Wall clock time and date at job start Tue Mar 31 2020 05:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00391 * 2 1 4 4 O 1.42895 * 109.47360 * 134.99702 * 3 2 1 5 5 C 1.42899 * 114.00207 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.47084 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99975 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99809 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99936 * 0.02562 * 8 6 5 10 10 C 1.46499 * 119.99953 * 180.02562 * 8 6 5 11 11 C 1.53035 * 109.46011 * 119.99885 * 10 8 6 12 12 C 1.53197 * 109.31441 * 181.38844 * 11 10 8 13 13 N 1.46936 * 108.88860 * 305.29327 * 12 11 10 14 14 C 1.36935 * 120.62903 * 233.67990 * 13 12 11 15 15 H 1.08004 * 119.99817 * 27.39183 * 14 13 12 16 16 C 1.38804 * 120.00238 * 207.39383 * 14 13 12 17 17 N 1.31624 * 120.00025 * 17.25587 * 16 14 13 18 18 Si 1.86801 * 120.00311 * 197.25673 * 16 14 13 19 19 H 1.48505 * 109.47002 * 90.00337 * 18 16 14 20 20 H 1.48506 * 109.47209 * 209.99842 * 18 16 14 21 21 H 1.48497 * 109.47373 * 330.00036 * 18 16 14 22 22 C 1.47199 * 118.55490 * 53.53522 * 13 12 11 23 23 C 1.53048 * 109.45920 * 240.06779 * 10 8 6 24 24 H 1.07995 * 120.00095 * 179.97438 * 1 2 3 25 25 H 1.07998 * 119.99474 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99663 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47176 * 14.99762 * 3 2 1 28 28 H 1.09001 * 109.47327 * 255.00193 * 3 2 1 29 29 H 1.09004 * 109.46543 * 60.00455 * 5 4 3 30 30 H 1.08999 * 109.47335 * 300.00346 * 5 4 3 31 31 H 1.09005 * 109.47000 * 269.99743 * 9 8 6 32 32 H 1.08994 * 109.47190 * 29.99851 * 9 8 6 33 33 H 1.09001 * 109.46833 * 150.00548 * 9 8 6 34 34 H 1.09002 * 109.44878 * 0.03212 * 10 8 6 35 35 H 1.08994 * 109.50151 * 61.43686 * 11 10 8 36 36 H 1.09002 * 109.52726 * 301.35132 * 11 10 8 37 37 H 1.08995 * 109.58688 * 65.14877 * 12 11 10 38 38 H 1.08992 * 109.59155 * 185.43629 * 12 11 10 39 39 H 0.96996 * 120.00327 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.53355 * 186.67382 * 22 13 12 41 41 H 1.09002 * 109.67913 * 66.37170 * 22 13 12 42 42 H 1.08997 * 109.49500 * 298.56089 * 23 10 8 43 43 H 1.08993 * 109.49476 * 58.62948 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9085 2.4348 1.0320 6 6 4.9948 2.2562 2.0613 7 8 5.0903 1.2097 2.6669 8 7 5.8600 3.2595 2.3088 9 6 5.7442 4.5237 1.5777 10 6 6.9163 3.0858 3.3089 11 6 8.2831 3.2535 2.6413 12 6 9.3857 3.0369 3.6826 13 7 9.1550 3.9441 4.8153 14 6 10.1443 4.7869 5.2468 15 1 10.9012 5.1292 4.5565 16 6 10.1744 5.2012 6.5712 17 7 9.4868 4.5451 7.4818 18 14 11.1908 6.6898 7.0614 19 1 10.3573 7.9145 6.9567 20 1 11.6609 6.5292 8.4609 21 1 12.3621 6.8093 6.1564 22 6 7.8379 3.9287 5.4722 23 6 6.7527 4.1352 4.4109 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5399 0.9353 -0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3857 2.1161 0.2659 28 1 2.4756 1.4867 -0.9926 29 1 3.2690 3.2695 1.3192 30 1 4.3589 2.6394 0.0608 31 1 6.3444 4.4743 0.6691 32 1 4.7007 4.6972 1.3148 33 1 6.1015 5.3403 2.2051 34 1 6.8443 2.0887 3.7434 35 1 8.3654 4.2587 2.2281 36 1 8.3899 2.5213 1.8409 37 1 9.3617 2.0043 4.0308 38 1 10.3569 3.2496 3.2361 39 1 9.5081 4.8343 8.4074 40 1 7.7877 4.7321 6.2071 41 1 7.6862 2.9699 5.9681 42 1 6.8493 5.1321 3.9810 43 1 5.7696 4.0305 4.8698 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690018795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:51 Heat of formation + Delta-G solvation = -52.553605 kcal Electronic energy + Delta-G solvation = -22509.192094 eV Core-core repulsion = 19169.245989 eV Total energy + Delta-G solvation = -3339.946105 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25605 -39.35150 -38.47954 -36.56478 -34.78979 -34.29856 -32.11125 -31.47488 -29.33307 -27.92797 -26.94683 -26.19426 -23.90526 -23.65526 -21.21729 -20.74540 -20.12765 -18.76890 -18.42273 -17.48761 -17.42727 -17.05523 -16.72302 -16.19862 -15.80294 -15.47687 -15.39372 -14.86884 -14.73322 -14.36222 -14.15504 -13.99870 -13.85359 -13.33521 -13.19485 -13.09582 -13.02268 -12.98054 -12.60788 -12.52755 -12.09099 -11.97286 -11.90919 -11.87552 -11.48015 -11.34792 -10.98052 -10.74084 -10.57642 -10.24834 -9.61706 -8.73964 -7.88004 -5.34019 1.19609 1.48855 1.49448 1.55332 1.59107 1.80277 2.51662 2.97065 3.27732 3.53743 3.63739 3.89234 4.03868 4.06108 4.13282 4.18547 4.27198 4.29855 4.35759 4.45024 4.46688 4.61740 4.63758 4.68097 4.73952 4.83496 4.98089 4.98738 5.03212 5.04859 5.13034 5.28409 5.43769 5.55110 5.62877 5.66689 5.68150 5.71220 6.10466 6.37290 6.44418 7.12151 7.15672 7.82152 8.36217 9.19535 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.044707 B = 0.003016 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.149057 B = 9281.712189 C = 9350.399738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.179 4.179 3 C 0.084 3.916 4 O -0.400 6.400 5 C 0.054 3.946 6 C 0.501 3.499 7 O -0.584 6.584 8 N -0.604 5.604 9 C 0.065 3.935 10 C 0.153 3.847 11 C -0.119 4.119 12 C 0.142 3.858 13 N -0.609 5.609 14 C -0.260 4.260 15 H 0.073 0.927 16 C -0.054 4.054 17 N -0.939 5.939 18 Si 0.971 3.029 19 H -0.282 1.282 20 H -0.299 1.299 21 H -0.266 1.266 22 C 0.179 3.821 23 C -0.126 4.126 24 H 0.114 0.886 25 H 0.113 0.887 26 H 0.104 0.896 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.004 0.996 38 H 0.065 0.935 39 H 0.250 0.750 40 H 0.062 0.938 41 H -0.013 1.013 42 H 0.073 0.927 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.658 0.729 -19.351 24.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.197 4.197 3 C 0.008 3.992 4 O -0.320 6.320 5 C -0.025 4.025 6 C 0.290 3.710 7 O -0.464 6.464 8 N -0.337 5.337 9 C -0.076 4.076 10 C 0.050 3.950 11 C -0.158 4.158 12 C 0.015 3.985 13 N -0.332 5.332 14 C -0.390 4.390 15 H 0.091 0.909 16 C -0.249 4.249 17 N -0.586 5.586 18 Si 0.799 3.201 19 H -0.209 1.209 20 H -0.226 1.226 21 H -0.191 1.191 22 C 0.053 3.947 23 C -0.166 4.166 24 H 0.132 0.868 25 H 0.132 0.868 26 H 0.122 0.878 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.022 0.978 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.005 0.995 42 H 0.092 0.908 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.566 0.061 -18.790 24.400 hybrid contribution 0.688 0.425 0.919 1.224 sum -14.878 0.486 -17.871 23.259 Atomic orbital electron populations 1.24056 0.94953 1.03530 0.97786 1.22807 0.96399 0.98137 1.02367 1.21809 0.88266 0.96600 0.92495 1.88014 1.45567 1.36532 1.61877 1.22360 0.92282 0.89226 0.98626 1.21135 0.83014 0.83035 0.83842 1.90700 1.73837 1.29365 1.52462 1.48058 1.30144 1.15612 1.39901 1.22157 1.04416 0.84048 0.97015 1.20787 0.86863 0.98947 0.88420 1.22132 0.93399 1.02481 0.97832 1.21018 0.97245 0.91818 0.88374 1.44409 1.09971 1.43253 1.35581 1.19561 1.06905 1.19976 0.92528 0.90909 1.25872 1.01116 1.02369 0.95584 1.70210 1.46986 1.40440 1.00927 0.85204 0.78647 0.79499 0.76707 1.20899 1.22566 1.19085 1.20573 0.83263 0.97973 0.92898 1.22273 0.98502 0.99123 0.96726 0.86827 0.86836 0.87835 0.90693 0.90286 0.87105 0.86874 0.90364 0.88029 0.90600 0.92267 0.90428 0.91119 0.97812 0.91659 0.94112 0.91985 0.99519 0.90799 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 14.31 67.78 0.97 -1.09 16 2 C -0.18 -2.99 9.89 25.64 0.25 -2.73 16 3 C 0.08 1.30 6.35 71.24 0.45 1.75 16 4 O -0.40 -9.95 9.86 -129.94 -1.28 -11.23 16 5 C 0.05 1.03 4.97 71.24 0.35 1.38 16 6 C 0.50 15.11 7.75 87.66 0.68 15.79 16 7 O -0.58 -24.66 15.83 16.00 0.25 -24.41 16 8 N -0.60 -16.46 2.76 -822.42 -2.27 -18.73 16 9 C 0.06 1.06 9.33 127.77 1.19 2.26 16 10 C 0.15 5.45 2.48 45.02 0.11 5.56 16 11 C -0.12 -3.99 5.34 30.67 0.16 -3.83 16 12 C 0.14 6.01 6.51 86.36 0.56 6.57 16 13 N -0.61 -30.92 3.01 -698.39 -2.10 -33.02 16 14 C -0.26 -14.19 9.59 84.03 0.81 -13.38 16 15 H 0.07 3.81 7.89 -2.91 -0.02 3.79 16 16 C -0.05 -3.04 4.92 84.86 0.42 -2.62 16 17 N -0.94 -56.52 11.18 21.65 0.24 -56.28 16 18 Si 0.97 44.56 29.59 68.60 2.03 46.59 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 C 0.18 8.95 5.33 86.31 0.46 9.41 16 23 C -0.13 -4.84 5.31 30.67 0.16 -4.68 16 24 H 0.11 1.15 8.06 -2.91 -0.02 1.13 16 25 H 0.11 1.02 7.90 -2.91 -0.02 1.00 16 26 H 0.10 1.95 8.06 -2.91 -0.02 1.93 16 27 H 0.07 0.84 7.86 -2.39 -0.02 0.82 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 29 H 0.11 1.37 7.40 -2.39 -0.02 1.36 16 30 H 0.11 1.36 8.11 -2.39 -0.02 1.34 16 31 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.10 0.94 6.44 -2.39 -0.02 0.93 16 33 H 0.08 1.37 6.46 -2.39 -0.02 1.36 16 34 H 0.06 2.56 6.90 -2.39 -0.02 2.55 16 35 H 0.08 2.39 7.72 -2.39 -0.02 2.37 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.06 2.63 7.93 -2.39 -0.02 2.61 16 39 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 40 H 0.06 3.44 6.04 -2.39 -0.01 3.43 16 41 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 42 H 0.07 2.61 6.73 -2.39 -0.02 2.60 16 43 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -76.69 346.27 4.43 -72.26 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.97 Total: 10.43 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 6.59 Total: 14.39 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -4.13 Total: -108.03 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -1.03 Total: -35.63 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -76.69 4.43 -72.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690018795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.710 kcal (2) G-P(sol) polarization free energy of solvation -76.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds