Wall clock time and date at job start Tue Mar 31 2020 05:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 120.00070 * 2 1 4 4 C 1.53003 * 109.47060 * 270.00131 * 3 2 1 5 5 C 1.52996 * 109.47301 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47059 * 179.97438 * 5 4 3 7 7 C 1.36943 * 119.99752 * 179.72430 * 6 5 4 8 8 H 1.08002 * 119.99793 * 0.27665 * 7 6 5 9 9 C 1.38811 * 120.00012 * 180.27737 * 7 6 5 10 10 N 1.31624 * 119.99698 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00072 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47159 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47290 * 120.00044 * 11 9 7 14 14 H 1.48503 * 109.47163 * 240.00049 * 11 9 7 15 15 C 1.34776 * 120.00652 * 179.97438 * 2 1 3 16 16 O 1.21277 * 120.00660 * 179.97438 * 15 2 1 17 17 C 1.50708 * 119.99288 * 359.97438 * 15 2 1 18 18 H 1.08994 * 115.56701 * 34.22040 * 17 15 2 19 19 C 1.53183 * 117.52184 * 248.35187 * 17 15 2 20 20 C 1.52096 * 59.77293 * 252.58485 * 19 17 15 21 21 C 1.53715 * 121.74762 * 111.08686 * 20 19 17 22 22 C 1.54699 * 103.69348 * 143.51572 * 21 20 19 23 23 O 1.44497 * 104.87152 * 23.83129 * 22 21 20 24 24 C 1.44643 * 105.46460 * 320.02702 * 23 22 21 25 25 H 1.08993 * 109.47579 * 90.00208 * 1 2 3 26 26 H 1.09001 * 109.46975 * 210.00249 * 1 2 3 27 27 H 1.09003 * 109.47131 * 329.99765 * 1 2 3 28 28 H 1.08990 * 109.47414 * 150.00114 * 3 2 1 29 29 H 1.09002 * 109.47037 * 29.99426 * 3 2 1 30 30 H 1.09004 * 109.47038 * 59.99597 * 4 3 2 31 31 H 1.09000 * 109.46939 * 300.00250 * 4 3 2 32 32 H 1.09004 * 109.47066 * 60.00027 * 5 4 3 33 33 H 1.08994 * 109.46974 * 300.00175 * 5 4 3 34 34 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 35 35 H 0.96999 * 119.99739 * 180.02562 * 10 9 7 36 36 H 1.09002 * 117.52573 * 0.02562 * 19 17 15 37 37 H 1.09002 * 117.52589 * 145.15569 * 19 17 15 38 38 H 1.08996 * 110.57506 * 262.06686 * 21 20 19 39 39 H 1.08999 * 110.57770 * 24.96324 * 21 20 19 40 40 H 1.08995 * 110.36447 * 142.67965 * 22 21 20 41 41 H 1.09003 * 110.35805 * 264.98448 * 22 21 20 42 42 H 1.09000 * 110.41256 * 280.88935 * 24 23 22 43 43 H 1.08994 * 110.41815 * 158.42980 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2169 3.0357 -1.4426 6 7 3.4616 3.4583 -2.8238 7 6 4.1294 4.6273 -3.0741 8 1 4.4797 5.2355 -2.2532 9 6 4.3562 5.0306 -4.3828 10 7 3.9288 4.2896 -5.3832 11 14 5.2679 6.6249 -4.7242 12 1 5.6404 7.2672 -3.4382 13 1 6.4965 6.3349 -5.5062 14 1 4.3920 7.5397 -5.4996 15 6 2.1390 -1.1671 0.0005 16 8 3.3517 -1.1671 0.0001 17 6 1.3854 -2.4723 0.0017 18 1 0.4459 -2.4735 -0.5509 19 6 1.4660 -3.3350 1.2649 20 6 2.2023 -3.7555 0.0022 21 6 3.7370 -3.7362 -0.0835 22 6 4.0712 -4.9765 -0.9455 23 8 2.8758 -5.2238 -1.7187 24 6 1.7741 -4.9864 -0.8121 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 3.1498 1.1385 0.5138 29 1 1.6084 2.0284 0.5138 30 1 1.5000 1.8407 -1.9564 31 1 3.0415 0.9508 -1.9564 32 1 4.1694 2.9058 -0.9287 33 1 2.6275 3.7951 -0.9289 34 1 3.1467 2.9123 -3.5611 35 1 4.0876 4.5713 -6.2977 36 1 2.0636 -2.9582 2.0950 37 1 0.5790 -3.9038 1.5439 38 1 4.0819 -2.8254 -0.5727 39 1 4.1773 -3.8296 0.9092 40 1 4.9124 -4.7644 -1.6053 41 1 4.2944 -5.8323 -0.3083 42 1 1.6297 -5.8449 -0.1562 43 1 0.8617 -4.7749 -1.3696 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699545813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:15 Heat of formation + Delta-G solvation = -62.670339 kcal Electronic energy + Delta-G solvation = -22202.597975 eV Core-core repulsion = 18862.213175 eV Total energy + Delta-G solvation = -3340.384799 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.67556 -40.01864 -37.69106 -36.72583 -36.38743 -34.07420 -31.75673 -31.19290 -28.58544 -27.94176 -27.01630 -25.36703 -23.85666 -23.55808 -22.46586 -20.94690 -19.81090 -19.18974 -18.21539 -17.40269 -16.89273 -16.83572 -16.52846 -16.38527 -16.02789 -15.88141 -15.37239 -15.14401 -14.88969 -14.26416 -14.18628 -13.70889 -13.57459 -13.42127 -13.32822 -13.27959 -13.03908 -12.81331 -12.72826 -12.46853 -12.36567 -12.05479 -11.90255 -11.85808 -11.80912 -11.47590 -11.05166 -10.98920 -10.68799 -10.38918 -9.68653 -9.06332 -7.99042 -5.29682 1.43904 1.45255 1.47117 1.57383 1.97505 2.53547 2.65914 3.03328 3.33006 3.34500 3.58247 3.71259 3.83015 3.89149 3.98097 4.10369 4.20947 4.26580 4.38371 4.46808 4.48925 4.51917 4.58023 4.66448 4.69426 4.73403 4.74868 4.80543 4.84035 4.85212 4.94016 4.97875 5.05951 5.24629 5.26221 5.33304 5.45082 5.58341 5.82372 6.22920 6.40033 7.18660 7.28154 8.02805 8.26508 9.25100 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022571 B = 0.003096 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.258609 B = 9040.669218 C = 9735.828046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.612 5.612 3 C 0.128 3.872 4 C -0.121 4.121 5 C 0.155 3.845 6 N -0.750 5.750 7 C -0.250 4.250 8 H 0.078 0.922 9 C -0.079 4.079 10 N -0.972 5.972 11 Si 0.980 3.020 12 H -0.264 1.264 13 H -0.293 1.293 14 H -0.289 1.289 15 C 0.529 3.471 16 O -0.575 6.575 17 C -0.180 4.180 18 H 0.150 0.850 19 C -0.102 4.102 20 C -0.145 4.145 21 C -0.131 4.131 22 C 0.045 3.955 23 O -0.403 6.403 24 C 0.082 3.918 25 H 0.057 0.943 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.033 0.967 32 H 0.014 0.986 33 H 0.035 0.965 34 H 0.371 0.629 35 H 0.252 0.748 36 H 0.096 0.904 37 H 0.146 0.854 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.517 -19.505 17.635 28.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.344 5.344 3 C 0.004 3.996 4 C -0.160 4.160 5 C 0.028 3.972 6 N -0.393 5.393 7 C -0.381 4.381 8 H 0.096 0.904 9 C -0.271 4.271 10 N -0.623 5.623 11 Si 0.808 3.192 12 H -0.188 1.188 13 H -0.220 1.220 14 H -0.216 1.216 15 C 0.319 3.681 16 O -0.455 6.455 17 C -0.201 4.201 18 H 0.168 0.832 19 C -0.139 4.139 20 C -0.146 4.146 21 C -0.168 4.168 22 C -0.031 4.031 23 O -0.323 6.323 24 C 0.006 3.994 25 H 0.076 0.924 26 H 0.118 0.882 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.125 0.875 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.032 0.968 33 H 0.053 0.947 34 H 0.203 0.797 35 H 0.061 0.939 36 H 0.115 0.885 37 H 0.164 0.836 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.831 -19.396 17.498 28.279 hybrid contribution 0.741 1.003 -0.917 1.548 sum -10.090 -18.393 16.580 26.740 Atomic orbital electron populations 1.22115 0.76808 1.05340 1.02848 1.47967 1.08738 1.05135 1.72522 1.21319 0.97883 0.85153 0.95206 1.21854 0.99899 0.96054 0.98158 1.20701 0.96410 0.94041 0.86004 1.42631 1.68462 1.25241 1.02955 1.19730 1.27556 0.98590 0.92264 0.90387 1.25685 1.03198 1.02813 0.95396 1.69848 1.53285 1.40799 0.98334 0.84981 0.77426 0.78808 0.77971 1.18800 1.22018 1.21569 1.20394 0.87125 0.85671 0.74943 1.90616 1.15908 1.87406 1.51570 1.22308 1.02239 0.88333 1.07230 0.83230 1.23029 1.02948 0.98738 0.89174 1.22238 0.94538 0.95146 1.02695 1.22603 0.93568 0.99436 1.01222 1.23564 0.88367 0.96781 0.94422 1.89136 1.16384 1.90475 1.36283 1.23005 0.90436 0.94399 0.91566 0.92399 0.88222 0.89196 0.91513 0.87467 0.91638 0.94803 0.96847 0.94716 0.79728 0.93898 0.88514 0.83622 0.90577 0.90124 0.89765 0.90235 0.88948 0.87759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.94 10.05 127.77 1.28 2.23 16 2 N -0.61 -14.08 2.87 -846.76 -2.43 -16.51 16 3 C 0.13 3.46 5.45 86.38 0.47 3.93 16 4 C -0.12 -4.28 5.65 30.59 0.17 -4.10 16 5 C 0.16 6.64 6.26 86.38 0.54 7.18 16 6 N -0.75 -41.14 5.60 -343.46 -1.92 -43.06 16 7 C -0.25 -14.70 9.99 84.03 0.84 -13.86 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 9 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 10 N -0.97 -62.01 13.06 21.65 0.28 -61.73 16 11 Si 0.98 47.55 29.55 68.60 2.03 49.58 16 12 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 13 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 14 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 15 C 0.53 13.93 7.46 87.66 0.65 14.59 16 16 O -0.57 -20.26 12.92 -3.02 -0.04 -20.30 16 17 C -0.18 -3.13 4.68 -11.77 -0.06 -3.18 16 18 H 0.15 1.83 7.26 -2.39 -0.02 1.81 16 19 C -0.10 -1.19 10.01 30.36 0.30 -0.89 16 20 C -0.15 -2.61 2.50 -52.30 -0.13 -2.74 16 21 C -0.13 -3.04 5.95 31.41 0.19 -2.86 16 22 C 0.05 0.94 7.65 72.56 0.56 1.50 16 23 O -0.40 -9.65 11.65 -148.98 -1.74 -11.39 16 24 C 0.08 1.30 7.44 72.21 0.54 1.83 16 25 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.10 0.78 6.64 -2.39 -0.02 0.76 16 27 H 0.09 0.94 7.89 -2.39 -0.02 0.92 16 28 H 0.07 2.05 7.42 -2.39 -0.02 2.03 16 29 H 0.11 2.26 7.89 -2.39 -0.02 2.24 16 30 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 31 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.37 21.73 7.67 -92.71 -0.71 21.02 16 35 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 36 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.15 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.08 2.42 5.48 -2.39 -0.01 2.41 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.10 1.34 8.12 -2.39 -0.02 1.32 16 Total: -1.00 -78.68 349.66 2.29 -76.40 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.28 Total: 27.65 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 5.83 Total: -0.64 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -4.07 Total: -121.30 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -1.78 Total: -31.69 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -78.68 2.29 -76.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699545813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.725 kcal (2) G-P(sol) polarization free energy of solvation -78.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds