Wall clock time and date at job start Tue Mar 31 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42907 * 113.99783 * 2 1 4 4 H 1.08994 * 110.29079 * 330.70120 * 3 2 1 5 5 C 1.54382 * 110.32311 * 92.83155 * 3 2 1 6 6 N 1.48555 * 104.59517 * 142.84846 * 5 3 2 7 7 C 1.48558 * 104.22343 * 320.51589 * 6 5 3 8 8 H 1.09007 * 110.40979 * 280.58657 * 7 6 5 9 9 C 1.50704 * 110.41386 * 158.26499 * 7 6 5 10 10 O 1.21291 * 119.99313 * 343.71182 * 9 7 6 11 11 N 1.34766 * 120.00190 * 163.71239 * 9 7 6 12 12 C 1.37104 * 120.00299 * 3.96440 * 11 9 7 13 13 H 1.07994 * 119.99975 * 122.75857 * 12 11 9 14 14 C 1.38953 * 119.99463 * 302.76284 * 12 11 9 15 15 N 1.31411 * 119.99690 * 159.07415 * 14 12 11 16 16 Si 1.86800 * 120.00388 * 339.07335 * 14 12 11 17 17 H 1.48499 * 109.46776 * 91.19562 * 16 14 12 18 18 H 1.48496 * 109.47024 * 211.19445 * 16 14 12 19 19 H 1.48496 * 109.46957 * 331.19500 * 16 14 12 20 20 C 1.46503 * 120.00192 * 183.96521 * 11 9 7 21 21 C 1.54273 * 110.02895 * 240.90359 * 20 11 9 22 22 C 1.54894 * 104.19191 * 217.09836 * 21 20 11 23 23 C 1.54892 * 102.74560 * 37.94698 * 22 21 20 24 24 C 1.53874 * 110.03450 * 123.73726 * 20 11 9 25 25 C 1.54261 * 110.31988 * 208.57107 * 3 2 1 26 26 H 1.09007 * 109.47389 * 59.99724 * 1 2 3 27 27 H 1.08995 * 109.47452 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47342 * 300.00089 * 1 2 3 29 29 H 1.08999 * 110.40693 * 261.62769 * 5 3 2 30 30 H 1.09003 * 110.41141 * 23.94853 * 5 3 2 31 31 H 1.00896 * 110.99934 * 80.07612 * 6 5 3 32 32 H 0.96994 * 120.00117 * 180.02562 * 15 14 12 33 33 H 1.09003 * 110.01262 * 2.34164 * 20 11 9 34 34 H 1.08995 * 110.48589 * 335.78037 * 21 20 11 35 35 H 1.09000 * 110.48175 * 98.42638 * 21 20 11 36 36 H 1.08998 * 110.75985 * 279.63166 * 22 21 20 37 37 H 1.08999 * 110.74837 * 156.25337 * 22 21 20 38 38 H 1.09003 * 110.48255 * 203.37234 * 23 22 21 39 39 H 1.09003 * 110.60007 * 80.78914 * 23 22 21 40 40 H 1.09002 * 110.02916 * 238.57144 * 24 20 11 41 41 H 1.08993 * 110.03290 * 359.94963 * 24 20 11 42 42 H 1.08998 * 110.32755 * 359.90256 * 25 3 2 43 43 H 1.09007 * 110.32191 * 122.11024 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3494 2.0134 -0.5003 5 6 2.2935 1.7663 1.4459 6 7 3.5735 2.5150 1.3562 7 6 4.3902 1.7279 0.3967 8 1 4.8289 0.8617 0.8921 9 6 5.4696 2.5901 -0.2055 10 8 5.3985 3.7980 -0.1211 11 7 6.5138 2.0190 -0.8378 12 6 6.5537 0.6587 -1.0045 13 1 6.6377 0.2384 -1.9958 14 6 6.4859 -0.1790 0.1020 15 7 6.1144 -1.4311 -0.0437 16 14 6.9231 0.4744 1.7965 17 1 5.6991 0.9940 2.4575 18 1 7.5009 -0.6212 2.6155 19 1 7.9168 1.5698 1.6633 20 6 7.6063 2.8517 -1.3471 21 6 7.7220 2.6936 -2.8773 22 6 9.2463 2.7360 -3.1493 23 6 9.8301 1.9567 -1.9447 24 6 8.9467 2.3831 -0.7542 25 6 3.3886 1.2782 -0.6918 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.4955 2.4187 1.8002 30 1 2.4002 0.9050 2.1054 31 1 3.4208 3.4528 1.0168 32 1 6.0667 -2.0158 0.7287 33 1 7.4296 3.8964 -1.0912 34 1 7.3042 1.7383 -3.1948 35 1 7.2209 3.5179 -3.3849 36 1 9.6089 3.7639 -3.1569 37 1 9.4854 2.2338 -4.0867 38 1 10.8675 2.2432 -1.7718 39 1 9.7546 0.8820 -2.1102 40 1 9.4209 3.2007 -0.2112 41 1 8.7842 1.5368 -0.0869 42 1 3.6227 0.2688 -1.0299 43 1 3.4045 1.9728 -1.5318 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574000354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:17 Heat of formation + Delta-G solvation = -64.912299 kcal Electronic energy + Delta-G solvation = -24230.250835 eV Core-core repulsion = 20889.768817 eV Total energy + Delta-G solvation = -3340.482018 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.79067 -38.43030 -36.98071 -35.49052 -34.22089 -31.81680 -29.21984 -28.71313 -28.08591 -26.89850 -26.03294 -24.61088 -22.48291 -20.63529 -20.21607 -19.53930 -19.03407 -17.60340 -16.42460 -15.96583 -15.91502 -15.15540 -14.94764 -14.64286 -14.27610 -14.15099 -13.74062 -13.44004 -13.13879 -12.78977 -12.69503 -12.37413 -12.34602 -11.89556 -11.44699 -11.38860 -11.21933 -11.12022 -10.95376 -10.79507 -10.61391 -10.53785 -10.43043 -10.05330 -9.99966 -9.78028 -9.69672 -9.43315 -8.96393 -8.59132 -8.14324 -7.50355 -6.47620 -4.26354 3.20925 3.29333 3.37253 3.56822 4.03675 4.14745 4.28258 4.83929 4.84695 5.01325 5.22648 5.29731 5.31882 5.38213 5.43465 5.49129 5.54521 5.70689 5.73561 5.90971 6.02053 6.06144 6.14579 6.16555 6.21532 6.23187 6.25711 6.31341 6.42821 6.45770 6.61731 6.67542 6.72482 6.88089 6.95314 7.03535 7.10899 7.52139 7.70658 7.78946 7.89043 8.47094 8.96638 9.25107 9.69481 10.60234 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020342 B = 0.006530 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.150945 B = 4287.123502 C = 4598.418884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.373 6.373 3 C 0.054 3.946 4 H 0.061 0.939 5 C 0.021 3.979 6 N -0.652 5.652 7 C 0.058 3.942 8 H 0.124 0.876 9 C 0.497 3.503 10 O -0.592 6.592 11 N -0.458 5.458 12 C -0.349 4.349 13 H 0.099 0.901 14 C 0.081 3.919 15 N -0.850 5.850 16 Si 0.832 3.168 17 H -0.245 1.245 18 H -0.286 1.286 19 H -0.255 1.255 20 C 0.129 3.871 21 C -0.126 4.126 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.132 4.132 25 C -0.125 4.125 26 H 0.037 0.963 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.343 0.657 32 H 0.276 0.724 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.082 0.918 42 H 0.106 0.894 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.964 3.617 -1.596 5.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.290 6.290 3 C -0.006 4.006 4 H 0.079 0.921 5 C -0.109 4.109 6 N -0.282 5.282 7 C -0.054 4.054 8 H 0.141 0.859 9 C 0.286 3.714 10 O -0.476 6.476 11 N -0.179 5.179 12 C -0.476 4.476 13 H 0.116 0.884 14 C -0.128 4.128 15 N -0.483 5.483 16 Si 0.656 3.344 17 H -0.170 1.170 18 H -0.212 1.212 19 H -0.179 1.179 20 C 0.025 3.975 21 C -0.164 4.164 22 C -0.158 4.158 23 C -0.154 4.154 24 C -0.170 4.170 25 C -0.165 4.165 26 H 0.056 0.944 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.161 0.839 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.101 0.899 42 H 0.124 0.876 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.583 3.624 -0.843 5.166 hybrid contribution -0.335 0.388 0.087 0.520 sum -3.918 4.012 -0.757 5.659 Atomic orbital electron populations 1.22743 0.82077 1.02387 0.99444 1.88047 1.18718 1.27383 1.94894 1.23705 0.95439 0.84478 0.96967 0.92081 1.23522 0.91958 0.99097 0.96368 1.63323 1.11700 1.05576 1.47646 1.22796 0.93357 0.97219 0.92044 0.85863 1.20504 0.83092 0.87591 0.80186 1.90507 1.78712 1.15014 1.63378 1.43713 1.15551 1.07055 1.51611 1.18753 1.55620 0.78123 0.95083 0.88380 1.25587 0.94013 0.94916 0.98258 1.69725 1.40585 1.05975 1.32021 0.87799 0.81580 0.79753 0.85268 1.17011 1.21171 1.17916 1.21705 0.87349 0.95458 0.92955 1.22628 0.95477 1.02256 0.96080 1.22420 0.96018 0.99486 0.97917 1.22260 0.97633 1.00523 0.94971 1.22490 0.94917 1.01336 0.98224 1.22649 0.91211 1.04989 0.97648 0.94448 0.89893 0.94430 0.91130 0.89552 0.83868 0.91331 0.90139 0.90144 0.92731 0.92303 0.92191 0.92852 0.91230 0.93070 0.89915 0.87566 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.86 101.05 1.10 1.47 16 2 O -0.37 -6.44 10.31 -35.23 -0.36 -6.81 16 3 C 0.05 0.92 3.52 -25.35 -0.09 0.83 16 4 H 0.06 0.91 7.83 -51.93 -0.41 0.50 16 5 C 0.02 0.36 7.21 -2.18 -0.02 0.34 16 6 N -0.65 -13.24 7.34 -103.82 -0.76 -14.00 16 7 C 0.06 1.30 1.95 -67.10 -0.13 1.17 16 8 H 0.12 3.04 2.85 -51.93 -0.15 2.89 16 9 C 0.50 11.95 5.57 -10.99 -0.06 11.89 16 10 O -0.59 -14.93 15.22 5.55 0.08 -14.84 16 11 N -0.46 -10.73 1.78 -106.54 -0.19 -10.92 16 12 C -0.35 -8.63 7.35 -14.93 -0.11 -8.74 16 13 H 0.10 2.59 7.11 -52.49 -0.37 2.22 16 14 C 0.08 2.06 4.03 -17.47 -0.07 1.99 16 15 N -0.85 -22.57 13.96 55.50 0.77 -21.80 16 16 Si 0.83 20.09 23.84 -169.99 -4.05 16.04 16 17 H -0.25 -6.03 6.21 56.52 0.35 -5.68 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.25 -6.20 5.97 56.52 0.34 -5.86 16 20 C 0.13 2.70 3.29 -66.81 -0.22 2.48 16 21 C -0.13 -2.28 6.42 -25.07 -0.16 -2.44 16 22 C -0.12 -1.84 6.91 -24.73 -0.17 -2.01 16 23 C -0.12 -1.91 6.83 -25.07 -0.17 -2.08 16 24 C -0.13 -2.57 6.17 -25.62 -0.16 -2.73 16 25 C -0.13 -2.56 6.04 -25.23 -0.15 -2.71 16 26 H 0.04 0.41 8.10 -51.92 -0.42 -0.01 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 1.55 8.08 -51.93 -0.42 1.13 16 31 H 0.34 6.76 7.79 -39.29 -0.31 6.46 16 32 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.08 1.75 6.96 -51.93 -0.36 1.39 16 34 H 0.08 1.58 6.59 -51.93 -0.34 1.23 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.08 1.83 4.57 -51.93 -0.24 1.59 16 42 H 0.11 2.41 7.98 -51.93 -0.41 1.99 16 43 H 0.07 1.36 7.86 -51.93 -0.41 0.95 16 LS Contribution 325.19 15.07 4.90 4.90 Total: -1.00 -28.12 325.19 -6.91 -35.04 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -6.89 Total: 12.94 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -0.41 Total: -0.54 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: -0.18 Total: -46.72 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.28 Total: -21.65 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.05 Total: 16.04 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.12 -6.91 -35.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574000354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.877 kcal (2) G-P(sol) polarization free energy of solvation -28.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds