Wall clock time and date at job start Tue Mar 31 2020 05:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21287 * 119.99862 * 2 1 4 4 N 1.34773 * 120.00282 * 179.97438 * 2 1 3 5 5 C 1.46496 * 120.00380 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47399 * 154.99923 * 5 4 2 7 7 C 1.52996 * 109.47175 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47231 * 299.99937 * 7 6 5 9 9 C 1.50706 * 109.47274 * 180.02562 * 8 7 6 10 10 O 1.21281 * 119.99699 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00080 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99969 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47237 * 179.72043 * 12 11 9 14 14 C 1.50696 * 109.46969 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00408 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99883 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99834 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99926 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47112 * 89.99781 * 18 16 14 20 20 H 1.48498 * 109.47011 * 210.00049 * 18 16 14 21 21 H 1.48494 * 109.47201 * 330.00023 * 18 16 14 22 22 C 1.53004 * 109.47051 * 60.00474 * 8 7 6 23 23 C 1.53002 * 109.47047 * 275.00358 * 5 4 2 24 24 H 1.09001 * 109.46966 * 240.00392 * 1 2 3 25 25 H 1.09001 * 109.47451 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47586 * 119.99832 * 1 2 3 27 27 H 0.96998 * 119.99726 * 0.02562 * 4 2 1 28 28 H 1.09001 * 109.46807 * 34.99895 * 5 4 2 29 29 H 1.09010 * 109.46564 * 60.00068 * 6 5 4 30 30 H 1.09004 * 109.46974 * 300.00622 * 6 5 4 31 31 H 1.09004 * 109.46699 * 180.02562 * 7 6 5 32 32 H 1.08993 * 109.47124 * 60.00287 * 7 6 5 33 33 H 1.08998 * 109.47794 * 300.00366 * 8 7 6 34 34 H 0.97005 * 120.00161 * 359.72088 * 11 9 8 35 35 H 1.09001 * 109.46512 * 299.72412 * 12 11 9 36 36 H 1.08998 * 109.47174 * 59.71534 * 12 11 9 37 37 H 1.09000 * 109.46986 * 299.99958 * 13 12 11 38 38 H 1.09002 * 109.46857 * 60.00093 * 13 12 11 39 39 H 0.96999 * 119.99905 * 179.97438 * 17 16 14 40 40 H 1.08993 * 109.47257 * 59.99678 * 22 8 7 41 41 H 1.09001 * 109.47281 * 179.97438 * 22 8 7 42 42 H 1.09001 * 109.46939 * 299.99457 * 23 5 4 43 43 H 1.08991 * 109.47217 * 59.99932 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6458 -1.1672 0.0000 6 6 4.1561 -2.4741 0.6103 7 6 5.6861 -2.4738 0.6102 8 6 6.1960 -2.3487 -0.8268 9 6 7.7031 -2.3491 -0.8269 10 8 8.3095 -2.4408 0.2194 11 7 8.3769 -2.2474 -1.9896 12 6 9.8420 -2.2483 -1.9897 13 6 10.3520 -2.1295 -3.4273 14 6 11.8589 -2.1298 -3.4273 15 1 12.3989 -2.2074 -2.4953 16 6 12.5483 -2.0310 -4.6174 17 7 11.8908 -1.9360 -5.7523 18 14 14.4163 -2.0321 -4.6174 19 1 14.9105 -3.4276 -4.7337 20 1 14.9117 -1.2340 -5.7676 21 1 14.9117 -1.4355 -3.3510 22 6 5.6859 -1.0417 -1.4371 23 6 4.1553 -1.0423 -1.4374 24 1 -0.3633 -0.5138 0.8900 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 1.6959 -2.0072 0.0005 28 1 4.0094 -0.3249 0.5887 29 1 3.7925 -3.3163 0.0214 30 1 3.7931 -2.5630 1.6342 31 1 6.0495 -3.4051 1.0446 32 1 6.0492 -1.6316 1.1992 33 1 5.8329 -3.1908 -1.4159 34 1 7.8919 -2.1781 -2.8269 35 1 10.2058 -1.4040 -1.4041 36 1 10.2048 -3.1779 -1.5511 37 1 9.9881 -2.9738 -4.0128 38 1 9.9891 -1.1999 -3.8659 39 1 12.3757 -1.8661 -6.5894 40 1 6.0490 -0.1996 -0.8481 41 1 6.0495 -0.9524 -2.4607 42 1 3.7917 -1.8846 -2.0261 43 1 3.7918 -0.1113 -1.8721 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354874509.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:26 Heat of formation + Delta-G solvation = -114.681941 kcal Electronic energy + Delta-G solvation = -21877.472774 eV Core-core repulsion = 18534.832582 eV Total energy + Delta-G solvation = -3342.640192 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.43256 -39.50511 -37.59520 -34.88439 -34.36165 -32.85292 -31.20324 -30.95708 -29.69653 -28.57327 -24.97305 -23.22438 -22.92373 -21.04508 -20.78318 -20.49949 -19.55850 -17.18552 -16.97038 -16.63265 -16.30060 -15.64666 -15.25434 -15.05648 -14.52140 -14.31024 -14.19282 -13.99650 -13.72842 -13.20616 -12.93169 -12.86343 -12.70938 -12.47048 -12.35136 -12.23266 -11.62844 -11.44263 -11.34166 -11.20114 -11.02972 -10.72109 -10.62952 -10.48059 -10.32123 -10.13196 -9.75331 -9.42387 -9.31889 -9.12000 -8.53223 -8.34242 -6.09542 -4.12278 2.35642 2.89013 3.02335 3.29389 3.35467 3.39620 3.70179 4.37744 4.41772 4.46375 4.53581 4.76350 4.87959 4.91821 4.94811 5.00365 5.15250 5.19637 5.25887 5.27521 5.31129 5.43115 5.53157 5.64781 5.79808 5.84929 5.96860 5.98657 6.13028 6.19162 6.27576 6.35658 6.36694 6.74622 6.94318 7.19966 7.51767 7.61760 7.88781 7.94135 8.03910 8.28066 8.67990 8.93816 9.52535 11.02075 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035933 B = 0.002619 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.031911 B =10688.423956 C =11164.384853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.508 3.492 3 O -0.544 6.544 4 N -0.729 5.729 5 C 0.140 3.860 6 C -0.124 4.124 7 C -0.094 4.094 8 C -0.109 4.109 9 C 0.508 3.492 10 O -0.552 6.552 11 N -0.722 5.722 12 C 0.121 3.879 13 C 0.013 3.987 14 C -0.521 4.521 15 H 0.059 0.941 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.109 4.109 23 C -0.125 4.125 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.399 0.601 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.397 0.603 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.262 0.738 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.490 -1.583 9.516 26.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.295 3.705 3 O -0.421 6.421 4 N -0.380 5.380 5 C 0.036 3.964 6 C -0.162 4.162 7 C -0.133 4.133 8 C -0.130 4.130 9 C 0.294 3.706 10 O -0.430 6.430 11 N -0.371 5.371 12 C -0.001 4.001 13 C -0.025 4.025 14 C -0.560 4.560 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.147 4.147 23 C -0.164 4.164 24 H 0.105 0.895 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.233 0.767 28 H 0.107 0.893 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.230 0.770 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.041 0.959 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.564 -0.852 10.076 25.642 hybrid contribution 0.562 -0.454 -0.671 0.986 sum -23.002 -1.306 9.405 24.885 Atomic orbital electron populations 1.21927 0.91828 1.05542 1.04155 1.20835 0.90587 0.83630 0.75474 1.90751 1.70844 1.31400 1.49129 1.46165 1.07430 1.08650 1.75759 1.21079 0.78897 0.99339 0.97059 1.21826 0.96642 0.96506 1.01232 1.21259 0.92993 1.03924 0.95096 1.21389 0.92616 1.00023 0.98983 1.20529 0.89508 0.76500 0.84093 1.90665 1.70466 1.50267 1.31610 1.46357 1.09178 1.73188 1.08408 1.21713 0.76330 1.00713 1.01388 1.19319 0.96504 0.97742 0.88920 1.21057 0.90978 1.50895 0.93079 0.92267 1.25002 0.98813 0.95003 0.95514 1.69952 1.35640 1.50040 0.97686 0.86508 0.85233 0.78082 0.77719 1.20565 1.21159 1.19729 1.21502 0.94902 0.96593 1.01718 1.21901 0.95423 1.02683 0.96360 0.89486 0.89027 0.89432 0.76669 0.89255 0.91287 0.91078 0.90580 0.90816 0.88676 0.76952 0.92621 0.92652 0.96002 0.95944 0.92848 0.90987 0.90695 0.91520 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.32 36.00 0.37 -0.44 16 2 C 0.51 4.52 7.90 -10.99 -0.09 4.43 16 3 O -0.54 -7.61 16.75 5.55 0.09 -7.52 16 4 N -0.73 -5.02 5.08 -53.81 -0.27 -5.29 16 5 C 0.14 1.23 2.45 -67.93 -0.17 1.06 16 6 C -0.12 -0.93 5.39 -26.73 -0.14 -1.08 16 7 C -0.09 -1.00 4.49 -26.74 -0.12 -1.12 16 8 C -0.11 -1.25 2.52 -91.77 -0.23 -1.48 16 9 C 0.51 8.39 7.16 -10.98 -0.08 8.31 16 10 O -0.55 -11.22 15.98 5.56 0.09 -11.14 16 11 N -0.72 -12.47 5.45 -60.29 -0.33 -12.80 16 12 C 0.12 2.59 5.61 -4.04 -0.02 2.57 16 13 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 14 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 18 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.11 -1.16 5.10 -26.70 -0.14 -1.30 16 23 C -0.13 -1.15 5.50 -26.70 -0.15 -1.30 16 24 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 25 H 0.09 0.48 8.12 -51.93 -0.42 0.06 16 26 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.40 1.50 8.60 -40.82 -0.35 1.15 16 28 H 0.09 1.01 7.58 -51.93 -0.39 0.61 16 29 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 32 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.40 5.94 7.90 -40.82 -0.32 5.62 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.78 7.57 -51.93 -0.39 0.39 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 353.23 15.07 5.32 5.32 Total: -1.00 -34.62 353.23 -8.03 -42.65 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.34 Total: 1.26 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -1.32 Total: -3.48 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.13 Total: -43.57 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: 0.18 Total: -18.66 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.62 -8.03 -42.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354874509.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.029 kcal (2) G-P(sol) polarization free energy of solvation -34.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds