 -0.02 0.96 16 Total: -1.00 -86.19 352.03 1.07 -85.12 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -0.56 Total: 10.35 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 4.38 Total: -5.28 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -4.68 Total: -91.06 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -0.10 Total: -45.56 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -86.19 1.07 -85.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347448356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.774 kcal (2) G-P(sol) polarization free energy of solvation -86.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds