Wall clock time and date at job start Tue Mar 31 2020 05:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47305 * 2 1 4 4 C 1.53007 * 109.49942 * 60.06081 * 3 2 1 5 5 C 1.53042 * 109.50217 * 180.15990 * 3 2 1 6 6 C 1.53033 * 109.54154 * 181.31875 * 5 3 2 7 7 C 1.53192 * 109.30876 * 298.63139 * 6 5 3 8 8 N 1.46924 * 108.77956 * 54.63828 * 7 6 5 9 9 C 1.34776 * 120.63538 * 126.40847 * 8 7 6 10 10 O 1.21585 * 120.00112 * 174.94389 * 9 8 7 11 11 N 1.34782 * 119.99536 * 354.93876 * 9 8 7 12 12 C 1.46503 * 119.99431 * 185.07070 * 11 9 8 13 13 C 1.52997 * 109.46694 * 180.02562 * 12 11 9 14 14 C 1.53007 * 109.47096 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46985 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00291 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99721 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00017 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00042 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.46996 * 90.00079 * 19 17 15 21 21 H 1.48505 * 109.47183 * 209.99953 * 19 17 15 22 22 H 1.48503 * 109.47196 * 330.00157 * 19 17 15 23 23 C 1.46926 * 118.73792 * 306.39435 * 8 7 6 24 24 H 1.09002 * 109.46851 * 60.00188 * 1 2 3 25 25 H 1.08996 * 109.47203 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47438 * 300.00376 * 1 2 3 27 27 H 1.08993 * 109.47444 * 239.99619 * 2 1 3 28 28 H 1.09002 * 109.46851 * 119.99812 * 2 1 3 29 29 H 1.08997 * 109.47117 * 60.00483 * 4 3 2 30 30 H 1.09000 * 109.47011 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.46799 * 300.00100 * 4 3 2 32 32 H 1.09005 * 109.45588 * 301.33657 * 5 3 2 33 33 H 1.08994 * 109.46049 * 61.29118 * 5 3 2 34 34 H 1.09002 * 109.49933 * 178.68516 * 6 5 3 35 35 H 1.08996 * 109.50217 * 58.58295 * 6 5 3 36 36 H 1.09000 * 109.59064 * 294.84716 * 7 6 5 37 37 H 1.09005 * 109.70410 * 174.49158 * 7 6 5 38 38 H 0.96992 * 119.99948 * 5.08016 * 11 9 8 39 39 H 1.09003 * 109.47450 * 300.00096 * 12 11 9 40 40 H 1.08992 * 109.47504 * 60.00256 * 12 11 9 41 41 H 1.09000 * 109.47413 * 299.99831 * 13 12 11 42 42 H 1.08999 * 109.48037 * 59.99948 * 13 12 11 43 43 H 1.08995 * 109.46964 * 299.99703 * 14 13 12 44 44 H 1.09002 * 109.46921 * 59.99891 * 14 13 12 45 45 H 0.96996 * 119.99885 * 180.02562 * 18 17 15 46 46 H 1.09006 * 109.58482 * 293.82178 * 23 8 7 47 47 H 1.08994 * 109.70996 * 173.46371 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5316 2.1639 1.2498 5 6 3.5704 1.4432 -0.0040 6 6 4.0817 2.8852 0.0292 7 6 3.5946 3.6243 -1.2212 8 7 2.1325 3.5042 -1.3021 9 6 1.3588 4.6013 -1.4215 10 8 0.1590 4.4848 -1.5799 11 7 1.9153 5.8276 -1.3653 12 6 1.0640 7.0197 -1.3834 13 6 1.9392 8.2725 -1.3105 14 6 1.0502 9.5176 -1.3300 15 6 1.9123 10.7515 -1.2577 16 1 2.9868 10.6572 -1.2036 17 6 1.3293 12.0010 -1.2615 18 7 2.0817 13.0779 -1.1989 19 14 -0.5292 12.1642 -1.3557 20 1 -1.0951 12.1775 0.0171 21 1 -0.8805 13.4301 -2.0482 22 1 -1.0894 11.0148 -2.1110 23 6 1.5297 2.1652 -1.2506 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.8959 1.6501 2.1394 30 1 1.8949 3.1916 1.2491 31 1 0.4416 2.1642 1.2510 32 1 3.9361 0.9081 0.8724 33 1 3.9314 0.9506 -0.9068 34 1 5.1715 2.8845 0.0498 35 1 3.7007 3.3860 0.9192 36 1 4.0473 3.1803 -2.1078 37 1 3.8717 4.6766 -1.1575 38 1 2.8793 5.9207 -1.3130 39 1 0.4819 7.0366 -2.3048 40 1 0.3892 6.9973 -0.5278 41 1 2.5216 8.2558 -0.3893 42 1 2.6138 8.2948 -2.1664 43 1 0.4683 9.5341 -2.2515 44 1 0.3753 9.4956 -0.4744 45 1 1.6715 13.9568 -1.2012 46 1 1.8141 1.6021 -2.1396 47 1 0.4442 2.2523 -1.2050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174724988.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:19 Heat of formation + Delta-G solvation = -53.829076 kcal Electronic energy + Delta-G solvation = -22946.526290 eV Core-core repulsion = 19742.357971 eV Total energy + Delta-G solvation = -3204.168319 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.74744 -38.63471 -35.49461 -35.18797 -33.22191 -32.49909 -31.35082 -29.88417 -27.67847 -27.03992 -25.34880 -24.45832 -22.70420 -21.74153 -20.58291 -19.80799 -18.58252 -18.11556 -16.74664 -16.20697 -15.77899 -15.39064 -15.08850 -14.69373 -14.46725 -14.10861 -14.00934 -13.87455 -13.57250 -13.36244 -13.14476 -12.68531 -12.55603 -12.35662 -11.97778 -11.94306 -11.82780 -11.58983 -11.44678 -11.23407 -11.02099 -10.88093 -10.82468 -10.58132 -10.48590 -10.17819 -9.97825 -9.79113 -9.64882 -9.21568 -8.94924 -8.54570 -8.46070 -6.05469 -4.04029 2.69294 3.31643 3.32474 3.39950 3.44862 3.94489 4.32600 4.42682 4.45618 4.48932 4.68766 4.83167 4.98255 5.03077 5.04778 5.22934 5.28835 5.30066 5.42272 5.46796 5.50942 5.55184 5.62506 5.63991 5.66857 5.71152 5.72022 5.76819 5.86966 5.90884 5.93888 6.06332 6.07431 6.23612 6.38922 6.47553 6.49206 6.73157 6.85378 7.00554 7.25031 7.38488 7.76832 8.06026 8.51201 8.72119 8.98390 9.56970 11.07800 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031670 B = 0.003026 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.900708 B = 9252.264559 C = 9723.387441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.109 4.109 3 C -0.077 4.077 4 C -0.140 4.140 5 C -0.107 4.107 6 C -0.138 4.138 7 C 0.111 3.889 8 N -0.630 5.630 9 C 0.705 3.295 10 O -0.593 6.593 11 N -0.743 5.743 12 C 0.132 3.868 13 C -0.112 4.112 14 C -0.011 4.011 15 C -0.521 4.521 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.904 5.904 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 C 0.139 3.861 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.394 0.606 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.019 0.981 44 H 0.014 0.986 45 H 0.263 0.737 46 H 0.060 0.940 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.463 -27.745 2.655 28.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.147 4.147 3 C -0.078 4.078 4 C -0.198 4.198 5 C -0.145 4.145 6 C -0.177 4.177 7 C -0.013 4.013 8 N -0.368 5.368 9 C 0.407 3.593 10 O -0.471 6.471 11 N -0.400 5.400 12 C 0.009 3.991 13 C -0.151 4.151 14 C -0.049 4.049 15 C -0.559 4.559 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.543 5.543 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.188 1.188 23 C 0.016 3.984 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.230 0.770 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.037 0.963 44 H 0.033 0.967 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.548 -27.585 2.542 27.819 hybrid contribution -0.315 0.340 0.019 0.465 sum 2.232 -27.245 2.561 27.456 Atomic orbital electron populations 1.21907 0.95667 1.01515 1.02567 1.21507 0.96196 0.95007 1.01986 1.20966 0.95408 0.95321 0.96120 1.21902 1.01320 1.00469 0.96063 1.21556 0.94413 0.96415 1.02072 1.21981 1.00726 0.96335 0.98619 1.21618 0.80484 1.00936 0.98249 1.47216 1.05903 1.05566 1.78141 1.15890 0.85030 0.80531 0.77881 1.90893 1.13208 1.85611 1.57389 1.45516 1.10403 1.04754 1.79286 1.21505 0.93272 0.82574 1.01767 1.21700 0.98630 0.93141 1.01579 1.19499 0.95708 0.92946 0.96712 1.21100 0.94918 0.89093 1.50824 0.91032 1.25028 0.98153 0.95834 0.94476 1.69913 1.35438 0.97909 1.51012 0.86775 0.86186 0.77683 0.78663 1.20249 1.21390 1.18841 1.21535 0.99751 0.80975 0.96119 0.92240 0.92895 0.92244 0.91924 0.91769 0.92922 0.92264 0.92307 0.91707 0.91821 0.90737 0.90893 0.91446 0.90314 0.77018 0.91947 0.92114 0.92238 0.92183 0.96267 0.96734 0.92712 0.92185 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.21 37.16 0.34 -0.83 16 2 C -0.11 -0.74 4.99 -26.73 -0.13 -0.87 16 3 C -0.08 -0.62 0.54 -154.38 -0.08 -0.70 16 4 C -0.14 -1.30 7.64 37.16 0.28 -1.02 16 5 C -0.11 -0.73 4.71 -26.69 -0.13 -0.85 16 6 C -0.14 -0.99 5.74 -26.61 -0.15 -1.14 16 7 C 0.11 0.94 6.43 -3.71 -0.02 0.92 16 8 N -0.63 -7.31 2.41 -178.49 -0.43 -7.74 16 9 C 0.71 10.95 8.30 -86.91 -0.72 10.23 16 10 O -0.59 -11.53 15.79 5.29 0.08 -11.45 16 11 N -0.74 -10.89 5.47 -65.23 -0.36 -11.25 16 12 C 0.13 2.28 5.68 -4.04 -0.02 2.26 16 13 C -0.11 -2.13 5.27 -26.73 -0.14 -2.27 16 14 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 15 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 16 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 17 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 18 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 19 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 22 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 23 C 0.14 1.44 4.57 -3.71 -0.02 1.42 16 24 H 0.06 0.48 6.56 -51.93 -0.34 0.14 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.64 5.97 -51.93 -0.31 0.33 16 31 H 0.06 0.60 6.43 -51.93 -0.33 0.26 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.60 6.34 -51.93 -0.33 0.27 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.64 5.56 -51.93 -0.29 0.35 16 38 H 0.39 4.76 5.93 -40.82 -0.24 4.51 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 44 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.10 1.19 5.65 -51.93 -0.29 0.89 16 LS Contribution 353.89 15.07 5.33 5.33 Total: -1.00 -32.87 353.89 -8.93 -41.80 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -8.32 Total: -0.34 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -1.34 Total: -6.48 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.01 Total: -46.08 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.08 Total: -11.45 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.87 -8.93 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174724988.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.030 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds