Wall clock time and date at job start Tue Mar 31 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47104 * 2 1 4 4 C 1.53003 * 109.46923 * 65.00023 * 3 2 1 5 5 C 1.53006 * 109.46906 * 184.98768 * 4 3 2 6 6 C 1.50701 * 109.47126 * 185.00135 * 3 2 1 7 7 O 1.21284 * 119.99972 * 275.18881 * 6 3 2 8 8 N 1.34770 * 120.00358 * 95.19031 * 6 3 2 9 9 C 1.46502 * 120.00333 * 184.86386 * 8 6 3 10 10 C 1.52996 * 109.47032 * 180.02562 * 9 8 6 11 11 C 1.53352 * 109.41887 * 295.12083 * 10 9 8 12 12 C 1.53188 * 109.15071 * 178.67509 * 11 10 9 13 13 N 1.46924 * 108.89109 * 54.58196 * 12 11 10 14 14 C 1.36940 * 120.63375 * 126.29797 * 13 12 11 15 15 H 1.08003 * 119.99297 * 326.88845 * 14 13 12 16 16 C 1.38808 * 120.00655 * 146.88276 * 14 13 12 17 17 N 1.31621 * 120.00178 * 167.88130 * 16 14 13 18 18 Si 1.86804 * 119.99619 * 347.89017 * 16 14 13 19 19 H 1.48501 * 109.47315 * 85.68638 * 18 16 14 20 20 H 1.48503 * 109.46929 * 205.68558 * 18 16 14 21 21 H 1.48498 * 109.46968 * 325.68320 * 18 16 14 22 22 C 1.46927 * 118.74107 * 306.31873 * 13 12 11 23 23 C 1.53039 * 109.45751 * 174.99895 * 10 9 8 24 24 H 1.08997 * 109.47190 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47277 * 299.99766 * 1 2 3 26 26 H 1.09002 * 109.47166 * 60.00279 * 1 2 3 27 27 H 1.09001 * 109.47516 * 239.99756 * 2 1 3 28 28 H 1.09002 * 109.47166 * 119.99721 * 2 1 3 29 29 H 1.09001 * 109.46825 * 304.99827 * 3 2 1 30 30 H 1.09002 * 109.47035 * 304.98091 * 4 3 2 31 31 H 1.08997 * 109.47269 * 64.98535 * 4 3 2 32 32 H 1.09008 * 109.46719 * 304.42900 * 5 4 3 33 33 H 1.08998 * 109.47426 * 64.42879 * 5 4 3 34 34 H 1.08992 * 109.46853 * 184.43476 * 5 4 3 35 35 H 0.97000 * 119.99595 * 4.85699 * 8 6 3 36 36 H 1.08991 * 109.46948 * 59.99508 * 9 8 6 37 37 H 1.09005 * 109.46769 * 299.99773 * 9 8 6 38 38 H 1.08997 * 109.46327 * 55.02812 * 10 9 8 39 39 H 1.09003 * 109.67820 * 58.71464 * 11 10 9 40 40 H 1.09003 * 109.47759 * 298.52254 * 11 10 9 41 41 H 1.08997 * 109.58737 * 294.72390 * 12 11 10 42 42 H 1.09000 * 109.58845 * 174.43712 * 12 11 10 43 43 H 0.97001 * 119.99898 * 180.02562 * 17 16 14 44 44 H 1.09004 * 109.58959 * 173.39456 * 22 13 12 45 45 H 1.08999 * 109.58681 * 293.68026 * 22 13 12 46 46 H 1.08999 * 109.49994 * 61.43161 * 23 10 9 47 47 H 1.08997 * 109.52576 * 301.34749 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 1.3074 5 6 2.0356 3.6024 1.2560 6 6 3.5419 1.4444 -0.1239 7 8 4.2321 1.3197 0.8656 8 7 4.1181 1.5845 -1.3341 9 6 5.5731 1.4797 -1.4692 10 6 5.9646 1.6766 -2.9351 11 6 5.3922 0.5279 -3.7744 12 6 5.7595 0.7486 -5.2451 13 7 7.2160 0.9091 -5.3528 14 6 7.9425 0.1278 -6.2112 15 1 7.6379 -0.8904 -6.4036 16 6 9.0703 0.6443 -6.8343 17 7 9.9001 -0.1594 -7.4649 18 14 9.4102 2.4803 -6.7774 19 1 10.1420 2.8098 -5.5279 20 1 10.2343 2.8677 -7.9504 21 1 8.1247 3.2229 -6.8087 22 6 7.8783 1.9234 -4.5214 23 6 7.4900 1.6916 -3.0578 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6053 1.9815 -0.8418 30 1 0.5561 2.0473 1.4400 31 1 2.1405 1.6418 2.1427 32 1 3.1020 3.6824 1.0449 33 1 1.4711 4.1050 0.4706 34 1 1.8191 4.0711 2.2159 35 1 3.5694 1.7546 -2.1157 36 1 5.8990 0.4949 -1.1348 37 1 6.0507 2.2469 -0.8597 38 1 5.5621 2.6237 -3.2944 39 1 4.3074 0.5024 -3.6703 40 1 5.8133 -0.4174 -3.4320 41 1 5.2647 1.6467 -5.6146 42 1 5.4422 -0.1119 -5.8342 43 1 10.6884 0.2016 -7.9000 44 1 8.9594 1.8366 -4.6308 45 1 7.5582 2.9175 -4.8335 46 1 7.8914 0.7355 -2.7219 47 1 7.8971 2.4935 -2.4420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330898761.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:19 Heat of formation + Delta-G solvation = -48.116136 kcal Electronic energy + Delta-G solvation = -22995.046252 eV Core-core repulsion = 19791.125664 eV Total energy + Delta-G solvation = -3203.920587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.18108 -38.22040 -36.11641 -35.04415 -32.85649 -32.00156 -31.10613 -30.38418 -28.12018 -26.51658 -23.91152 -23.11564 -22.85382 -21.75214 -21.16943 -19.98058 -19.31474 -17.46872 -16.74755 -16.03228 -15.50723 -15.24203 -14.84918 -14.48980 -14.45055 -14.16463 -13.96977 -13.70073 -13.25214 -13.23409 -12.85590 -12.74912 -12.46498 -12.30148 -12.18686 -12.02101 -11.79658 -11.77882 -11.36927 -11.18050 -10.99898 -10.88613 -10.77837 -10.65740 -10.51125 -10.11652 -9.89991 -9.81693 -9.58711 -9.45444 -9.04135 -8.62928 -6.90126 -5.94602 -3.39233 2.59420 3.16353 3.29442 3.45190 3.48273 4.36686 4.50754 4.52675 4.61437 4.92461 4.94263 4.97491 5.02678 5.08224 5.11480 5.19132 5.22767 5.29717 5.41169 5.44149 5.53010 5.64679 5.68298 5.75866 5.79178 5.79805 5.87702 5.92370 5.93848 6.01345 6.04396 6.05521 6.16514 6.27675 6.38328 6.44441 6.49004 6.63324 6.63663 6.69199 6.94935 7.47797 8.01903 8.19838 8.34657 8.94136 9.70629 10.10688 11.21618 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032098 B = 0.003356 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.124913 B = 8340.351990 C = 8763.447271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.107 4.107 4 C -0.110 4.110 5 C -0.155 4.155 6 C 0.516 3.484 7 O -0.543 6.543 8 N -0.726 5.726 9 C 0.123 3.877 10 C -0.091 4.091 11 C -0.129 4.129 12 C 0.149 3.851 13 N -0.608 5.608 14 C -0.261 4.261 15 H 0.083 0.917 16 C 0.023 3.977 17 N -0.915 5.915 18 Si 0.895 3.105 19 H -0.286 1.286 20 H -0.305 1.305 21 H -0.272 1.272 22 C 0.121 3.879 23 C -0.125 4.125 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.400 0.600 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.021 0.979 42 H 0.062 0.938 43 H 0.263 0.737 44 H 0.074 0.926 45 H 0.025 0.975 46 H 0.067 0.933 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.488 5.124 14.680 24.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.128 4.128 4 C -0.148 4.148 5 C -0.212 4.212 6 C 0.302 3.698 7 O -0.420 6.420 8 N -0.378 5.378 9 C 0.000 4.000 10 C -0.110 4.110 11 C -0.168 4.168 12 C 0.023 3.977 13 N -0.332 5.332 14 C -0.389 4.389 15 H 0.101 0.899 16 C -0.175 4.175 17 N -0.558 5.558 18 Si 0.727 3.273 19 H -0.214 1.214 20 H -0.233 1.233 21 H -0.197 1.197 22 C -0.004 4.004 23 C -0.165 4.165 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.234 0.766 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.039 0.961 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.092 0.908 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.816 4.985 15.257 23.980 hybrid contribution 0.150 1.102 -0.471 1.208 sum -17.666 6.087 14.786 23.827 Atomic orbital electron populations 1.21821 0.94962 1.02013 1.02095 1.21438 0.96415 0.94160 1.03096 1.21423 0.92106 0.98611 1.00666 1.21486 1.01191 0.95700 0.96417 1.21808 1.01812 0.95940 1.01659 1.20626 0.90430 0.75721 0.83016 1.90684 1.65064 1.49374 1.36915 1.46168 1.08785 1.73130 1.09691 1.21522 0.79380 1.01914 0.97220 1.21354 0.97419 0.99518 0.92718 1.22134 0.98484 0.98149 0.98037 1.20917 0.84979 0.98900 0.92942 1.44319 1.01643 1.42089 1.45123 1.18916 1.07436 0.94297 1.18299 0.89912 1.25424 0.97686 0.97558 0.96873 1.69764 1.13392 1.34374 1.38259 0.86832 0.77696 0.87107 0.75691 1.21387 1.23312 1.19715 1.21433 0.98027 0.91967 0.89000 1.21981 0.93636 1.01803 0.99105 0.92371 0.92261 0.92498 0.91381 0.91120 0.89474 0.90987 0.90663 0.92563 0.92888 0.92515 0.76574 0.91564 0.91811 0.91222 0.92978 0.91753 0.96143 0.91907 0.92711 0.90772 0.95743 0.91417 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.67 37.15 0.36 -0.57 16 2 C -0.11 -0.91 5.38 -26.73 -0.14 -1.05 16 3 C -0.11 -0.93 2.20 -91.77 -0.20 -1.13 16 4 C -0.11 -0.94 5.03 -26.73 -0.13 -1.07 16 5 C -0.15 -1.34 9.80 37.16 0.36 -0.97 16 6 C 0.52 6.26 5.79 -10.99 -0.06 6.20 16 7 O -0.54 -8.73 16.02 5.55 0.09 -8.64 16 8 N -0.73 -8.17 5.27 -60.30 -0.32 -8.48 16 9 C 0.12 1.62 5.07 -4.04 -0.02 1.60 16 10 C -0.09 -1.31 2.19 -90.42 -0.20 -1.50 16 11 C -0.13 -1.94 5.27 -26.45 -0.14 -2.08 16 12 C 0.15 2.80 6.50 -3.71 -0.02 2.78 16 13 N -0.61 -14.19 2.73 -172.32 -0.47 -14.66 16 14 C -0.26 -7.27 10.05 -15.06 -0.15 -7.42 16 15 H 0.08 2.48 8.06 -52.48 -0.42 2.05 16 16 C 0.02 0.68 5.34 -17.43 -0.09 0.59 16 17 N -0.91 -28.15 13.97 55.49 0.78 -27.38 16 18 Si 0.90 22.52 24.25 -169.99 -4.12 18.40 16 19 H -0.29 -6.89 6.42 56.52 0.36 -6.53 16 20 H -0.30 -7.81 7.11 56.52 0.40 -7.40 16 21 H -0.27 -6.70 6.62 56.52 0.37 -6.32 16 22 C 0.12 2.58 4.16 -3.71 -0.02 2.57 16 23 C -0.13 -2.13 5.36 -26.61 -0.14 -2.28 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.34 6.46 -51.93 -0.34 0.00 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 0.61 8.09 -51.93 -0.42 0.19 16 30 H 0.07 0.48 6.35 -51.93 -0.33 0.15 16 31 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 32 H 0.06 0.60 7.12 -51.92 -0.37 0.23 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.40 3.62 7.61 -40.82 -0.31 3.31 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.05 0.63 7.16 -51.93 -0.37 0.26 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 43 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 44 H 0.07 1.75 4.51 -51.93 -0.23 1.51 16 45 H 0.02 0.52 6.91 -51.93 -0.36 0.16 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 356.25 15.07 5.37 5.37 Total: -1.00 -32.22 356.25 -7.94 -40.16 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -8.66 Total: -0.42 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -0.60 Total: -4.35 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.01 Total: -50.52 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.12 Total: 18.40 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.22 -7.94 -40.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330898761.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.953 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds