Wall clock time and date at job start Tue Mar 31 2020 05:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46900 * 2 1 4 4 C 1.52997 * 109.47204 * 119.99783 * 2 1 3 5 5 C 1.53002 * 109.46974 * 174.99599 * 4 2 1 6 6 C 1.52998 * 109.46640 * 180.02562 * 5 4 2 7 7 C 1.53047 * 109.45628 * 185.00385 * 6 5 4 8 8 C 1.53194 * 109.31080 * 178.63144 * 7 6 5 9 9 N 1.46919 * 108.77751 * 54.63205 * 8 7 6 10 10 C 1.37349 * 120.62932 * 126.37085 * 9 8 7 11 11 O 1.35089 * 120.00075 * 173.81883 * 10 9 8 12 12 N 1.30094 * 120.00038 * 353.81251 * 10 9 8 13 13 C 1.46495 * 120.00289 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47093 * 115.00081 * 13 12 10 15 15 H 1.08005 * 119.99953 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99909 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00356 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00069 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46988 * 60.00077 * 18 16 14 20 20 H 1.48499 * 109.47492 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47033 * 300.00330 * 18 16 14 22 22 C 1.46924 * 118.74265 * 306.64363 * 9 8 7 23 23 C 1.52766 * 109.00456 * 53.30579 * 22 9 8 24 24 H 1.09004 * 109.46857 * 300.00264 * 1 2 3 25 25 H 1.09005 * 109.47070 * 59.99645 * 1 2 3 26 26 H 1.08993 * 109.47258 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46678 * 240.00138 * 2 1 3 28 28 H 1.09004 * 109.47192 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47299 * 299.99677 * 3 2 1 30 30 H 1.08998 * 109.47342 * 60.00545 * 3 2 1 31 31 H 1.09004 * 109.46676 * 54.99975 * 4 2 1 32 32 H 1.09002 * 109.47315 * 295.00294 * 4 2 1 33 33 H 1.08996 * 109.46816 * 60.00709 * 5 4 2 34 34 H 1.08987 * 109.47236 * 300.00289 * 5 4 2 35 35 H 1.09001 * 109.46683 * 304.97190 * 6 5 4 36 36 H 1.08997 * 109.49549 * 58.67773 * 7 6 5 37 37 H 1.08999 * 109.52355 * 298.59648 * 7 6 5 38 38 H 1.09008 * 109.58584 * 294.84053 * 8 7 6 39 39 H 1.08998 * 109.70481 * 174.49610 * 8 7 6 40 40 H 0.96708 * 114.00127 * 354.60344 * 11 10 9 41 41 H 1.09000 * 109.47655 * 235.00190 * 13 12 10 42 42 H 1.09000 * 109.46814 * 355.00206 * 13 12 10 43 43 H 0.97000 * 120.00705 * 179.97438 * 17 16 14 44 44 H 1.08997 * 109.59142 * 173.14493 * 22 9 8 45 45 H 1.09001 * 109.58628 * 293.57391 * 22 9 8 46 46 H 1.08999 * 109.56078 * 185.55244 * 23 22 9 47 47 H 1.08999 * 109.35908 * 65.50837 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1879 6 6 4.0748 -1.5528 2.4368 7 6 5.6052 -1.5527 2.4366 8 6 6.1121 -2.2459 3.7052 9 7 5.5088 -3.5830 3.7867 10 6 6.2965 -4.6982 3.9358 11 8 5.7260 -5.9065 4.1346 12 7 7.5920 -4.5910 3.8856 13 6 8.4322 -5.7805 4.0441 14 6 9.1787 -6.0429 2.7615 15 1 9.0412 -5.3886 1.9132 16 6 10.0370 -7.1181 2.6709 17 7 10.2040 -7.9150 3.7037 18 14 10.9628 -7.4429 1.0813 19 1 11.8183 -6.2727 0.7588 20 1 11.8144 -8.6488 1.2419 21 1 9.9920 -7.6649 -0.0204 22 6 4.0472 -3.7052 3.6995 23 6 3.5631 -2.9951 2.4365 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6054 -1.7198 1.2951 32 1 1.7517 -0.1583 2.1370 33 1 3.9995 0.1675 1.1420 34 1 3.8531 -1.3939 0.3002 35 1 3.7118 -1.0389 3.3270 36 1 5.9689 -0.5254 2.4132 37 1 5.9694 -2.0876 1.5595 38 1 5.8258 -1.6619 4.5800 39 1 7.1976 -2.3365 3.6658 40 1 4.7651 -5.8754 4.2390 41 1 9.1451 -5.6169 4.8523 42 1 7.8047 -6.6395 4.2815 43 1 10.8075 -8.6717 3.6399 44 1 3.7706 -4.7585 3.6537 45 1 3.5891 -3.2426 4.5737 46 1 2.4734 -2.9945 2.4131 47 1 3.9460 -3.5168 1.5594 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331137162.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:31 Heat of formation + Delta-G solvation = -47.176600 kcal Electronic energy + Delta-G solvation = -22569.822419 eV Core-core repulsion = 19365.942573 eV Total energy + Delta-G solvation = -3203.879846 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.65186 -38.00213 -36.54237 -33.95010 -33.45781 -31.91735 -30.91540 -29.51113 -27.48045 -26.82954 -25.12932 -23.37954 -22.63205 -21.58349 -20.20641 -20.10785 -19.39736 -18.06602 -16.10413 -15.70824 -15.42883 -14.93014 -14.72411 -14.65982 -14.33996 -14.08622 -13.75387 -13.58972 -13.38612 -13.04914 -12.79574 -12.68054 -12.52075 -12.13008 -12.00556 -11.91991 -11.62763 -11.53733 -11.21591 -11.14904 -11.03905 -10.82948 -10.82260 -10.67245 -10.62064 -10.32841 -10.12098 -9.92634 -9.64207 -9.01558 -8.49470 -7.95153 -7.02443 -5.85794 -3.88136 3.24101 3.41558 3.43867 3.47558 3.71409 4.40730 4.49540 4.55911 4.57740 4.62693 4.72609 4.84586 4.88643 5.09655 5.13951 5.29269 5.30738 5.38751 5.40969 5.45100 5.47415 5.51641 5.56868 5.57593 5.60910 5.68484 5.76896 5.82364 5.91083 5.91432 5.96644 6.00754 6.08906 6.16311 6.19733 6.27358 6.39493 6.49104 7.04606 7.46727 7.71654 7.77432 8.09245 8.50929 8.66996 9.12692 9.42451 9.77089 11.22943 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023454 B = 0.003099 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.526356 B = 9034.166361 C = 9551.059523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.149 4.149 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.084 4.084 7 C -0.131 4.131 8 C 0.141 3.859 9 N -0.630 5.630 10 C 0.518 3.482 11 O -0.504 6.504 12 N -0.574 5.574 13 C 0.201 3.799 14 C -0.500 4.500 15 H 0.056 0.944 16 C 0.053 3.947 17 N -0.900 5.900 18 Si 0.898 3.102 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.279 1.279 22 C 0.121 3.879 23 C -0.130 4.130 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.103 0.897 40 H 0.373 0.627 41 H 0.029 0.971 42 H 0.010 0.990 43 H 0.260 0.740 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.221 16.774 -3.766 27.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.206 4.206 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.102 4.102 7 C -0.170 4.170 8 C 0.018 3.982 9 N -0.364 5.364 10 C 0.205 3.795 11 O -0.297 6.297 12 N -0.319 5.319 13 C 0.074 3.926 14 C -0.539 4.539 15 H 0.075 0.925 16 C -0.148 4.148 17 N -0.540 5.540 18 Si 0.726 3.274 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.204 1.204 22 C -0.003 4.003 23 C -0.168 4.168 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.122 0.878 40 H 0.226 0.774 41 H 0.047 0.953 42 H 0.028 0.972 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.940 16.824 -3.813 26.366 hybrid contribution -0.483 -0.954 -0.734 1.297 sum -20.423 15.870 -4.547 26.261 Atomic orbital electron populations 1.21847 0.95512 1.01604 1.01536 1.21141 0.95446 0.96441 0.98745 1.21893 1.01347 0.95975 1.01411 1.21706 0.95790 1.00360 0.97405 1.21695 0.95115 1.00491 0.98013 1.21121 0.95672 0.95293 0.98155 1.22018 0.94770 1.00605 0.99573 1.21332 1.00480 0.80787 0.95596 1.46286 1.03687 1.04641 1.81765 1.20746 0.88610 0.77108 0.93071 1.85426 1.25649 1.29168 1.89443 1.72461 0.97358 1.33759 1.28316 1.19319 0.90938 0.85408 0.96947 1.21167 1.24026 1.10421 0.98255 0.92533 1.24990 0.97066 0.96067 0.96633 1.69961 1.37759 1.16472 1.29849 0.86565 0.79687 0.77469 0.83678 1.20232 1.21329 1.20428 1.21308 0.80944 1.00200 0.97890 1.21955 1.00320 0.96101 0.98471 0.92820 0.92944 0.92777 0.91352 0.92316 0.93096 0.92836 0.91807 0.92134 0.91761 0.92025 0.91337 0.91276 0.91349 0.93171 0.87840 0.77396 0.95279 0.97155 0.93023 0.91174 0.92011 0.90974 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.19 37.16 0.34 -0.57 16 2 C -0.10 -0.68 2.92 -90.62 -0.26 -0.94 16 3 C -0.15 -0.98 8.95 37.16 0.33 -0.64 16 4 C -0.12 -0.81 4.44 -26.73 -0.12 -0.93 16 5 C -0.12 -0.94 4.44 -26.73 -0.12 -1.06 16 6 C -0.08 -0.77 2.15 -90.58 -0.19 -0.96 16 7 C -0.13 -1.51 5.36 -26.61 -0.14 -1.65 16 8 C 0.14 1.99 6.46 -3.71 -0.02 1.96 16 9 N -0.63 -9.69 3.05 -175.63 -0.54 -10.22 16 10 C 0.52 10.77 8.53 -88.56 -0.76 10.02 16 11 O -0.50 -10.06 11.97 -16.97 -0.20 -10.26 16 12 N -0.57 -14.56 9.11 -63.71 -0.58 -15.14 16 13 C 0.20 5.98 6.09 -5.19 -0.03 5.95 16 14 C -0.50 -15.61 9.39 -34.44 -0.32 -15.94 16 15 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 16 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -28.57 13.29 55.43 0.74 -27.83 16 18 Si 0.90 23.05 29.54 -169.99 -5.02 18.03 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 22 C 0.12 1.29 6.28 -3.93 -0.02 1.27 16 23 C -0.13 -1.23 5.13 -26.83 -0.14 -1.37 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.40 6.57 -51.93 -0.34 0.05 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.45 6.53 -51.93 -0.34 0.11 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 34 H 0.06 0.56 8.14 -51.94 -0.42 0.13 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.10 1.79 6.91 -51.93 -0.36 1.43 16 40 H 0.37 5.02 6.27 45.56 0.29 5.31 16 41 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.01 0.33 6.74 -51.93 -0.35 -0.02 16 43 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 44 H 0.07 0.66 5.77 -51.93 -0.30 0.36 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.54 6.50 -51.93 -0.34 0.21 16 47 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 363.16 15.07 5.47 5.47 Total: -1.00 -35.41 363.16 -9.66 -45.07 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -7.97 Total: -1.77 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -1.56 Total: -3.34 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.38 Total: -53.20 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.20 Total: -10.26 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.41 -9.66 -45.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331137162.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.110 kcal (2) G-P(sol) polarization free energy of solvation -35.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds