Wall clock time and date at job start Tue Mar 31 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42898 * 113.99467 * 2 1 4 4 C 1.53787 * 113.61397 * 150.00178 * 3 2 1 5 5 C 1.53783 * 87.08019 * 89.19563 * 4 3 2 6 6 C 1.50694 * 113.61039 * 139.98266 * 5 4 3 7 7 O 1.21276 * 120.00631 * 1.53357 * 6 5 4 8 8 N 1.34780 * 120.00132 * 181.52846 * 6 5 4 9 9 C 1.46491 * 120.00508 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47485 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.47070 * 295.00165 * 10 9 8 12 12 N 1.46499 * 109.46799 * 55.00265 * 10 9 8 13 13 C 1.36940 * 119.99991 * 205.00357 * 12 10 9 14 14 H 1.07998 * 119.99825 * 359.97438 * 13 12 10 15 15 C 1.38811 * 120.00230 * 180.02562 * 13 12 10 16 16 N 1.31613 * 119.99954 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00007 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47017 * 59.99561 * 17 15 13 19 19 H 1.48501 * 109.46738 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47076 * 299.99387 * 17 15 13 21 21 C 1.53000 * 109.47233 * 174.99791 * 10 9 8 22 22 C 1.52995 * 117.50099 * 248.74746 * 21 10 9 23 23 C 1.53004 * 117.50029 * 180.08739 * 21 10 9 24 24 C 1.53780 * 87.17144 * 25.39071 * 5 4 3 25 25 H 1.08989 * 109.47044 * 60.00076 * 1 2 3 26 26 H 1.08995 * 109.46851 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47080 * 299.99726 * 1 2 3 28 28 H 1.08994 * 112.85666 * 18.80635 * 3 2 1 29 29 H 1.09006 * 113.61074 * 334.64807 * 4 3 2 30 30 H 1.08995 * 113.61284 * 203.74565 * 4 3 2 31 31 H 1.08998 * 113.61384 * 270.80356 * 5 4 3 32 32 H 0.97008 * 119.99717 * 0.02562 * 8 6 5 33 33 H 1.09002 * 109.47215 * 60.00091 * 9 8 6 34 34 H 1.09000 * 109.47131 * 300.00146 * 9 8 6 35 35 H 0.97002 * 120.00410 * 24.99527 * 12 10 9 36 36 H 0.97001 * 120.00026 * 180.02562 * 16 15 13 37 37 H 1.09003 * 115.54875 * 34.42521 * 21 10 9 38 38 H 1.08997 * 117.49775 * 0.02562 * 22 21 10 39 39 H 1.09000 * 117.49863 * 145.02467 * 22 21 10 40 40 H 1.08993 * 117.49963 * 214.98702 * 23 21 10 41 41 H 1.08999 * 117.49372 * 359.97438 * 23 21 10 42 42 H 1.09004 * 113.61204 * 89.16063 * 24 5 4 43 43 H 1.09004 * 113.61425 * 220.05379 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3756 1.3720 0.7045 5 6 4.0063 1.0353 -0.6570 6 6 5.2711 1.8031 -0.9427 7 8 5.7106 2.5763 -0.1182 8 7 5.9142 1.6304 -2.1145 9 6 7.1441 2.3762 -2.3920 10 6 7.6682 1.9979 -3.7788 11 1 7.9606 0.9479 -3.7827 12 7 6.6158 2.2155 -4.7745 13 6 6.6264 1.5090 -5.9475 14 1 7.4108 0.7917 -6.1388 15 6 5.6296 1.7155 -6.8912 16 7 4.6740 2.5901 -6.6584 17 14 5.6446 0.7523 -8.4917 18 1 5.5630 -0.7006 -8.1957 19 1 4.4808 1.1540 -9.3220 20 1 6.9014 1.0374 -9.2293 21 6 8.8807 2.8663 -4.1202 22 6 8.7172 3.9007 -5.2356 23 6 9.5521 2.6405 -5.4764 24 6 2.7535 1.6496 -1.3035 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.3138 2.0789 0.3238 29 1 3.5176 0.5950 1.4557 30 1 3.6304 2.3669 1.0697 31 1 4.1106 -0.0346 -0.8373 32 1 5.5626 1.0121 -2.7742 33 1 7.8951 2.1310 -1.6410 34 1 6.9353 3.4456 -2.3614 35 1 5.9115 2.8600 -4.6029 36 1 3.9773 2.7341 -7.3177 37 1 9.5218 3.1302 -3.2791 38 1 7.7458 3.9628 -5.7260 39 1 9.2511 4.8450 -5.1285 40 1 10.6347 2.7561 -5.5275 41 1 9.1302 1.8729 -6.1252 42 1 2.8380 2.7205 -1.4884 43 1 2.3941 1.0964 -2.1713 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690156804.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:48 Heat of formation + Delta-G solvation = -23.627508 kcal Electronic energy + Delta-G solvation = -22610.636973 eV Core-core repulsion = 19271.945198 eV Total energy + Delta-G solvation = -3338.691775 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.21747 -38.50535 -37.52586 -35.55394 -34.38858 -33.22691 -30.86033 -28.45081 -27.04680 -25.72788 -25.57786 -23.59723 -22.54227 -21.51210 -20.50241 -19.52569 -18.90877 -17.61007 -17.04662 -16.07466 -15.82301 -15.40244 -15.29654 -15.09258 -14.66789 -14.43217 -14.02110 -13.78492 -13.27824 -13.12878 -12.89422 -12.45658 -12.23292 -12.02677 -11.82304 -11.43357 -11.26636 -11.17037 -10.88082 -10.85103 -10.69455 -10.52654 -10.42324 -10.15454 -9.70478 -9.65079 -9.52293 -9.30796 -9.12517 -8.97800 -8.55687 -7.07506 -5.84605 -3.14468 2.99587 3.38538 3.44025 3.44835 3.53611 3.67358 4.49329 4.50787 4.62199 4.64239 4.80085 4.93727 5.17164 5.25678 5.34146 5.37974 5.41701 5.48955 5.50573 5.59694 5.75067 5.78201 5.83521 5.85781 5.99243 6.03875 6.06818 6.09266 6.11381 6.23487 6.38758 6.48734 6.66017 6.77346 6.94735 7.02767 7.10987 7.27753 7.64371 8.02320 8.32698 8.65431 9.45062 9.99024 10.35447 11.36840 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014564 B = 0.004727 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.143889 B = 5922.186520 C = 7498.117874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.060 3.940 4 C -0.115 4.115 5 C -0.128 4.128 6 C 0.519 3.481 7 O -0.558 6.558 8 N -0.710 5.710 9 C 0.118 3.882 10 C 0.192 3.808 11 H 0.056 0.944 12 N -0.717 5.717 13 C -0.240 4.240 14 H 0.071 0.929 15 C -0.007 4.007 16 N -0.929 5.929 17 Si 0.902 3.098 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.286 1.286 21 C -0.177 4.177 22 C -0.163 4.163 23 C -0.176 4.176 24 C -0.139 4.139 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.411 0.589 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.085 0.915 38 H 0.118 0.882 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.462 -2.716 11.511 12.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C 0.002 3.998 4 C -0.153 4.153 5 C -0.150 4.150 6 C 0.305 3.695 7 O -0.438 6.438 8 N -0.361 5.361 9 C -0.006 4.006 10 C 0.081 3.919 11 H 0.074 0.926 12 N -0.358 5.358 13 C -0.371 4.371 14 H 0.089 0.911 15 C -0.203 4.203 16 N -0.576 5.576 17 Si 0.733 3.267 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.213 1.213 21 C -0.199 4.199 22 C -0.200 4.200 23 C -0.213 4.213 24 C -0.177 4.177 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.247 0.753 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.221 0.779 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.136 0.864 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.120 0.880 42 H 0.113 0.887 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.023 -2.452 11.924 12.543 hybrid contribution -0.446 -0.321 -1.397 1.501 sum -3.469 -2.773 10.527 11.426 Atomic orbital electron populations 1.22807 0.81003 1.02707 1.00047 1.87879 1.19659 1.26654 1.94584 1.23145 0.94607 0.85056 0.96978 1.23083 0.92756 1.03682 0.95729 1.22652 0.92340 1.01074 0.98901 1.20441 0.84942 0.82478 0.81619 1.90633 1.67831 1.38217 1.47070 1.46010 1.26459 1.45323 1.18292 1.21562 0.85790 0.96343 0.96932 1.19992 0.88167 0.96611 0.87120 0.92566 1.42454 1.27787 1.48642 1.16946 1.19122 1.07726 1.16291 0.93954 0.91149 1.24691 0.97612 0.99451 0.98593 1.69643 1.15005 1.37179 1.35809 0.86351 0.76934 0.79512 0.83878 1.21324 1.21804 1.21267 1.23074 1.01035 1.04031 0.91776 1.22907 1.02986 0.91372 1.02736 1.22846 0.96548 1.01990 0.99872 1.23384 0.94206 1.01983 0.98106 0.93795 0.89660 0.94086 0.90542 0.90395 0.87705 0.86826 0.75312 0.92008 0.91843 0.77937 0.93436 0.89665 0.86356 0.91322 0.91046 0.87957 0.88713 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.85 101.05 1.10 1.37 16 2 O -0.37 -4.45 10.64 -35.23 -0.37 -4.82 16 3 C 0.06 0.69 4.38 -25.83 -0.11 0.58 16 4 C -0.11 -1.41 7.23 -25.91 -0.19 -1.60 16 5 C -0.13 -1.76 4.08 -90.96 -0.37 -2.13 16 6 C 0.52 8.64 7.35 -10.99 -0.08 8.56 16 7 O -0.56 -10.84 15.91 5.56 0.09 -10.75 16 8 N -0.71 -11.89 5.39 -60.30 -0.32 -12.21 16 9 C 0.12 2.03 5.21 -4.05 -0.02 2.01 16 10 C 0.19 3.54 2.86 -67.93 -0.19 3.35 16 11 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 12 N -0.72 -15.86 3.08 -53.42 -0.16 -16.02 16 13 C -0.24 -5.95 8.16 -15.06 -0.12 -6.08 16 14 H 0.07 1.73 6.91 -52.49 -0.36 1.37 16 15 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 16 N -0.93 -26.05 13.06 55.49 0.72 -25.33 16 17 Si 0.90 21.26 29.55 -169.99 -5.02 16.23 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 C -0.18 -3.11 5.70 -90.62 -0.52 -3.63 16 22 C -0.16 -3.06 9.74 -26.70 -0.26 -3.32 16 23 C -0.18 -3.15 9.87 -26.69 -0.26 -3.41 16 24 C -0.14 -1.81 7.47 -25.83 -0.19 -2.00 16 25 H 0.04 0.37 8.14 -51.94 -0.42 -0.06 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.75 7.87 -51.93 -0.41 0.34 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.35 7.45 -51.93 -0.39 0.96 16 31 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.41 6.98 8.14 -40.82 -0.33 6.65 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.39 9.40 7.80 -40.82 -0.32 9.08 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.09 1.34 8.11 -51.93 -0.42 0.92 16 38 H 0.12 2.66 6.68 -51.93 -0.35 2.31 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.10 2.05 6.22 -51.93 -0.32 1.73 16 42 H 0.09 1.28 8.09 -51.93 -0.42 0.86 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 352.43 15.07 5.31 5.31 Total: -1.00 -28.56 352.43 -8.19 -36.75 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -7.10 Total: 17.44 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -1.32 Total: -6.59 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.24 Total: -53.56 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.29 Total: -15.58 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.56 -8.19 -36.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690156804.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.124 kcal (2) G-P(sol) polarization free energy of solvation -28.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds