Wall clock time and date at job start Tue Mar 31 2020 05:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00391 * 2 1 4 4 O 1.42895 * 109.47360 * 134.99702 * 3 2 1 5 5 C 1.42899 * 114.00207 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.47084 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99975 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99809 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99936 * 0.02562 * 8 6 5 10 10 C 1.46499 * 119.99953 * 180.02562 * 8 6 5 11 11 C 1.53035 * 109.46011 * 119.99885 * 10 8 6 12 12 C 1.53197 * 109.31441 * 181.38844 * 11 10 8 13 13 N 1.46936 * 108.88860 * 305.29327 * 12 11 10 14 14 C 1.36935 * 120.62903 * 233.67990 * 13 12 11 15 15 H 1.08004 * 119.99817 * 27.39183 * 14 13 12 16 16 C 1.38804 * 120.00238 * 207.39383 * 14 13 12 17 17 N 1.31624 * 120.00025 * 17.25587 * 16 14 13 18 18 Si 1.86801 * 120.00311 * 197.25673 * 16 14 13 19 19 H 1.48505 * 109.47002 * 90.00337 * 18 16 14 20 20 H 1.48506 * 109.47209 * 209.99842 * 18 16 14 21 21 H 1.48497 * 109.47373 * 330.00036 * 18 16 14 22 22 C 1.47199 * 118.55490 * 53.53522 * 13 12 11 23 23 C 1.53048 * 109.45920 * 240.06779 * 10 8 6 24 24 H 1.07995 * 120.00095 * 179.97438 * 1 2 3 25 25 H 1.07998 * 119.99474 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99663 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47176 * 14.99762 * 3 2 1 28 28 H 1.09001 * 109.47327 * 255.00193 * 3 2 1 29 29 H 1.09004 * 109.46543 * 60.00455 * 5 4 3 30 30 H 1.08999 * 109.47335 * 300.00346 * 5 4 3 31 31 H 1.09005 * 109.47000 * 269.99743 * 9 8 6 32 32 H 1.08994 * 109.47190 * 29.99851 * 9 8 6 33 33 H 1.09001 * 109.46833 * 150.00548 * 9 8 6 34 34 H 1.09002 * 109.44878 * 0.03212 * 10 8 6 35 35 H 1.08994 * 109.50151 * 61.43686 * 11 10 8 36 36 H 1.09002 * 109.52726 * 301.35132 * 11 10 8 37 37 H 1.08995 * 109.58688 * 65.14877 * 12 11 10 38 38 H 1.08992 * 109.59155 * 185.43629 * 12 11 10 39 39 H 0.96996 * 120.00327 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.53355 * 186.67382 * 22 13 12 41 41 H 1.09002 * 109.67913 * 66.37170 * 22 13 12 42 42 H 1.08997 * 109.49500 * 298.56089 * 23 10 8 43 43 H 1.08993 * 109.49476 * 58.62948 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9085 2.4348 1.0320 6 6 4.9948 2.2562 2.0613 7 8 5.0903 1.2097 2.6669 8 7 5.8600 3.2595 2.3088 9 6 5.7442 4.5237 1.5777 10 6 6.9163 3.0858 3.3089 11 6 8.2831 3.2535 2.6413 12 6 9.3857 3.0369 3.6826 13 7 9.1550 3.9441 4.8153 14 6 10.1443 4.7869 5.2468 15 1 10.9012 5.1292 4.5565 16 6 10.1744 5.2012 6.5712 17 7 9.4868 4.5451 7.4818 18 14 11.1908 6.6898 7.0614 19 1 10.3573 7.9145 6.9567 20 1 11.6609 6.5292 8.4609 21 1 12.3621 6.8093 6.1564 22 6 7.8379 3.9287 5.4722 23 6 6.7527 4.1352 4.4109 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5399 0.9353 -0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3857 2.1161 0.2659 28 1 2.4756 1.4867 -0.9926 29 1 3.2690 3.2695 1.3192 30 1 4.3589 2.6394 0.0608 31 1 6.3444 4.4743 0.6691 32 1 4.7007 4.6972 1.3148 33 1 6.1015 5.3403 2.2051 34 1 6.8443 2.0887 3.7434 35 1 8.3654 4.2587 2.2281 36 1 8.3899 2.5213 1.8409 37 1 9.3617 2.0043 4.0308 38 1 10.3569 3.2496 3.2361 39 1 9.5081 4.8343 8.4074 40 1 7.7877 4.7321 6.2071 41 1 7.6862 2.9699 5.9681 42 1 6.8493 5.1321 3.9810 43 1 5.7696 4.0305 4.8698 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690018795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:52 Heat of formation + Delta-G solvation = -31.616093 kcal Electronic energy + Delta-G solvation = -22508.284175 eV Core-core repulsion = 19169.245989 eV Total energy + Delta-G solvation = -3339.038186 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.03882 -38.22475 -37.14227 -35.09153 -34.11995 -32.53396 -30.41048 -29.74287 -28.29785 -26.88786 -25.89803 -24.71454 -22.19586 -22.00875 -20.40941 -19.36615 -18.83383 -17.47340 -16.91432 -16.64053 -16.24281 -15.92558 -15.25388 -14.97098 -14.62066 -14.02467 -13.68162 -13.58753 -13.36360 -13.01538 -12.98673 -12.66043 -12.51444 -12.36380 -12.25286 -12.12631 -11.47791 -11.27787 -11.11943 -10.80118 -10.74798 -10.34521 -10.24516 -10.20382 -10.08187 -9.75617 -9.68281 -9.63657 -9.41575 -8.54971 -8.31153 -6.70020 -5.79162 -3.21387 1.81103 2.70821 2.83053 3.37256 3.44107 3.45624 3.78816 4.47864 4.48925 4.72309 4.77934 4.84534 4.93184 5.04555 5.13196 5.17785 5.30683 5.37330 5.42318 5.49866 5.53466 5.64781 5.68136 5.87434 6.07658 6.21008 6.24230 6.29764 6.33663 6.48890 6.55796 6.62757 6.75767 6.77270 6.94835 6.97688 7.33558 7.52962 7.66152 7.78884 8.31604 8.43770 9.19892 9.83397 10.40754 11.29742 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.044707 B = 0.003016 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.149057 B = 9281.712189 C = 9350.399738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.148 4.148 3 C 0.086 3.914 4 O -0.359 6.359 5 C 0.046 3.954 6 C 0.510 3.490 7 O -0.522 6.522 8 N -0.608 5.608 9 C 0.074 3.926 10 C 0.146 3.854 11 C -0.137 4.137 12 C 0.147 3.853 13 N -0.593 5.593 14 C -0.252 4.252 15 H 0.067 0.933 16 C 0.001 3.999 17 N -0.902 5.902 18 Si 0.903 3.097 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.172 3.828 23 C -0.145 4.145 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.118 0.882 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.020 0.980 38 H 0.057 0.943 39 H 0.254 0.746 40 H 0.091 0.909 41 H 0.021 0.979 42 H 0.058 0.942 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.529 -1.352 -16.432 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.166 4.166 3 C 0.010 3.990 4 O -0.278 6.278 5 C -0.033 4.033 6 C 0.297 3.703 7 O -0.397 6.397 8 N -0.343 5.343 9 C -0.070 4.070 10 C 0.044 3.956 11 C -0.177 4.177 12 C 0.020 3.980 13 N -0.315 5.315 14 C -0.381 4.381 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.547 5.547 18 Si 0.733 3.267 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.204 1.204 22 C 0.046 3.954 23 C -0.185 4.185 24 H 0.123 0.877 25 H 0.116 0.884 26 H 0.136 0.864 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.038 0.962 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.109 0.891 41 H 0.039 0.961 42 H 0.076 0.924 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.425 -2.053 -15.803 21.495 hybrid contribution 0.372 1.149 0.034 1.208 sum -14.053 -0.904 -15.769 21.142 Atomic orbital electron populations 1.23830 0.95492 1.02286 1.00238 1.22732 0.95620 0.98251 1.00019 1.21608 0.88859 0.96178 0.92390 1.88059 1.44207 1.35179 1.60316 1.22284 0.93301 0.88919 0.98838 1.20162 0.82453 0.84033 0.83694 1.90724 1.72181 1.26808 1.49950 1.48106 1.31462 1.13970 1.40714 1.21795 1.01381 0.86804 0.96974 1.21217 0.85156 1.01489 0.87719 1.22358 0.95377 1.01052 0.98910 1.20869 0.95196 0.93398 0.88550 1.44155 1.09968 1.42638 1.34786 1.19186 1.06622 1.20036 0.92306 0.91576 1.25051 0.99484 0.99659 0.95535 1.70033 1.44990 1.38748 1.00893 0.86281 0.79835 0.83025 0.77568 1.21488 1.21769 1.20448 1.20812 0.81619 1.00986 0.91976 1.22560 1.00395 0.97889 0.97670 0.87717 0.88443 0.86374 0.92633 0.92164 0.90409 0.90419 0.92575 0.91744 0.90072 0.88624 0.92090 0.92951 0.96169 0.92456 0.93572 0.89061 0.96059 0.92369 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 14.31 29.01 0.42 -0.89 16 2 C -0.15 -1.32 9.89 -36.03 -0.36 -1.68 16 3 C 0.09 0.78 6.35 36.00 0.23 1.01 16 4 O -0.36 -4.77 9.86 -55.14 -0.54 -5.32 16 5 C 0.05 0.52 4.97 36.01 0.18 0.70 16 6 C 0.51 8.06 7.75 -10.98 -0.09 7.98 16 7 O -0.52 -10.75 15.83 -14.35 -0.23 -10.98 16 8 N -0.61 -8.96 2.76 -173.88 -0.48 -9.44 16 9 C 0.07 0.77 9.33 59.85 0.56 1.33 16 10 C 0.15 2.62 2.48 -67.89 -0.17 2.45 16 11 C -0.14 -2.40 5.34 -26.61 -0.14 -2.54 16 12 C 0.15 3.11 6.51 -3.70 -0.02 3.08 16 13 N -0.59 -14.79 3.01 -172.10 -0.52 -15.31 16 14 C -0.25 -6.85 9.59 -15.06 -0.14 -6.99 16 15 H 0.07 1.76 7.89 -52.48 -0.41 1.34 16 16 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 17 N -0.90 -26.23 11.18 55.49 0.62 -25.61 16 18 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 C 0.17 4.13 5.33 -3.56 -0.02 4.11 16 23 C -0.15 -2.78 5.31 -26.61 -0.14 -2.92 16 24 H 0.10 0.62 8.06 -52.49 -0.42 0.20 16 25 H 0.10 0.59 7.90 -52.49 -0.41 0.17 16 26 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 27 H 0.06 0.41 7.86 -51.93 -0.41 0.01 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.68 7.40 -51.93 -0.38 0.29 16 30 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.49 6.44 -51.93 -0.33 0.15 16 33 H 0.08 0.90 6.46 -51.93 -0.34 0.57 16 34 H 0.10 1.98 6.90 -51.93 -0.36 1.63 16 35 H 0.06 1.03 7.72 -51.93 -0.40 0.63 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 39 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.09 2.43 6.04 -51.93 -0.31 2.11 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 1.08 6.73 -51.93 -0.35 0.73 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 346.27 15.07 5.22 5.22 Total: -1.00 -33.20 346.27 -7.81 -41.01 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -7.06 Total: -1.65 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 0.21 Total: 5.59 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.38 Total: -50.36 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.77 Total: -16.30 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.20 -7.81 -41.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690018795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.391 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds