Wall clock time and date at job start Tue Mar 31 2020 05:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.50694 * 109.47248 * 270.27463 * 3 2 1 5 5 H 1.07999 * 119.99904 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00385 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99650 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00268 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47383 * 60.00120 * 8 6 4 10 10 H 1.48498 * 109.47096 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46971 * 299.99969 * 8 6 4 12 12 C 1.34784 * 119.99864 * 180.27290 * 2 1 3 13 13 O 1.21279 * 119.99925 * 179.72608 * 12 2 1 14 14 C 1.50700 * 119.99961 * 359.72839 * 12 2 1 15 15 C 1.52992 * 109.47257 * 180.02562 * 14 12 2 16 16 N 1.46898 * 109.47518 * 179.97438 * 15 14 12 17 17 C 1.46851 * 110.99943 * 294.21177 * 16 15 14 18 18 C 1.53038 * 109.52634 * 174.15970 * 17 16 15 19 19 C 1.53119 * 109.27881 * 59.17275 * 18 17 16 20 20 C 1.53003 * 109.52135 * 182.44313 * 19 18 17 21 21 C 1.53007 * 109.51800 * 62.25547 * 19 18 17 22 22 C 1.53116 * 109.16348 * 302.35223 * 19 18 17 23 23 C 1.46843 * 111.00396 * 169.99868 * 16 15 14 24 24 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 25 25 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 26 26 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 27 27 H 1.09003 * 109.47006 * 30.27410 * 3 2 1 28 28 H 1.09004 * 109.47665 * 150.27102 * 3 2 1 29 29 H 0.96998 * 120.00151 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.46932 * 300.00223 * 14 12 2 31 31 H 1.08997 * 109.47392 * 59.99562 * 14 12 2 32 32 H 1.09004 * 109.47330 * 299.99977 * 15 14 12 33 33 H 1.09005 * 109.47124 * 59.99773 * 15 14 12 34 34 H 1.09001 * 109.45986 * 294.17627 * 17 16 15 35 35 H 1.09004 * 109.46030 * 54.13830 * 17 16 15 36 36 H 1.09001 * 109.50073 * 299.23585 * 18 17 16 37 37 H 1.08998 * 109.53529 * 179.13846 * 18 17 16 38 38 H 1.08997 * 109.46576 * 179.68711 * 20 19 18 39 39 H 1.09001 * 109.47084 * 299.68362 * 20 19 18 40 40 H 1.08995 * 109.46877 * 59.68788 * 20 19 18 41 41 H 1.08997 * 109.47085 * 300.31451 * 21 19 18 42 42 H 1.08996 * 109.46977 * 60.31668 * 21 19 18 43 43 H 1.09004 * 109.46579 * 180.31631 * 21 19 18 44 44 H 1.09001 * 109.49970 * 297.71017 * 22 19 18 45 45 H 1.08993 * 109.50135 * 177.59695 * 22 19 18 46 46 H 1.08994 * 109.46212 * 305.85759 * 23 16 15 47 47 H 1.09005 * 109.45943 * 65.83431 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4428 1.7070 -1.4207 5 1 2.0888 1.1010 -2.2416 6 6 3.1192 2.8818 -1.6727 7 7 3.5507 3.6195 -0.6731 8 14 3.4226 3.4256 -3.4338 9 1 2.1220 3.6047 -4.1277 10 1 4.1653 4.7115 -3.4338 11 1 4.2224 2.3926 -4.1400 12 6 2.1388 -1.1673 -0.0056 13 8 3.3516 -1.1673 -0.0106 14 6 1.3853 -2.4724 -0.0056 15 6 2.3794 -3.6353 -0.0118 16 7 1.6450 -4.9075 -0.0112 17 6 0.9000 -5.0844 1.2419 18 6 0.0353 -6.3437 1.1494 19 6 0.9341 -7.5564 0.8924 20 6 0.0701 -8.8097 0.7383 21 6 1.8960 -7.7382 2.0684 22 6 1.7346 -7.3255 -0.3923 23 6 2.5500 -6.0378 -0.2551 24 1 -0.3634 -0.0049 1.0276 25 1 -0.3634 0.8924 -0.5096 26 1 -0.3634 -0.8874 -0.5181 27 1 1.6106 2.0271 0.5181 28 1 3.1521 1.1371 0.5096 29 1 4.0262 4.4462 -0.8503 30 1 0.7623 -2.5322 0.8868 31 1 0.7549 -2.5280 -0.8930 32 1 3.0028 -3.5756 -0.9040 33 1 3.0094 -3.5794 0.8760 34 1 1.6014 -5.1855 2.0701 35 1 0.2617 -4.2171 1.4105 36 1 -0.6756 -6.2376 0.3300 37 1 -0.5060 -6.4837 2.0850 38 1 0.7105 -9.6714 0.5499 39 1 -0.4992 -8.9733 1.6533 40 1 -0.6162 -8.6773 -0.0980 41 1 2.5086 -6.8434 2.1784 42 1 1.3253 -7.9025 2.9824 43 1 2.5392 -8.5983 1.8820 44 1 1.0504 -7.2349 -1.2360 45 1 2.4077 -8.1667 -0.5577 46 1 3.1101 -5.8630 -1.1736 47 1 3.2435 -6.1345 0.5803 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061819956.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:09 Heat of formation + Delta-G solvation = -71.587048 kcal Electronic energy + Delta-G solvation = -22891.868146 eV Core-core repulsion = 19686.929783 eV Total energy + Delta-G solvation = -3204.938362 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.98396 -40.31391 -36.83042 -36.39275 -34.74286 -32.49665 -31.71422 -29.90511 -28.39193 -28.18105 -27.24005 -25.33466 -24.28688 -23.48300 -22.07956 -19.90349 -19.20808 -18.70380 -17.99942 -17.11496 -16.78266 -16.44032 -16.23558 -15.79092 -15.59202 -15.32012 -15.09279 -14.89470 -14.47413 -13.97149 -13.88533 -13.54931 -13.44857 -13.31287 -13.23955 -12.96364 -12.84474 -12.79651 -12.71384 -12.56651 -12.43881 -12.32450 -12.19424 -12.03846 -11.91504 -11.72498 -11.38681 -11.09537 -10.97404 -10.65142 -10.60445 -9.42023 -9.25351 -8.23225 -6.38487 1.35949 1.40578 1.47884 1.83620 2.28550 2.42112 2.98222 3.06135 3.74197 3.81261 3.88367 3.92109 3.99227 4.15828 4.33914 4.36039 4.40993 4.48380 4.53939 4.59451 4.67656 4.72932 4.77777 4.84039 4.87614 4.91512 4.94955 4.97181 5.00538 5.03439 5.05975 5.09889 5.17981 5.19737 5.22075 5.32418 5.43584 5.45549 5.55503 5.59695 5.83815 6.05365 6.07781 6.18959 6.68714 6.79070 7.27268 7.48257 8.83749 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035179 B = 0.003033 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.743242 B = 9230.819655 C = 9451.211337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.494 3.506 13 O -0.602 6.602 14 C -0.113 4.113 15 C 0.081 3.919 16 N -0.535 5.535 17 C 0.045 3.955 18 C -0.100 4.100 19 C -0.069 4.069 20 C -0.135 4.135 21 C -0.144 4.144 22 C -0.099 4.099 23 C 0.051 3.949 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.024 0.976 28 H -0.004 1.004 29 H 0.268 0.732 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.061 0.939 33 H 0.021 0.979 34 H 0.029 0.971 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.042 0.958 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.145 -23.946 3.663 26.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.136 3.864 4 C -0.583 4.583 5 H 0.072 0.928 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.183 1.183 10 H -0.203 1.203 11 H -0.203 1.203 12 C 0.283 3.717 13 O -0.484 6.484 14 C -0.153 4.153 15 C -0.048 4.048 16 N -0.260 5.260 17 C -0.083 4.083 18 C -0.137 4.137 19 C -0.069 4.069 20 C -0.192 4.192 21 C -0.201 4.201 22 C -0.136 4.136 23 C -0.077 4.077 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.113 0.887 27 H 0.042 0.958 28 H 0.014 0.986 29 H 0.076 0.924 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.080 0.920 33 H 0.040 0.960 34 H 0.047 0.953 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -10.803 -23.752 3.339 26.306 hybrid contribution 1.354 0.962 -0.019 1.660 sum -9.449 -22.790 3.320 24.894 Atomic orbital electron populations 1.21941 0.77739 1.04060 1.02620 1.48206 1.08510 1.06363 1.71158 1.18748 0.91057 0.80526 0.96031 1.21689 1.36975 1.06578 0.93050 0.92849 1.25894 0.94831 0.96420 1.02134 1.70047 1.38852 1.14858 1.33173 0.85450 0.78911 0.77348 0.79004 1.18321 1.20260 1.20336 1.21398 0.87787 0.86764 0.75781 1.90628 1.16815 1.88298 1.52708 1.21547 0.98822 0.88796 1.06162 1.21586 0.94276 0.88417 1.00492 1.61946 1.27538 1.01071 1.35466 1.22307 0.96899 0.99693 0.89392 1.21628 0.97237 0.92332 1.02544 1.20621 0.95604 0.95742 0.94913 1.21796 0.99283 0.96146 1.02020 1.21954 0.99095 1.01141 0.97887 1.21617 0.98738 0.95434 0.97861 1.22165 0.94197 0.91049 1.00288 0.91052 0.91639 0.88675 0.95839 0.98609 0.92361 0.86800 0.86671 0.92028 0.96043 0.95285 0.89981 0.91046 0.90385 0.92375 0.92142 0.92421 0.93876 0.92094 0.92338 0.91239 0.90678 0.91434 0.95166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.35 10.24 127.77 1.31 3.66 16 2 N -0.61 -26.54 2.86 -851.16 -2.43 -28.97 16 3 C 0.26 14.32 5.16 85.63 0.44 14.76 16 4 C -0.54 -32.12 9.39 25.60 0.24 -31.88 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.36 5.46 84.66 0.46 0.82 16 7 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 8 Si 0.97 45.59 29.54 68.60 2.03 47.61 16 9 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 12 C 0.49 21.03 7.67 87.66 0.67 21.71 16 13 O -0.60 -32.22 15.56 -3.03 -0.05 -32.26 16 14 C -0.11 -3.25 4.19 29.85 0.12 -3.13 16 15 C 0.08 2.37 4.25 86.30 0.37 2.73 16 16 N -0.54 -12.23 4.66 -896.36 -4.17 -16.40 16 17 C 0.04 0.85 5.04 86.33 0.44 1.28 16 18 C -0.10 -1.47 4.88 30.65 0.15 -1.32 16 19 C -0.07 -0.96 0.77 -52.10 -0.04 -1.00 16 20 C -0.14 -1.50 8.49 71.98 0.61 -0.89 16 21 C -0.14 -2.05 7.90 71.98 0.57 -1.48 16 22 C -0.10 -1.57 4.88 30.65 0.15 -1.43 16 23 C 0.05 1.06 5.21 86.33 0.45 1.51 16 24 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.06 2.08 8.07 -2.39 -0.02 2.06 16 26 H 0.09 2.16 6.44 -2.39 -0.02 2.15 16 27 H 0.02 1.32 8.07 -2.39 -0.02 1.30 16 28 H 0.00 -0.27 7.42 -2.38 -0.02 -0.29 16 29 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 30 H 0.11 2.61 6.39 -2.38 -0.02 2.59 16 31 H 0.12 2.90 7.39 -2.39 -0.02 2.89 16 32 H 0.06 2.05 7.95 -2.38 -0.02 2.03 16 33 H 0.02 0.70 8.08 -2.38 -0.02 0.68 16 34 H 0.03 0.59 6.51 -2.39 -0.02 0.58 16 35 H 0.08 1.45 6.21 -2.38 -0.01 1.44 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.04 0.75 4.92 -2.39 -0.01 0.73 16 42 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 43 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 44 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.07 1.48 8.02 -2.39 -0.02 1.46 16 47 H 0.03 0.66 6.51 -2.38 -0.02 0.64 16 Total: -1.00 -73.92 360.29 2.51 -71.41 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.91 Total: 10.27 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 5.94 Total: 5.34 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -6.32 Total: -102.36 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -0.05 Total: -32.26 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -73.92 2.51 -71.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061819956.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.179 kcal (2) G-P(sol) polarization free energy of solvation -73.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds