Wall clock time and date at job start Tue Mar 31 2020 05:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 120.00070 * 2 1 4 4 C 1.53003 * 109.47060 * 270.00131 * 3 2 1 5 5 C 1.52996 * 109.47301 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47059 * 179.97438 * 5 4 3 7 7 C 1.36943 * 119.99752 * 179.72430 * 6 5 4 8 8 H 1.08002 * 119.99793 * 0.27665 * 7 6 5 9 9 C 1.38811 * 120.00012 * 180.27737 * 7 6 5 10 10 N 1.31624 * 119.99698 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00072 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47159 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47290 * 120.00044 * 11 9 7 14 14 H 1.48503 * 109.47163 * 240.00049 * 11 9 7 15 15 C 1.34776 * 120.00652 * 179.97438 * 2 1 3 16 16 O 1.21277 * 120.00660 * 179.97438 * 15 2 1 17 17 C 1.50708 * 119.99288 * 359.97438 * 15 2 1 18 18 H 1.08994 * 115.56701 * 34.22040 * 17 15 2 19 19 C 1.53183 * 117.52184 * 248.35187 * 17 15 2 20 20 C 1.52096 * 59.77293 * 252.58485 * 19 17 15 21 21 C 1.53715 * 121.74762 * 111.08686 * 20 19 17 22 22 C 1.54699 * 103.69348 * 143.51572 * 21 20 19 23 23 O 1.44497 * 104.87152 * 23.83129 * 22 21 20 24 24 C 1.44643 * 105.46460 * 320.02702 * 23 22 21 25 25 H 1.08993 * 109.47579 * 90.00208 * 1 2 3 26 26 H 1.09001 * 109.46975 * 210.00249 * 1 2 3 27 27 H 1.09003 * 109.47131 * 329.99765 * 1 2 3 28 28 H 1.08990 * 109.47414 * 150.00114 * 3 2 1 29 29 H 1.09002 * 109.47037 * 29.99426 * 3 2 1 30 30 H 1.09004 * 109.47038 * 59.99597 * 4 3 2 31 31 H 1.09000 * 109.46939 * 300.00250 * 4 3 2 32 32 H 1.09004 * 109.47066 * 60.00027 * 5 4 3 33 33 H 1.08994 * 109.46974 * 300.00175 * 5 4 3 34 34 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 35 35 H 0.96999 * 119.99739 * 180.02562 * 10 9 7 36 36 H 1.09002 * 117.52573 * 0.02562 * 19 17 15 37 37 H 1.09002 * 117.52589 * 145.15569 * 19 17 15 38 38 H 1.08996 * 110.57506 * 262.06686 * 21 20 19 39 39 H 1.08999 * 110.57770 * 24.96324 * 21 20 19 40 40 H 1.08995 * 110.36447 * 142.67965 * 22 21 20 41 41 H 1.09003 * 110.35805 * 264.98448 * 22 21 20 42 42 H 1.09000 * 110.41256 * 280.88935 * 24 23 22 43 43 H 1.08994 * 110.41815 * 158.42980 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2169 3.0357 -1.4426 6 7 3.4616 3.4583 -2.8238 7 6 4.1294 4.6273 -3.0741 8 1 4.4797 5.2355 -2.2532 9 6 4.3562 5.0306 -4.3828 10 7 3.9288 4.2896 -5.3832 11 14 5.2679 6.6249 -4.7242 12 1 5.6404 7.2672 -3.4382 13 1 6.4965 6.3349 -5.5062 14 1 4.3920 7.5397 -5.4996 15 6 2.1390 -1.1671 0.0005 16 8 3.3517 -1.1671 0.0001 17 6 1.3854 -2.4723 0.0017 18 1 0.4459 -2.4735 -0.5509 19 6 1.4660 -3.3350 1.2649 20 6 2.2023 -3.7555 0.0022 21 6 3.7370 -3.7362 -0.0835 22 6 4.0712 -4.9765 -0.9455 23 8 2.8758 -5.2238 -1.7187 24 6 1.7741 -4.9864 -0.8121 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 3.1498 1.1385 0.5138 29 1 1.6084 2.0284 0.5138 30 1 1.5000 1.8407 -1.9564 31 1 3.0415 0.9508 -1.9564 32 1 4.1694 2.9058 -0.9287 33 1 2.6275 3.7951 -0.9289 34 1 3.1467 2.9123 -3.5611 35 1 4.0876 4.5713 -6.2977 36 1 2.0636 -2.9582 2.0950 37 1 0.5790 -3.9038 1.5439 38 1 4.0819 -2.8254 -0.5727 39 1 4.1773 -3.8296 0.9092 40 1 4.9124 -4.7644 -1.6053 41 1 4.2944 -5.8323 -0.3083 42 1 1.6297 -5.8449 -0.1562 43 1 0.8617 -4.7749 -1.3696 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699545813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:16 Heat of formation + Delta-G solvation = -38.380366 kcal Electronic energy + Delta-G solvation = -22201.544683 eV Core-core repulsion = 18862.213175 eV Total energy + Delta-G solvation = -3339.331507 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.81933 -39.11946 -36.52489 -35.70580 -34.80192 -32.23874 -30.48344 -29.84232 -27.77532 -26.94393 -25.76983 -23.84779 -22.91983 -22.30975 -20.90935 -20.13793 -18.92216 -17.31934 -17.01228 -16.47321 -16.10735 -15.84871 -15.48450 -15.06402 -14.71323 -14.46675 -14.07425 -13.57958 -13.41719 -13.19924 -13.05567 -12.85466 -12.72140 -12.56703 -12.35387 -11.94377 -11.82984 -11.64454 -11.15441 -10.90733 -10.84101 -10.77416 -10.68154 -10.38477 -10.26153 -10.01014 -9.93666 -9.69653 -9.41923 -8.83556 -8.67386 -6.87563 -5.72144 -3.00890 2.36562 2.87645 3.38258 3.46312 3.51473 3.54152 3.77818 4.06516 4.31219 4.43337 4.62539 4.64078 4.76989 4.94180 5.00873 5.15383 5.20279 5.21505 5.23261 5.29583 5.31822 5.43913 5.49346 5.54576 5.58109 5.60799 5.63238 5.71728 5.80949 5.93030 6.09984 6.27051 6.33487 6.42329 6.56352 6.57919 6.89471 6.92006 7.32920 7.74125 8.15629 8.46756 9.57535 10.16366 10.50956 11.51020 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022571 B = 0.003096 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.258609 B = 9040.669218 C = 9735.828046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.119 3.881 4 C -0.139 4.139 5 C 0.157 3.843 6 N -0.734 5.734 7 C -0.238 4.238 8 H 0.071 0.929 9 C -0.016 4.016 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.292 1.292 15 C 0.542 3.458 16 O -0.528 6.528 17 C -0.172 4.172 18 H 0.126 0.874 19 C -0.134 4.134 20 C -0.129 4.129 21 C -0.129 4.129 22 C 0.044 3.956 23 O -0.373 6.373 24 C 0.082 3.918 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.020 0.980 33 H 0.018 0.982 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.594 -19.092 15.771 26.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.344 5.344 3 C -0.003 4.003 4 C -0.178 4.178 5 C 0.029 3.971 6 N -0.378 5.378 7 C -0.369 4.369 8 H 0.089 0.911 9 C -0.212 4.212 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.219 1.219 15 C 0.330 3.670 16 O -0.405 6.405 17 C -0.194 4.194 18 H 0.144 0.856 19 C -0.171 4.171 20 C -0.130 4.130 21 C -0.166 4.166 22 C -0.032 4.032 23 O -0.291 6.291 24 C 0.006 3.994 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.868 -18.982 15.581 26.110 hybrid contribution 0.140 0.894 -0.378 0.981 sum -8.728 -18.088 15.203 25.189 Atomic orbital electron populations 1.21824 0.79579 1.03043 1.02127 1.47852 1.07055 1.06209 1.73291 1.21523 0.97454 0.83276 0.98048 1.22054 1.01080 0.98958 0.95676 1.20536 0.95997 0.91888 0.88718 1.42367 1.68533 1.25766 1.01113 1.19298 1.27900 0.97909 0.91832 0.91104 1.24762 1.01795 0.99073 0.95565 1.69682 1.51661 1.38807 0.98123 0.86097 0.79148 0.83103 0.77746 1.20543 1.21848 1.21884 1.19617 0.87311 0.84157 0.75874 1.90618 1.13713 1.86602 1.49553 1.22243 1.01899 0.90428 1.04785 0.85636 1.22895 1.02599 1.00846 0.90776 1.22162 0.95763 0.94694 1.00382 1.22731 0.91667 1.00848 1.01379 1.23528 0.88830 0.96349 0.94514 1.89181 1.15131 1.90283 1.34552 1.22788 0.91091 0.93986 0.91579 0.92397 0.91070 0.90802 0.89801 0.90497 0.92021 0.91597 0.96247 0.96443 0.78316 0.93588 0.87861 0.87441 0.86599 0.90556 0.88910 0.92568 0.91438 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 10.05 59.84 0.60 1.23 16 2 N -0.61 -7.39 2.87 -181.57 -0.52 -7.91 16 3 C 0.12 1.65 5.45 -4.04 -0.02 1.63 16 4 C -0.14 -2.42 5.65 -26.73 -0.15 -2.57 16 5 C 0.16 3.32 6.26 -4.04 -0.03 3.30 16 6 N -0.73 -19.72 5.60 -59.91 -0.34 -20.06 16 7 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 9 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 10 N -0.93 -29.24 13.06 55.49 0.72 -28.52 16 11 Si 0.91 23.02 29.55 -169.99 -5.02 18.00 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 14 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 15 C 0.54 7.20 7.46 -10.98 -0.08 7.12 16 16 O -0.53 -8.84 12.92 5.56 0.07 -8.77 16 17 C -0.17 -1.67 4.68 -92.12 -0.43 -2.10 16 18 H 0.13 0.97 7.26 -51.93 -0.38 0.60 16 19 C -0.13 -1.00 10.01 -27.10 -0.27 -1.27 16 20 C -0.13 -1.26 2.50 -154.69 -0.39 -1.65 16 21 C -0.13 -1.46 5.95 -25.47 -0.15 -1.61 16 22 C 0.04 0.46 7.65 38.05 0.29 0.75 16 23 O -0.37 -4.55 11.65 -35.23 -0.41 -4.96 16 24 C 0.08 0.74 7.44 37.51 0.28 1.02 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.42 6.64 -51.93 -0.34 0.08 16 27 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16 28 H 0.08 1.26 7.42 -51.93 -0.39 0.88 16 29 H 0.08 0.90 7.89 -51.93 -0.41 0.49 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.38 10.85 7.67 -40.82 -0.31 10.53 16 35 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.12 1.69 5.48 -51.93 -0.28 1.41 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.71 8.12 -51.93 -0.42 0.29 16 LS Contribution 349.66 15.07 5.27 5.27 Total: -1.00 -34.98 349.66 -7.96 -42.95 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.14 Total: 5.84 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -0.60 Total: -1.84 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.13 Total: -56.48 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.34 Total: -13.73 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.98 -7.96 -42.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699545813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.565 kcal (2) G-P(sol) polarization free energy of solvation -34.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds