Wall clock time and date at job start Tue Mar 31 2020 05:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42898 * 113.99467 * 2 1 4 4 C 1.53787 * 113.61397 * 150.00178 * 3 2 1 5 5 C 1.53783 * 87.08019 * 89.19563 * 4 3 2 6 6 C 1.50694 * 113.61039 * 139.98266 * 5 4 3 7 7 O 1.21276 * 120.00631 * 1.53357 * 6 5 4 8 8 N 1.34780 * 120.00132 * 181.52846 * 6 5 4 9 9 C 1.46491 * 120.00508 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47485 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.47070 * 295.00165 * 10 9 8 12 12 N 1.46499 * 109.46799 * 55.00265 * 10 9 8 13 13 C 1.36940 * 119.99991 * 205.00357 * 12 10 9 14 14 H 1.07998 * 119.99825 * 359.97438 * 13 12 10 15 15 C 1.38811 * 120.00230 * 180.02562 * 13 12 10 16 16 N 1.31613 * 119.99954 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00007 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47017 * 59.99561 * 17 15 13 19 19 H 1.48501 * 109.46738 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47076 * 299.99387 * 17 15 13 21 21 C 1.53000 * 109.47233 * 174.99791 * 10 9 8 22 22 C 1.52995 * 117.50099 * 248.74746 * 21 10 9 23 23 C 1.53004 * 117.50029 * 180.08739 * 21 10 9 24 24 C 1.53780 * 87.17144 * 25.39071 * 5 4 3 25 25 H 1.08989 * 109.47044 * 60.00076 * 1 2 3 26 26 H 1.08995 * 109.46851 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47080 * 299.99726 * 1 2 3 28 28 H 1.08994 * 112.85666 * 18.80635 * 3 2 1 29 29 H 1.09006 * 113.61074 * 334.64807 * 4 3 2 30 30 H 1.08995 * 113.61284 * 203.74565 * 4 3 2 31 31 H 1.08998 * 113.61384 * 270.80356 * 5 4 3 32 32 H 0.97008 * 119.99717 * 0.02562 * 8 6 5 33 33 H 1.09002 * 109.47215 * 60.00091 * 9 8 6 34 34 H 1.09000 * 109.47131 * 300.00146 * 9 8 6 35 35 H 0.97002 * 120.00410 * 24.99527 * 12 10 9 36 36 H 0.97001 * 120.00026 * 180.02562 * 16 15 13 37 37 H 1.09003 * 115.54875 * 34.42521 * 21 10 9 38 38 H 1.08997 * 117.49775 * 0.02562 * 22 21 10 39 39 H 1.09000 * 117.49863 * 145.02467 * 22 21 10 40 40 H 1.08993 * 117.49963 * 214.98702 * 23 21 10 41 41 H 1.08999 * 117.49372 * 359.97438 * 23 21 10 42 42 H 1.09004 * 113.61204 * 89.16063 * 24 5 4 43 43 H 1.09004 * 113.61425 * 220.05379 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3756 1.3720 0.7045 5 6 4.0063 1.0353 -0.6570 6 6 5.2711 1.8031 -0.9427 7 8 5.7106 2.5763 -0.1182 8 7 5.9142 1.6304 -2.1145 9 6 7.1441 2.3762 -2.3920 10 6 7.6682 1.9979 -3.7788 11 1 7.9606 0.9479 -3.7827 12 7 6.6158 2.2155 -4.7745 13 6 6.6264 1.5090 -5.9475 14 1 7.4108 0.7917 -6.1388 15 6 5.6296 1.7155 -6.8912 16 7 4.6740 2.5901 -6.6584 17 14 5.6446 0.7523 -8.4917 18 1 5.5630 -0.7006 -8.1957 19 1 4.4808 1.1540 -9.3220 20 1 6.9014 1.0374 -9.2293 21 6 8.8807 2.8663 -4.1202 22 6 8.7172 3.9007 -5.2356 23 6 9.5521 2.6405 -5.4764 24 6 2.7535 1.6496 -1.3035 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.3138 2.0789 0.3238 29 1 3.5176 0.5950 1.4557 30 1 3.6304 2.3669 1.0697 31 1 4.1106 -0.0346 -0.8373 32 1 5.5626 1.0121 -2.7742 33 1 7.8951 2.1310 -1.6410 34 1 6.9353 3.4456 -2.3614 35 1 5.9115 2.8600 -4.6029 36 1 3.9773 2.7341 -7.3177 37 1 9.5218 3.1302 -3.2791 38 1 7.7458 3.9628 -5.7260 39 1 9.2511 4.8450 -5.1285 40 1 10.6347 2.7561 -5.5275 41 1 9.1302 1.8729 -6.1252 42 1 2.8380 2.7205 -1.4884 43 1 2.3941 1.0964 -2.1713 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690156804.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:47 Heat of formation + Delta-G solvation = -41.582689 kcal Electronic energy + Delta-G solvation = -22611.415568 eV Core-core repulsion = 19271.945198 eV Total energy + Delta-G solvation = -3339.470370 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.39326 -39.73708 -38.95983 -36.54347 -35.84399 -35.03454 -32.59214 -30.05199 -27.94540 -26.79590 -26.62315 -25.41801 -23.96830 -22.97764 -21.75918 -20.82372 -20.23181 -19.25777 -18.48550 -17.15167 -17.08156 -16.78605 -16.50366 -16.32291 -16.04926 -15.79423 -15.47783 -15.21818 -14.74623 -14.48123 -14.37704 -13.66345 -13.46176 -13.18547 -12.93778 -12.83765 -12.81163 -12.63285 -12.59269 -12.30771 -12.14833 -11.96301 -11.69444 -11.58045 -11.41307 -11.02806 -10.94945 -10.68761 -10.59970 -10.42442 -9.96985 -8.97965 -7.87257 -5.14553 1.50572 1.51517 1.56352 1.66542 2.33375 2.59436 2.72111 3.14052 3.47329 3.48536 3.61996 3.76298 3.88549 3.92002 4.01919 4.24291 4.31266 4.33864 4.35510 4.51160 4.56973 4.60082 4.60639 4.69034 4.75707 4.83179 4.88356 4.95180 4.96865 5.01701 5.08933 5.18343 5.20983 5.26765 5.43353 5.59417 5.67171 5.68842 6.28474 6.32697 6.64602 7.29314 7.41413 8.11972 8.37888 9.34909 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014564 B = 0.004727 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.143889 B = 5922.186520 C = 7498.117874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.388 6.388 3 C 0.073 3.927 4 C -0.110 4.110 5 C -0.129 4.129 6 C 0.519 3.481 7 O -0.586 6.586 8 N -0.710 5.710 9 C 0.127 3.873 10 C 0.193 3.807 11 H 0.059 0.941 12 N -0.719 5.719 13 C -0.220 4.220 14 H 0.075 0.925 15 C -0.064 4.064 16 N -0.963 5.963 17 Si 0.956 3.044 18 H -0.280 1.280 19 H -0.303 1.303 20 H -0.284 1.284 21 C -0.169 4.169 22 C -0.173 4.173 23 C -0.170 4.170 24 C -0.141 4.141 25 H 0.045 0.955 26 H 0.098 0.902 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.410 0.590 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.374 0.626 36 H 0.247 0.753 37 H 0.115 0.885 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.781 -3.494 12.543 13.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.307 6.307 3 C 0.014 3.986 4 C -0.148 4.148 5 C -0.150 4.150 6 C 0.306 3.694 7 O -0.468 6.468 8 N -0.360 5.360 9 C 0.002 3.998 10 C 0.084 3.916 11 H 0.077 0.923 12 N -0.359 5.359 13 C -0.352 4.352 14 H 0.093 0.907 15 C -0.256 4.256 16 N -0.614 5.614 17 Si 0.787 3.213 18 H -0.207 1.207 19 H -0.230 1.230 20 H -0.211 1.211 21 C -0.190 4.190 22 C -0.210 4.210 23 C -0.207 4.207 24 C -0.179 4.179 25 H 0.064 0.936 26 H 0.116 0.884 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.140 0.860 32 H 0.246 0.754 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.207 0.793 36 H 0.056 0.944 37 H 0.132 0.868 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.306 -3.261 12.969 13.570 hybrid contribution -0.605 -0.089 -1.672 1.781 sum -2.912 -3.350 11.297 12.137 Atomic orbital electron populations 1.23019 0.79340 1.03938 1.00939 1.87849 1.21544 1.26766 1.94567 1.23035 0.94668 0.85641 0.95220 1.23041 0.93074 1.03566 0.95106 1.22741 0.90931 1.01085 1.00239 1.20932 0.85402 0.82098 0.80947 1.90614 1.68748 1.39553 1.47849 1.46037 1.26441 1.45122 1.18408 1.21450 0.86351 0.95588 0.96387 1.20115 0.87689 0.96993 0.86831 0.92322 1.42494 1.28426 1.47952 1.17026 1.19372 1.06565 1.15003 0.94240 0.90736 1.25274 0.98107 1.00958 1.01308 1.69783 1.15913 1.39303 1.36399 0.85481 0.76254 0.78640 0.80974 1.20673 1.22978 1.21091 1.23061 1.00614 1.02809 0.92497 1.22769 1.01642 0.93002 1.03610 1.22837 0.98016 1.00426 0.99414 1.23374 0.94381 1.01313 0.98811 0.93599 0.88380 0.92477 0.88489 0.89561 0.88307 0.85980 0.75443 0.90435 0.93189 0.79341 0.94410 0.86756 0.90423 0.89126 0.88057 0.90353 0.89510 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.85 113.37 1.23 1.60 16 2 O -0.39 -8.68 10.64 -148.98 -1.58 -10.27 16 3 C 0.07 1.56 4.38 31.18 0.14 1.70 16 4 C -0.11 -2.58 7.23 31.12 0.22 -2.35 16 5 C -0.13 -3.45 4.08 -11.02 -0.04 -3.49 16 6 C 0.52 17.04 7.35 87.65 0.64 17.69 16 7 O -0.59 -22.51 15.91 -3.02 -0.05 -22.56 16 8 N -0.71 -23.49 5.39 -463.08 -2.49 -25.98 16 9 C 0.13 4.23 5.21 86.38 0.45 4.68 16 10 C 0.19 6.91 2.86 44.99 0.13 7.03 16 11 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 12 N -0.72 -31.93 3.08 -322.94 -0.99 -32.92 16 13 C -0.22 -10.92 8.16 84.03 0.69 -10.23 16 14 H 0.07 3.61 6.91 -2.91 -0.02 3.59 16 15 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 16 N -0.96 -55.35 13.06 21.65 0.28 -55.07 16 17 Si 0.96 44.12 29.55 68.60 2.03 46.14 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 21 C -0.17 -5.55 5.70 -10.79 -0.06 -5.62 16 22 C -0.17 -6.31 9.74 30.62 0.30 -6.01 16 23 C -0.17 -5.74 9.87 30.62 0.30 -5.44 16 24 C -0.14 -3.61 7.47 31.18 0.23 -3.38 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.10 1.70 7.87 -2.39 -0.02 1.68 16 29 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.10 2.46 7.45 -2.39 -0.02 2.44 16 31 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 32 H 0.41 13.86 8.14 -92.70 -0.75 13.10 16 33 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.37 18.58 7.80 -92.71 -0.72 17.86 16 36 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 37 H 0.11 3.18 8.11 -2.39 -0.02 3.16 16 38 H 0.08 3.53 6.68 -2.39 -0.02 3.52 16 39 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 40 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 41 H 0.08 3.04 6.22 -2.39 -0.01 3.03 16 42 H 0.09 2.35 8.09 -2.38 -0.02 2.34 16 43 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -61.03 352.43 1.42 -59.61 By element: Atomic # 1 Polarization: 48.26 SS G_CDS: -0.47 Total: 47.80 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 4.69 Total: -6.76 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -3.21 Total: -113.97 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -1.63 Total: -32.83 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -61.03 1.42 -59.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690156804.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.028 kcal (2) G-P(sol) polarization free energy of solvation -61.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds