Wall clock time and date at job start Tue Mar 31 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42907 * 113.99783 * 2 1 4 4 H 1.08994 * 110.29079 * 330.70120 * 3 2 1 5 5 C 1.54382 * 110.32311 * 92.83155 * 3 2 1 6 6 N 1.48555 * 104.59517 * 142.84846 * 5 3 2 7 7 C 1.48558 * 104.22343 * 320.51589 * 6 5 3 8 8 H 1.09007 * 110.40979 * 280.58657 * 7 6 5 9 9 C 1.50704 * 110.41386 * 158.26499 * 7 6 5 10 10 O 1.21291 * 119.99313 * 343.71182 * 9 7 6 11 11 N 1.34766 * 120.00190 * 163.71239 * 9 7 6 12 12 C 1.37104 * 120.00299 * 3.96440 * 11 9 7 13 13 H 1.07994 * 119.99975 * 122.75857 * 12 11 9 14 14 C 1.38953 * 119.99463 * 302.76284 * 12 11 9 15 15 N 1.31411 * 119.99690 * 159.07415 * 14 12 11 16 16 Si 1.86800 * 120.00388 * 339.07335 * 14 12 11 17 17 H 1.48499 * 109.46776 * 91.19562 * 16 14 12 18 18 H 1.48496 * 109.47024 * 211.19445 * 16 14 12 19 19 H 1.48496 * 109.46957 * 331.19500 * 16 14 12 20 20 C 1.46503 * 120.00192 * 183.96521 * 11 9 7 21 21 C 1.54273 * 110.02895 * 240.90359 * 20 11 9 22 22 C 1.54894 * 104.19191 * 217.09836 * 21 20 11 23 23 C 1.54892 * 102.74560 * 37.94698 * 22 21 20 24 24 C 1.53874 * 110.03450 * 123.73726 * 20 11 9 25 25 C 1.54261 * 110.31988 * 208.57107 * 3 2 1 26 26 H 1.09007 * 109.47389 * 59.99724 * 1 2 3 27 27 H 1.08995 * 109.47452 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47342 * 300.00089 * 1 2 3 29 29 H 1.08999 * 110.40693 * 261.62769 * 5 3 2 30 30 H 1.09003 * 110.41141 * 23.94853 * 5 3 2 31 31 H 1.00896 * 110.99934 * 80.07612 * 6 5 3 32 32 H 0.96994 * 120.00117 * 180.02562 * 15 14 12 33 33 H 1.09003 * 110.01262 * 2.34164 * 20 11 9 34 34 H 1.08995 * 110.48589 * 335.78037 * 21 20 11 35 35 H 1.09000 * 110.48175 * 98.42638 * 21 20 11 36 36 H 1.08998 * 110.75985 * 279.63166 * 22 21 20 37 37 H 1.08999 * 110.74837 * 156.25337 * 22 21 20 38 38 H 1.09003 * 110.48255 * 203.37234 * 23 22 21 39 39 H 1.09003 * 110.60007 * 80.78914 * 23 22 21 40 40 H 1.09002 * 110.02916 * 238.57144 * 24 20 11 41 41 H 1.08993 * 110.03290 * 359.94963 * 24 20 11 42 42 H 1.08998 * 110.32755 * 359.90256 * 25 3 2 43 43 H 1.09007 * 110.32191 * 122.11024 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3494 2.0134 -0.5003 5 6 2.2935 1.7663 1.4459 6 7 3.5735 2.5150 1.3562 7 6 4.3902 1.7279 0.3967 8 1 4.8289 0.8617 0.8921 9 6 5.4696 2.5901 -0.2055 10 8 5.3985 3.7980 -0.1211 11 7 6.5138 2.0190 -0.8378 12 6 6.5537 0.6587 -1.0045 13 1 6.6377 0.2384 -1.9958 14 6 6.4859 -0.1790 0.1020 15 7 6.1144 -1.4311 -0.0437 16 14 6.9231 0.4744 1.7965 17 1 5.6991 0.9940 2.4575 18 1 7.5009 -0.6212 2.6155 19 1 7.9168 1.5698 1.6633 20 6 7.6063 2.8517 -1.3471 21 6 7.7220 2.6936 -2.8773 22 6 9.2463 2.7360 -3.1493 23 6 9.8301 1.9567 -1.9447 24 6 8.9467 2.3831 -0.7542 25 6 3.3886 1.2782 -0.6918 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.4955 2.4187 1.8002 30 1 2.4002 0.9050 2.1054 31 1 3.4208 3.4528 1.0168 32 1 6.0667 -2.0158 0.7287 33 1 7.4296 3.8964 -1.0912 34 1 7.3042 1.7383 -3.1948 35 1 7.2209 3.5179 -3.3849 36 1 9.6089 3.7639 -3.1569 37 1 9.4854 2.2338 -4.0867 38 1 10.8675 2.2432 -1.7718 39 1 9.7546 0.8820 -2.1102 40 1 9.4209 3.2007 -0.2112 41 1 8.7842 1.5368 -0.0869 42 1 3.6227 0.2688 -1.0299 43 1 3.4045 1.9728 -1.5318 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574000354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:17 Heat of formation + Delta-G solvation = -84.997503 kcal Electronic energy + Delta-G solvation = -24231.121795 eV Core-core repulsion = 20889.768817 eV Total energy + Delta-G solvation = -3341.352978 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.52721 -39.89798 -38.50989 -37.00615 -36.05452 -33.75849 -30.77743 -30.17705 -29.54162 -28.46107 -27.12266 -26.54149 -24.11833 -22.07164 -21.62956 -21.17594 -20.85132 -19.34878 -17.88474 -17.68433 -17.54451 -16.63917 -16.44007 -16.17774 -15.83750 -15.70154 -15.43205 -15.11180 -14.78043 -14.35557 -14.15446 -14.09701 -13.86693 -13.47928 -13.10016 -12.93128 -12.77683 -12.70412 -12.54375 -12.37342 -12.15503 -11.92581 -11.85158 -11.69494 -11.47587 -11.40328 -11.28959 -10.94320 -10.79738 -10.48006 -9.68818 -9.39379 -8.50951 -6.28801 1.23208 1.32114 1.37621 1.70800 2.16037 2.52660 2.78363 2.88146 3.31189 3.62092 3.76942 3.87010 3.89713 3.95294 4.14333 4.24270 4.34169 4.41407 4.47108 4.57375 4.59830 4.65230 4.69719 4.72890 4.73335 4.84826 4.86993 4.90433 4.97832 5.03805 5.06286 5.14016 5.22767 5.39130 5.43700 5.52442 5.57009 5.73731 5.93756 6.28251 6.34664 6.44584 6.97097 7.31735 7.76658 8.60042 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020342 B = 0.006530 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.150945 B = 4287.123502 C = 4598.418884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.403 6.403 3 C 0.064 3.936 4 H 0.091 0.909 5 C 0.024 3.976 6 N -0.662 5.662 7 C 0.056 3.944 8 H 0.100 0.900 9 C 0.489 3.511 10 O -0.607 6.607 11 N -0.463 5.463 12 C -0.332 4.332 13 H 0.078 0.922 14 C 0.063 3.937 15 N -0.878 5.878 16 Si 0.869 3.131 17 H -0.253 1.253 18 H -0.283 1.283 19 H -0.259 1.259 20 C 0.118 3.882 21 C -0.123 4.123 22 C -0.108 4.108 23 C -0.111 4.111 24 C -0.134 4.134 25 C -0.122 4.122 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.056 0.944 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.347 0.653 32 H 0.278 0.722 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.321 4.820 -1.882 6.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.322 6.322 3 C 0.004 3.996 4 H 0.109 0.891 5 C -0.106 4.106 6 N -0.293 5.293 7 C -0.057 4.057 8 H 0.118 0.882 9 C 0.278 3.722 10 O -0.493 6.493 11 N -0.183 5.183 12 C -0.460 4.460 13 H 0.096 0.904 14 C -0.143 4.143 15 N -0.513 5.513 16 Si 0.693 3.307 17 H -0.178 1.178 18 H -0.210 1.210 19 H -0.183 1.183 20 C 0.015 3.985 21 C -0.161 4.161 22 C -0.146 4.146 23 C -0.149 4.149 24 C -0.173 4.173 25 C -0.161 4.161 26 H 0.071 0.929 27 H 0.114 0.886 28 H 0.074 0.926 29 H 0.128 0.872 30 H 0.092 0.908 31 H 0.166 0.834 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.938 4.823 -1.134 6.329 hybrid contribution -0.278 0.029 0.150 0.317 sum -4.216 4.852 -0.985 6.503 Atomic orbital electron populations 1.23017 0.79384 1.03879 1.01069 1.88006 1.21707 1.27420 1.95060 1.23567 0.94029 0.85342 0.96636 0.89115 1.23597 0.91564 0.99170 0.96261 1.63259 1.13299 1.05844 1.46914 1.22648 0.93717 0.96460 0.92844 0.88217 1.20850 0.83481 0.87678 0.80155 1.90478 1.79117 1.15532 1.64140 1.43818 1.16248 1.06747 1.51502 1.18465 1.54703 0.78798 0.94044 0.90425 1.25806 0.93971 0.94868 0.99688 1.69769 1.42101 1.06820 1.32632 0.87236 0.80769 0.79186 0.83475 1.17785 1.20953 1.18294 1.21969 0.87180 0.94447 0.94944 1.22579 0.98132 1.01463 0.93923 1.22401 0.93136 1.00896 0.98162 1.22238 0.98703 0.99908 0.94031 1.22504 0.94983 1.00635 0.99134 1.22551 0.93263 1.02881 0.97443 0.92950 0.88647 0.92558 0.87151 0.90766 0.83439 0.91172 0.91046 0.92213 0.91749 0.90043 0.90162 0.89910 0.92596 0.91747 0.92816 0.90659 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.86 113.37 1.23 1.72 16 2 O -0.40 -13.46 10.31 -148.98 -1.54 -14.99 16 3 C 0.06 2.08 3.52 31.49 0.11 2.19 16 4 H 0.09 2.42 7.83 -2.39 -0.02 2.41 16 5 C 0.02 0.77 7.21 86.45 0.62 1.40 16 6 N -0.66 -26.36 7.34 -482.38 -3.54 -29.91 16 7 C 0.06 2.52 1.95 44.40 0.09 2.61 16 8 H 0.10 5.03 2.85 -2.38 -0.01 5.02 16 9 C 0.49 23.75 5.57 87.66 0.49 24.23 16 10 O -0.61 -30.66 15.22 -3.06 -0.05 -30.70 16 11 N -0.46 -22.01 1.78 -609.37 -1.08 -23.09 16 12 C -0.33 -16.93 7.35 84.04 0.62 -16.31 16 13 H 0.08 4.27 7.11 -2.91 -0.02 4.25 16 14 C 0.06 3.30 4.03 84.93 0.34 3.64 16 15 N -0.88 -47.92 13.96 21.66 0.30 -47.62 16 16 Si 0.87 42.28 23.84 68.60 1.64 43.92 16 17 H -0.25 -12.53 6.21 99.48 0.62 -11.91 16 18 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 19 H -0.26 -12.62 5.97 99.48 0.59 -12.03 16 20 C 0.12 4.90 3.29 45.72 0.15 5.05 16 21 C -0.12 -4.33 6.42 31.67 0.20 -4.12 16 22 C -0.11 -3.00 6.91 31.89 0.22 -2.78 16 23 C -0.11 -3.43 6.83 31.67 0.22 -3.22 16 24 C -0.13 -5.15 6.17 31.32 0.19 -4.96 16 25 C -0.12 -5.00 6.04 31.57 0.19 -4.81 16 26 H 0.05 1.00 8.10 -2.38 -0.02 0.98 16 27 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.07 2.58 8.08 -2.39 -0.02 2.56 16 31 H 0.35 13.28 7.79 -89.70 -0.70 12.58 16 32 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 33 H 0.07 3.09 6.96 -2.39 -0.02 3.07 16 34 H 0.06 2.35 6.59 -2.39 -0.02 2.34 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.05 2.37 4.57 -2.39 -0.01 2.36 16 42 H 0.07 3.54 7.98 -2.39 -0.02 3.52 16 43 H 0.07 2.75 7.86 -2.38 -0.02 2.73 16 Total: -1.00 -61.94 325.19 0.51 -61.43 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: 0.11 Total: 36.32 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 4.67 Total: 4.65 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -4.32 Total: -100.62 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -1.58 Total: -45.70 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.64 Total: 43.92 kcal Total: -61.94 0.51 -61.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574000354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.570 kcal (2) G-P(sol) polarization free energy of solvation -61.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds