Wall clock time and date at job start Tue Mar 31 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00148 * 2 1 4 4 C 1.52998 * 109.47174 * 179.97438 * 3 2 1 5 5 C 1.50695 * 115.55212 * 299.34163 * 4 3 2 6 6 O 1.21282 * 120.00176 * 114.29330 * 5 4 3 7 7 N 1.34780 * 120.00136 * 294.29399 * 5 4 3 8 8 C 1.46490 * 120.00287 * 175.98571 * 7 5 4 9 9 H 1.08998 * 109.47285 * 325.00168 * 8 7 5 10 10 C 1.52998 * 109.47496 * 204.99991 * 8 7 5 11 11 N 1.46501 * 109.46973 * 54.99932 * 10 8 7 12 12 C 1.36940 * 120.00252 * 179.97438 * 11 10 8 13 13 H 1.07997 * 119.99607 * 0.02562 * 12 11 10 14 14 C 1.38816 * 120.00013 * 180.02562 * 12 11 10 15 15 N 1.31620 * 120.00109 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99890 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47482 * 59.99516 * 16 14 12 18 18 H 1.48501 * 109.47232 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.46932 * 299.99539 * 16 14 12 20 20 C 1.53008 * 109.46963 * 85.00264 * 8 7 5 21 21 C 1.52998 * 117.49642 * 231.37760 * 20 8 7 22 22 C 1.52997 * 117.49613 * 299.99826 * 20 8 7 23 23 C 1.53003 * 117.49635 * 85.01191 * 4 3 2 24 24 C 1.53001 * 117.49469 * 153.66653 * 4 3 2 25 25 H 1.09001 * 109.47226 * 60.00156 * 1 2 3 26 26 H 1.09002 * 109.46920 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47275 * 299.99872 * 1 2 3 28 28 H 1.09001 * 109.46831 * 60.00228 * 3 2 1 29 29 H 1.08999 * 109.46916 * 300.00537 * 3 2 1 30 30 H 0.97006 * 119.99256 * 355.98944 * 7 5 4 31 31 H 1.08999 * 109.47607 * 174.99879 * 10 8 7 32 32 H 1.08994 * 109.47442 * 295.00563 * 10 8 7 33 33 H 0.97005 * 119.99870 * 0.02562 * 11 10 8 34 34 H 0.96999 * 120.00241 * 179.97438 * 15 14 12 35 35 H 1.08997 * 115.56181 * 85.69219 * 20 8 7 36 36 H 1.08996 * 117.49862 * 214.97843 * 21 20 8 37 37 H 1.09004 * 117.50056 * 0.02562 * 21 20 8 38 38 H 1.09002 * 117.50172 * 359.97438 * 22 20 8 39 39 H 1.08999 * 117.49717 * 145.02221 * 22 20 8 40 40 H 1.09000 * 117.49837 * 215.00127 * 23 4 3 41 41 H 1.09005 * 117.49987 * 0.02562 * 23 4 3 42 42 H 1.09000 * 117.50202 * 359.97438 * 24 4 3 43 43 H 1.09008 * 117.49705 * 144.97486 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1303 0.4694 1.1862 6 8 4.6999 -0.5902 1.0320 7 7 4.0294 1.0071 2.4179 8 6 4.5294 0.2713 3.5817 9 1 4.3640 -0.7961 3.4353 10 6 3.7865 0.7351 4.8362 11 7 2.3432 0.5914 4.6302 12 6 1.4709 0.9461 5.6244 13 1 1.8470 1.3323 6.5603 14 6 0.1034 0.8094 5.4294 15 7 -0.3550 0.3393 4.2886 16 14 -1.0865 1.2941 6.7853 17 1 -0.9119 2.7334 7.1061 18 1 -2.4796 1.0530 6.3310 19 1 -0.8139 0.4802 7.9973 20 6 6.0270 0.5371 3.7483 21 6 6.9487 -0.6762 3.8868 22 6 6.9477 0.1401 2.5927 23 6 4.2309 1.0109 -1.3511 24 6 4.3359 2.3413 -0.6013 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6885 1.8464 -0.8899 30 1 3.6255 1.8815 2.5337 31 1 4.0945 0.1268 5.6867 32 1 4.0230 1.7808 5.0328 33 1 2.0055 0.2442 3.7897 34 1 -1.3105 0.2434 4.1524 35 1 6.2857 1.4327 4.3131 36 1 7.8138 -0.5788 4.5426 37 1 6.4883 -1.6638 3.8588 38 1 6.4867 -0.3109 1.7139 39 1 7.8122 0.7745 2.3972 40 1 5.1187 0.3793 -1.3829 41 1 3.6018 0.9832 -2.2409 42 1 3.7759 3.1881 -0.9981 43 1 5.2927 2.5852 -0.1394 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699583646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:07 Heat of formation + Delta-G solvation = -38.236261 kcal Electronic energy + Delta-G solvation = -23430.071904 eV Core-core repulsion = 20090.746646 eV Total energy + Delta-G solvation = -3339.325258 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.38212 -39.33059 -38.26504 -36.97224 -36.60827 -34.92512 -32.93893 -29.90115 -29.06613 -26.62625 -25.95278 -24.47270 -23.34473 -23.16356 -23.03223 -21.32775 -20.62533 -19.17430 -18.19372 -17.52206 -17.12892 -16.85627 -16.71574 -16.32260 -16.09518 -15.80749 -15.41164 -15.11508 -14.81674 -14.69894 -14.19559 -13.78871 -13.37179 -13.22301 -13.11511 -12.77255 -12.70911 -12.50946 -12.47423 -12.35945 -12.20249 -12.11239 -11.83680 -11.61113 -11.30933 -11.17636 -11.03601 -10.95840 -10.67257 -10.49027 -9.89904 -8.99668 -7.90766 -5.21309 1.48161 1.50728 1.56420 1.63999 2.15102 2.47474 2.56598 3.01941 3.10165 3.41447 3.57833 3.69578 3.76201 3.94919 3.99293 4.09842 4.13500 4.17616 4.33101 4.37096 4.46402 4.51424 4.57017 4.63316 4.68257 4.73145 4.81759 4.84879 4.89542 4.90828 4.98353 5.04782 5.11451 5.21362 5.29005 5.40751 5.51220 5.62889 6.23952 6.27917 6.65076 7.34091 7.35475 8.07513 8.33150 9.30832 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.006570 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.853332 B = 4260.518262 C = 5988.277201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.412 6.412 3 C 0.106 3.894 4 C -0.184 4.184 5 C 0.557 3.443 6 O -0.574 6.574 7 N -0.699 5.699 8 C 0.180 3.820 9 H 0.050 0.950 10 C 0.151 3.849 11 N -0.742 5.742 12 C -0.249 4.249 13 H 0.077 0.923 14 C -0.068 4.068 15 N -0.959 5.959 16 Si 0.971 3.029 17 H -0.276 1.276 18 H -0.297 1.297 19 H -0.283 1.283 20 C -0.164 4.164 21 C -0.167 4.167 22 C -0.182 4.182 23 C -0.136 4.136 24 C -0.120 4.120 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.029 0.971 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.406 0.594 31 H 0.034 0.966 32 H 0.041 0.959 33 H 0.374 0.626 34 H 0.249 0.751 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.119 0.881 42 H 0.133 0.867 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.479 6.513 -10.021 15.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.332 6.332 3 C 0.029 3.971 4 C -0.188 4.188 5 C 0.344 3.656 6 O -0.454 6.454 7 N -0.348 5.348 8 C 0.075 3.925 9 H 0.068 0.932 10 C 0.024 3.976 11 N -0.385 5.385 12 C -0.380 4.380 13 H 0.094 0.906 14 C -0.262 4.262 15 N -0.609 5.609 16 Si 0.800 3.200 17 H -0.202 1.202 18 H -0.223 1.223 19 H -0.209 1.209 20 C -0.184 4.184 21 C -0.204 4.204 22 C -0.219 4.219 23 C -0.174 4.174 24 C -0.157 4.157 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.241 0.759 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.207 0.793 34 H 0.058 0.942 35 H 0.141 0.859 36 H 0.135 0.865 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.124 0.876 40 H 0.110 0.890 41 H 0.137 0.863 42 H 0.151 0.849 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.921 5.657 -9.927 15.805 hybrid contribution -1.613 0.170 0.779 1.799 sum 9.308 5.826 -9.147 14.292 Atomic orbital electron populations 1.22736 0.79750 1.03044 1.00333 1.87887 1.21039 1.28734 1.95521 1.21953 0.88918 0.84756 1.01458 1.21356 0.94140 1.08113 0.95144 1.19715 0.77595 0.84372 0.83874 1.90532 1.44941 1.24076 1.85857 1.45826 1.61086 1.22273 1.05582 1.20532 0.91763 0.95238 0.85012 0.93214 1.21025 0.83511 0.98683 0.94409 1.42506 1.00763 1.78130 1.17110 1.19557 0.88127 1.34691 0.95669 0.90555 1.25512 0.98499 1.02726 0.99413 1.69839 1.12623 1.52960 1.25464 0.85258 0.77817 0.78188 0.78689 1.20205 1.22343 1.20926 1.22555 0.90542 1.00697 1.04582 1.22959 1.01741 0.94864 1.00870 1.23275 1.01445 1.03729 0.93448 1.23034 1.01931 0.99633 0.92774 1.23249 1.00628 0.91768 1.00005 0.91619 0.89909 0.95176 0.93679 0.89573 0.75889 0.94816 0.94082 0.79344 0.94175 0.85937 0.86503 0.90436 0.88597 0.87615 0.88967 0.86283 0.84868 0.87232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.20 11.01 113.37 1.25 2.45 16 2 O -0.41 -15.20 10.55 -148.98 -1.57 -16.78 16 3 C 0.11 3.11 5.77 71.98 0.42 3.53 16 4 C -0.18 -5.14 2.19 -52.93 -0.12 -5.25 16 5 C 0.56 19.66 6.38 87.65 0.56 20.22 16 6 O -0.57 -23.89 13.49 -3.04 -0.04 -23.93 16 7 N -0.70 -23.84 4.50 -442.55 -1.99 -25.83 16 8 C 0.18 6.43 2.42 45.00 0.11 6.54 16 9 H 0.05 2.14 7.40 -2.39 -0.02 2.12 16 10 C 0.15 5.98 5.80 86.38 0.50 6.49 16 11 N -0.74 -37.47 5.43 -343.46 -1.87 -39.34 16 12 C -0.25 -13.66 9.99 84.03 0.84 -12.82 16 13 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 14 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 15 N -0.96 -57.39 13.06 21.65 0.28 -57.10 16 16 Si 0.97 45.44 29.55 68.60 2.03 47.47 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 18 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 C -0.16 -4.67 5.36 -10.79 -0.06 -4.73 16 21 C -0.17 -4.43 10.18 30.59 0.31 -4.12 16 22 C -0.18 -5.02 9.72 30.59 0.30 -4.72 16 23 C -0.14 -3.06 9.77 30.62 0.30 -2.76 16 24 C -0.12 -2.18 9.95 30.62 0.30 -1.88 16 25 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.09 1.90 8.11 -2.39 -0.02 1.89 16 30 H 0.41 13.15 8.61 -92.70 -0.80 12.35 16 31 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.37 20.70 7.33 -92.70 -0.68 20.02 16 34 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 35 H 0.12 3.02 8.11 -2.39 -0.02 3.00 16 36 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.08 2.31 8.05 -2.38 -0.02 2.29 16 38 H 0.10 3.24 4.84 -2.39 -0.01 3.23 16 39 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.09 2.29 8.00 -2.39 -0.02 2.27 16 41 H 0.12 2.22 8.14 -2.38 -0.02 2.20 16 42 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -69.76 358.09 1.55 -68.21 By element: Atomic # 1 Polarization: 48.22 SS G_CDS: -0.47 Total: 47.75 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 5.18 Total: -0.45 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -3.57 Total: -122.28 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -1.61 Total: -40.70 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -69.76 1.55 -68.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699583646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.971 kcal (2) G-P(sol) polarization free energy of solvation -69.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds