Wall clock time and date at job start Tue Mar 31 2020 05:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 111.00799 * 2 1 4 4 C 1.46898 * 110.99699 * 123.95933 * 2 1 3 5 5 C 1.52998 * 109.47562 * 66.03967 * 4 2 1 6 6 C 1.53000 * 109.47484 * 179.97438 * 5 4 2 7 7 N 1.46494 * 109.47257 * 180.02562 * 6 5 4 8 8 C 1.46500 * 120.00020 * 90.00257 * 7 6 5 9 9 C 1.50706 * 109.46949 * 89.99910 * 8 7 6 10 10 H 1.07995 * 120.00167 * 359.72205 * 9 8 7 11 11 C 1.37879 * 119.99394 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 8 14 14 H 1.48490 * 109.47405 * 60.00219 * 13 11 9 15 15 H 1.48503 * 109.46845 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47399 * 299.99813 * 13 11 9 17 17 C 1.34777 * 119.99857 * 269.99930 * 7 6 5 18 18 O 1.21280 * 120.00078 * 0.02562 * 17 7 6 19 19 C 1.50704 * 119.99819 * 180.02562 * 17 7 6 20 20 H 1.08998 * 115.55072 * 325.58662 * 19 17 7 21 21 C 1.53008 * 117.49638 * 111.25461 * 19 17 7 22 22 C 1.52998 * 117.49627 * 179.91187 * 19 17 7 23 23 C 1.52996 * 117.50324 * 0.02562 * 22 19 17 24 24 C 1.53005 * 117.49500 * 145.02275 * 22 19 17 25 25 H 1.09000 * 109.46741 * 296.05072 * 1 2 3 26 26 H 1.09003 * 109.46650 * 56.04023 * 1 2 3 27 27 H 1.08995 * 109.47892 * 176.04315 * 1 2 3 28 28 H 1.08994 * 109.47909 * 183.95418 * 3 2 1 29 29 H 1.08999 * 109.46889 * 303.95923 * 3 2 1 30 30 H 1.09006 * 109.46793 * 63.94699 * 3 2 1 31 31 H 1.09001 * 109.46921 * 306.04145 * 4 2 1 32 32 H 1.09005 * 109.47246 * 186.04073 * 4 2 1 33 33 H 1.09001 * 109.46857 * 60.00140 * 5 4 2 34 34 H 1.08999 * 109.47139 * 299.99933 * 5 4 2 35 35 H 1.09000 * 109.46784 * 59.99691 * 6 5 4 36 36 H 1.09002 * 109.47475 * 300.00602 * 6 5 4 37 37 H 1.09000 * 109.47175 * 329.99936 * 8 7 6 38 38 H 1.09001 * 109.47297 * 209.99443 * 8 7 6 39 39 H 0.96996 * 119.99730 * 179.97438 * 12 11 9 40 40 H 1.09000 * 117.49330 * 214.97486 * 21 19 17 41 41 H 1.09000 * 117.49755 * 359.97438 * 21 19 17 42 42 H 1.08998 * 109.47078 * 59.99556 * 23 22 19 43 43 H 1.09000 * 109.47645 * 180.02562 * 23 22 19 44 44 H 1.09007 * 109.47127 * 299.99946 * 23 22 19 45 45 H 1.09000 * 109.47522 * 60.00172 * 24 22 19 46 46 H 1.09008 * 109.46871 * 179.97438 * 24 22 19 47 47 H 1.09000 * 109.47194 * 299.99575 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.9953 -0.7661 1.1375 5 6 1.6312 -2.2427 0.9703 6 6 2.1800 -3.0407 2.1548 7 7 1.8319 -4.4546 1.9943 8 6 2.7402 -5.3563 1.2814 9 6 3.7116 -5.9666 2.2588 10 1 3.6606 -5.7051 3.3054 11 6 4.6687 -6.8547 1.8158 12 7 4.7343 -7.1688 0.5405 13 14 5.8722 -7.6117 3.0274 14 1 5.1234 -8.3755 4.0573 15 1 6.7930 -8.5256 2.3047 16 1 6.6576 -6.5353 3.6830 17 6 0.6760 -4.9258 2.5025 18 8 -0.0761 -4.1793 3.0923 19 6 0.3181 -6.3805 2.3379 20 1 0.6406 -6.8412 1.4042 21 6 0.3180 -7.2544 3.5939 22 6 -1.0066 -6.8544 2.9391 23 6 -1.8669 -5.8153 3.6608 24 6 -1.7770 -7.9393 2.1838 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5741 -0.8524 27 1 -0.3635 -1.0251 -0.0709 28 1 3.0829 1.3431 -0.0709 29 1 1.5899 1.9162 -0.8524 30 1 1.7044 1.8723 0.9233 31 1 1.5610 -0.3873 2.0627 32 1 3.0797 -0.6613 1.1756 33 1 2.0656 -2.6214 0.0451 34 1 0.5470 -2.3475 0.9323 35 1 1.7461 -2.6620 3.0802 36 1 3.2643 -2.9358 2.1924 37 1 3.2896 -4.7954 0.5254 38 1 2.1641 -6.1467 0.8003 39 1 5.4079 -7.7933 0.2289 40 1 0.6399 -8.2902 3.4862 41 1 0.5772 -6.7773 4.5390 42 1 -2.1343 -5.0192 2.9659 43 1 -2.7733 -6.2908 4.0354 44 1 -1.3056 -5.3955 4.4956 45 1 -1.1602 -8.8345 2.1042 46 1 -2.6936 -8.1769 2.7240 47 1 -2.0261 -7.5798 1.1854 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121021216.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:32 Heat of formation + Delta-G solvation = -17.357419 kcal Electronic energy + Delta-G solvation = -23256.053160 eV Core-core repulsion = 20053.466371 eV Total energy + Delta-G solvation = -3202.586789 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.64779 -37.74997 -36.76504 -34.98471 -32.85453 -31.51280 -29.01794 -27.60513 -27.37824 -27.06502 -26.04277 -23.63272 -22.95346 -21.75069 -20.57368 -19.12430 -17.73974 -16.51557 -16.43636 -15.69675 -15.40450 -14.96904 -14.65331 -14.50620 -14.18290 -13.91297 -13.46737 -13.35097 -13.22839 -12.55791 -12.40998 -12.24752 -12.13841 -12.05194 -11.78495 -11.70123 -11.57630 -11.44413 -11.39205 -11.17678 -11.12230 -10.86862 -10.82218 -10.66143 -10.22699 -10.07506 -9.72826 -9.61070 -9.26983 -8.73262 -8.49216 -8.33483 -7.66127 -6.14449 -4.20838 3.25615 3.28788 3.30701 3.34822 3.80893 4.06502 4.35904 4.38267 5.05980 5.14738 5.15613 5.18591 5.20266 5.29871 5.38744 5.42618 5.47910 5.55347 5.65510 5.70512 5.73953 5.79687 5.83971 5.94705 5.96462 6.01259 6.03764 6.17078 6.19336 6.26989 6.33277 6.40577 6.49718 6.53419 6.57468 6.65913 6.84480 6.91368 7.05213 7.08306 7.24458 7.60044 7.80531 8.10813 8.39755 8.83883 9.10031 9.46291 10.92436 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.010327 B = 0.005954 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.566886 B = 4701.872318 C = 6850.846839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.548 5.548 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.128 4.128 6 C 0.123 3.877 7 N -0.591 5.591 8 C 0.239 3.761 9 C -0.531 4.531 10 H 0.059 0.941 11 C 0.065 3.935 12 N -0.893 5.893 13 Si 0.895 3.105 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.277 1.277 17 C 0.545 3.455 18 O -0.572 6.572 19 C -0.162 4.162 20 H 0.123 0.877 21 C -0.135 4.135 22 C -0.114 4.114 23 C -0.094 4.094 24 C -0.112 4.112 25 H 0.023 0.977 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.022 0.978 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.035 0.965 38 H 0.038 0.962 39 H 0.265 0.735 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.391 7.155 0.630 11.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.167 4.167 6 C -0.001 4.001 7 N -0.320 5.320 8 C 0.119 3.881 9 C -0.570 4.570 10 H 0.077 0.923 11 C -0.138 4.138 12 N -0.532 5.532 13 Si 0.723 3.277 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.202 1.202 17 C 0.334 3.666 18 O -0.454 6.454 19 C -0.183 4.183 20 H 0.141 0.859 21 C -0.173 4.173 22 C -0.115 4.115 23 C -0.151 4.151 24 C -0.169 4.169 25 H 0.042 0.958 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.473 7.205 0.343 11.128 hybrid contribution 0.825 -0.138 1.165 1.434 sum -7.648 7.067 1.507 10.522 Atomic orbital electron populations 1.22421 0.87521 1.02667 0.99964 1.61965 1.08016 1.13411 1.43777 1.22367 1.00811 0.89044 1.00107 1.22081 1.00077 0.93979 0.90767 1.21942 1.01532 0.93186 1.00045 1.21174 1.00163 0.81354 0.97406 1.48142 1.19911 1.09117 1.54816 1.19430 0.88107 0.88473 0.92060 1.21424 1.14943 1.25817 0.94776 0.92311 1.24914 0.97362 0.96285 0.95198 1.69911 1.35091 1.34522 1.13633 0.86605 0.80864 0.79175 0.81105 1.20110 1.21199 1.20230 1.19547 0.80825 0.88345 0.77855 1.90571 1.50944 1.59457 1.44399 1.22253 1.01704 0.93947 1.00367 0.85898 1.23024 0.99000 0.99585 0.95673 1.21600 0.88919 0.99103 1.01844 1.21257 0.97145 0.96529 1.00152 1.21343 0.99355 0.96731 0.99498 0.95812 0.91790 0.90855 0.91352 0.91637 0.95932 0.94883 0.90646 0.90929 0.91907 0.91327 0.90524 0.94740 0.94384 0.92548 0.88394 0.88969 0.91839 0.94252 0.91982 0.92402 0.92331 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.32 60.06 0.56 0.83 16 2 N -0.55 -7.26 5.02 -251.27 -1.26 -8.52 16 3 C 0.03 0.27 9.57 60.06 0.57 0.84 16 4 C 0.06 0.83 4.96 -3.83 -0.02 0.81 16 5 C -0.13 -2.10 5.46 -26.73 -0.15 -2.25 16 6 C 0.12 2.29 5.41 -4.04 -0.02 2.26 16 7 N -0.59 -12.52 2.46 -175.06 -0.43 -12.95 16 8 C 0.24 5.70 4.99 -5.19 -0.03 5.68 16 9 C -0.53 -13.81 9.39 -34.44 -0.32 -14.13 16 10 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 11 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -24.66 13.29 55.43 0.74 -23.93 16 13 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 C 0.55 11.46 7.44 -10.98 -0.08 11.38 16 18 O -0.57 -12.46 12.68 5.56 0.07 -12.39 16 19 C -0.16 -3.09 5.01 -91.77 -0.46 -3.55 16 20 H 0.12 2.42 6.44 -51.93 -0.33 2.09 16 21 C -0.14 -2.36 9.53 -26.69 -0.25 -2.61 16 22 C -0.11 -1.84 2.70 -154.47 -0.42 -2.26 16 23 C -0.09 -1.51 8.09 37.16 0.30 -1.20 16 24 C -0.11 -1.49 9.85 37.16 0.37 -1.12 16 25 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 27 H 0.07 0.96 6.47 -51.93 -0.34 0.62 16 28 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 29 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 30 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.03 0.46 8.12 -51.93 -0.42 0.03 16 32 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.09 6.55 -51.93 -0.34 0.75 16 35 H 0.07 1.28 7.42 -51.93 -0.39 0.90 16 36 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 37 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 38 H 0.04 0.94 6.00 -51.93 -0.31 0.63 16 39 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 40 H 0.10 1.60 8.05 -51.93 -0.42 1.18 16 41 H 0.09 1.65 8.05 -51.93 -0.42 1.23 16 42 H 0.06 1.09 7.26 -51.93 -0.38 0.72 16 43 H 0.04 0.53 7.92 -51.93 -0.41 0.12 16 44 H 0.06 1.09 7.02 -51.93 -0.36 0.72 16 45 H 0.06 0.74 7.90 -51.93 -0.41 0.33 16 46 H 0.06 0.68 7.93 -51.92 -0.41 0.26 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -28.28 373.86 -9.01 -37.30 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -8.70 Total: 2.96 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -0.04 Total: -3.70 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -0.95 Total: -45.40 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.07 Total: -12.39 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.28 -9.01 -37.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121021216.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.939 kcal (2) G-P(sol) polarization free energy of solvation -28.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds