Wall clock time and date at job start Tue Mar 31 2020 05:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00148 * 2 1 4 4 C 1.52998 * 109.47174 * 179.97438 * 3 2 1 5 5 C 1.50695 * 115.55212 * 299.34163 * 4 3 2 6 6 O 1.21282 * 120.00176 * 114.29330 * 5 4 3 7 7 N 1.34780 * 120.00136 * 294.29399 * 5 4 3 8 8 C 1.46490 * 120.00287 * 175.98571 * 7 5 4 9 9 H 1.08998 * 109.47285 * 325.00168 * 8 7 5 10 10 C 1.52998 * 109.47496 * 204.99991 * 8 7 5 11 11 N 1.46501 * 109.46973 * 54.99932 * 10 8 7 12 12 C 1.36940 * 120.00252 * 179.97438 * 11 10 8 13 13 H 1.07997 * 119.99607 * 0.02562 * 12 11 10 14 14 C 1.38816 * 120.00013 * 180.02562 * 12 11 10 15 15 N 1.31620 * 120.00109 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99890 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47482 * 59.99516 * 16 14 12 18 18 H 1.48501 * 109.47232 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.46932 * 299.99539 * 16 14 12 20 20 C 1.53008 * 109.46963 * 85.00264 * 8 7 5 21 21 C 1.52998 * 117.49642 * 231.37760 * 20 8 7 22 22 C 1.52997 * 117.49613 * 299.99826 * 20 8 7 23 23 C 1.53003 * 117.49635 * 85.01191 * 4 3 2 24 24 C 1.53001 * 117.49469 * 153.66653 * 4 3 2 25 25 H 1.09001 * 109.47226 * 60.00156 * 1 2 3 26 26 H 1.09002 * 109.46920 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47275 * 299.99872 * 1 2 3 28 28 H 1.09001 * 109.46831 * 60.00228 * 3 2 1 29 29 H 1.08999 * 109.46916 * 300.00537 * 3 2 1 30 30 H 0.97006 * 119.99256 * 355.98944 * 7 5 4 31 31 H 1.08999 * 109.47607 * 174.99879 * 10 8 7 32 32 H 1.08994 * 109.47442 * 295.00563 * 10 8 7 33 33 H 0.97005 * 119.99870 * 0.02562 * 11 10 8 34 34 H 0.96999 * 120.00241 * 179.97438 * 15 14 12 35 35 H 1.08997 * 115.56181 * 85.69219 * 20 8 7 36 36 H 1.08996 * 117.49862 * 214.97843 * 21 20 8 37 37 H 1.09004 * 117.50056 * 0.02562 * 21 20 8 38 38 H 1.09002 * 117.50172 * 359.97438 * 22 20 8 39 39 H 1.08999 * 117.49717 * 145.02221 * 22 20 8 40 40 H 1.09000 * 117.49837 * 215.00127 * 23 4 3 41 41 H 1.09005 * 117.49987 * 0.02562 * 23 4 3 42 42 H 1.09000 * 117.50202 * 359.97438 * 24 4 3 43 43 H 1.09008 * 117.49705 * 144.97486 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1303 0.4694 1.1862 6 8 4.6999 -0.5902 1.0320 7 7 4.0294 1.0071 2.4179 8 6 4.5294 0.2713 3.5817 9 1 4.3640 -0.7961 3.4353 10 6 3.7865 0.7351 4.8362 11 7 2.3432 0.5914 4.6302 12 6 1.4709 0.9461 5.6244 13 1 1.8470 1.3323 6.5603 14 6 0.1034 0.8094 5.4294 15 7 -0.3550 0.3393 4.2886 16 14 -1.0865 1.2941 6.7853 17 1 -0.9119 2.7334 7.1061 18 1 -2.4796 1.0530 6.3310 19 1 -0.8139 0.4802 7.9973 20 6 6.0270 0.5371 3.7483 21 6 6.9487 -0.6762 3.8868 22 6 6.9477 0.1401 2.5927 23 6 4.2309 1.0109 -1.3511 24 6 4.3359 2.3413 -0.6013 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6885 1.8464 -0.8899 30 1 3.6255 1.8815 2.5337 31 1 4.0945 0.1268 5.6867 32 1 4.0230 1.7808 5.0328 33 1 2.0055 0.2442 3.7897 34 1 -1.3105 0.2434 4.1524 35 1 6.2857 1.4327 4.3131 36 1 7.8138 -0.5788 4.5426 37 1 6.4883 -1.6638 3.8588 38 1 6.4867 -0.3109 1.7139 39 1 7.8122 0.7745 2.3972 40 1 5.1187 0.3793 -1.3829 41 1 3.6018 0.9832 -2.2409 42 1 3.7759 3.1881 -0.9981 43 1 5.2927 2.5852 -0.1394 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699583646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:08 Heat of formation + Delta-G solvation = -16.953278 kcal Electronic energy + Delta-G solvation = -23429.149005 eV Core-core repulsion = 20090.746646 eV Total energy + Delta-G solvation = -3338.402359 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.09740 -38.10107 -36.93907 -35.80260 -34.95725 -33.28289 -31.04694 -28.38831 -27.73662 -25.34522 -24.13182 -23.11295 -22.44481 -22.01806 -21.44504 -19.99403 -19.32338 -17.29931 -16.85650 -16.18831 -15.85121 -15.60221 -15.11590 -14.92045 -14.80009 -14.33136 -14.10177 -13.53901 -13.21847 -13.12643 -12.78210 -12.25613 -12.14456 -11.95371 -11.63572 -11.56474 -11.21779 -11.06781 -10.97699 -10.89344 -10.80186 -10.57126 -10.22518 -10.20034 -10.00903 -9.88583 -9.66224 -9.39065 -9.22347 -8.90272 -8.50868 -6.94992 -5.77426 -3.06930 2.93172 3.38337 3.41983 3.46792 3.47214 3.56915 4.16116 4.19224 4.55709 4.72318 4.86904 4.95057 5.02869 5.15079 5.23829 5.34743 5.44190 5.49485 5.53673 5.55503 5.66879 5.77160 5.80385 5.86268 5.88877 5.90364 5.94690 5.96881 6.09213 6.13890 6.20914 6.27345 6.41951 6.54342 6.60405 6.72903 7.03520 7.46058 7.67647 7.99404 8.40005 8.67843 9.52031 10.08482 10.44804 11.44187 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.006570 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.853332 B = 4260.518262 C = 5988.277201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.105 3.895 4 C -0.155 4.155 5 C 0.563 3.437 6 O -0.539 6.539 7 N -0.702 5.702 8 C 0.170 3.830 9 H 0.086 0.914 10 C 0.148 3.852 11 N -0.731 5.731 12 C -0.242 4.242 13 H 0.069 0.931 14 C -0.011 4.011 15 N -0.928 5.928 16 Si 0.906 3.094 17 H -0.287 1.287 18 H -0.292 1.292 19 H -0.286 1.286 20 C -0.163 4.163 21 C -0.172 4.172 22 C -0.187 4.187 23 C -0.139 4.139 24 C -0.154 4.154 25 H 0.030 0.970 26 H 0.083 0.917 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.403 0.597 31 H 0.034 0.966 32 H 0.024 0.976 33 H 0.387 0.613 34 H 0.254 0.746 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.407 4.535 -9.791 14.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C 0.028 3.972 4 C -0.158 4.158 5 C 0.349 3.651 6 O -0.417 6.417 7 N -0.351 5.351 8 C 0.065 3.935 9 H 0.104 0.896 10 C 0.020 3.980 11 N -0.376 5.376 12 C -0.373 4.373 13 H 0.087 0.913 14 C -0.207 4.207 15 N -0.576 5.576 16 Si 0.737 3.263 17 H -0.214 1.214 18 H -0.218 1.218 19 H -0.213 1.213 20 C -0.182 4.182 21 C -0.210 4.210 22 C -0.224 4.224 23 C -0.176 4.176 24 C -0.192 4.192 25 H 0.049 0.951 26 H 0.102 0.898 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.237 0.763 31 H 0.052 0.948 32 H 0.042 0.958 33 H 0.222 0.778 34 H 0.064 0.936 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.139 0.861 39 H 0.099 0.901 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.815 3.651 -9.720 14.288 hybrid contribution -1.329 0.823 0.710 1.717 sum 8.486 4.475 -9.010 13.161 Atomic orbital electron populations 1.22742 0.80434 1.02909 1.00102 1.87928 1.20042 1.26489 1.95356 1.21824 0.88629 0.85937 1.00796 1.21356 0.94374 1.04729 0.95342 1.19131 0.78224 0.84662 0.83111 1.90550 1.43301 1.22542 1.85279 1.45850 1.61216 1.22339 1.05714 1.20787 0.89800 0.97300 0.85595 0.89614 1.20912 0.85912 0.97871 0.93304 1.42356 0.98890 1.78246 1.18097 1.19166 0.87453 1.35575 0.95081 0.91285 1.24721 0.96795 1.01968 0.97234 1.69672 1.12801 1.51480 1.23659 0.86292 0.80449 0.78136 0.81403 1.21368 1.21755 1.21319 1.22647 0.92709 0.99362 1.03520 1.22875 1.01390 0.96023 1.00668 1.23346 1.01159 1.03518 0.94398 1.22948 1.02565 0.98633 0.93453 1.23077 1.01124 0.92134 1.02821 0.95112 0.89846 0.92322 0.91788 0.93031 0.76295 0.94784 0.95827 0.77820 0.93609 0.88007 0.89321 0.88799 0.86075 0.90101 0.87803 0.88058 0.87861 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.66 16 2 O -0.38 -6.87 10.55 -35.23 -0.37 -7.24 16 3 C 0.11 1.58 5.77 37.16 0.21 1.79 16 4 C -0.15 -2.22 2.19 -155.66 -0.34 -2.56 16 5 C 0.56 9.75 6.38 -10.99 -0.07 9.68 16 6 O -0.54 -10.80 13.49 5.56 0.07 -10.72 16 7 N -0.70 -11.80 4.50 -53.81 -0.24 -12.04 16 8 C 0.17 2.99 2.42 -67.93 -0.16 2.83 16 9 H 0.09 1.74 7.40 -51.93 -0.38 1.36 16 10 C 0.15 2.95 5.80 -4.04 -0.02 2.92 16 11 N -0.73 -18.13 5.43 -59.91 -0.33 -18.46 16 12 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 13 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 14 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 15 N -0.93 -27.09 13.06 55.49 0.72 -26.37 16 16 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 C -0.16 -2.41 5.36 -90.62 -0.49 -2.90 16 21 C -0.17 -2.39 10.18 -26.73 -0.27 -2.66 16 22 C -0.19 -2.70 9.72 -26.73 -0.26 -2.96 16 23 C -0.14 -1.68 9.77 -26.69 -0.26 -1.94 16 24 C -0.15 -1.63 9.95 -26.69 -0.27 -1.89 16 25 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.63 8.11 -51.93 -0.42 0.21 16 30 H 0.40 6.48 8.61 -40.82 -0.35 6.13 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.39 10.32 7.33 -40.82 -0.30 10.02 16 34 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.10 1.40 8.11 -51.93 -0.42 0.97 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.09 1.38 8.05 -51.93 -0.42 0.96 16 38 H 0.12 2.03 4.84 -51.93 -0.25 1.78 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.10 1.32 8.00 -51.93 -0.42 0.91 16 41 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.10 1.03 8.14 -51.92 -0.42 0.60 16 LS Contribution 358.09 15.07 5.40 5.40 Total: -1.00 -31.43 358.09 -7.99 -39.42 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: -7.16 Total: 16.21 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -1.06 Total: -3.18 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: 0.16 Total: -56.86 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.30 Total: -17.96 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.43 -7.99 -39.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699583646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.463 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds