Wall clock time and date at job start Tue Mar 31 2020 05:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.63086 * 2 1 4 4 N 1.46493 * 109.46981 * 300.00295 * 3 2 1 5 5 C 1.34782 * 119.99774 * 179.97438 * 4 3 2 6 6 O 1.21587 * 120.00074 * 0.02562 * 5 4 3 7 7 N 1.34782 * 120.00021 * 179.97438 * 5 4 3 8 8 C 1.46494 * 119.99833 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.46784 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.47105 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99954 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00105 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00039 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99971 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47000 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46893 * 120.00610 * 14 12 10 17 17 H 1.48499 * 109.46993 * 239.99996 * 14 12 10 18 18 C 1.50475 * 109.62886 * 239.61337 * 2 1 3 19 19 C 1.54262 * 112.38890 * 334.12912 * 18 2 1 20 20 C 1.54064 * 112.95041 * 318.57798 * 19 18 2 21 21 C 1.50480 * 112.49554 * 318.16991 * 20 19 18 22 22 C 1.54241 * 108.52524 * 94.14840 * 21 20 19 23 23 C 1.45545 * 112.40643 * 280.01904 * 22 21 20 24 24 H 1.08998 * 109.46873 * 98.81402 * 1 2 3 25 25 H 1.09002 * 109.46791 * 338.80959 * 1 2 3 26 26 H 1.09000 * 109.47078 * 218.81503 * 1 2 3 27 27 H 1.09001 * 109.46901 * 59.99976 * 3 2 1 28 28 H 1.08997 * 109.47514 * 179.97438 * 3 2 1 29 29 H 0.97003 * 120.00375 * 359.97438 * 4 3 2 30 30 H 0.96999 * 119.99597 * 0.02562 * 7 5 4 31 31 H 1.08997 * 109.47746 * 300.00071 * 8 7 5 32 32 H 1.08998 * 109.47381 * 60.00703 * 8 7 5 33 33 H 1.09007 * 109.46983 * 299.99607 * 9 8 7 34 34 H 1.09001 * 109.47442 * 60.00126 * 9 8 7 35 35 H 0.97001 * 120.00201 * 179.97438 * 13 12 10 36 36 H 1.08996 * 108.87799 * 95.22269 * 18 2 1 37 37 H 1.09000 * 108.87875 * 213.66179 * 18 2 1 38 38 H 1.08998 * 108.83771 * 197.61182 * 19 18 2 39 39 H 1.09007 * 108.56540 * 79.35319 * 19 18 2 40 40 H 1.08996 * 108.88120 * 197.39369 * 20 19 18 41 41 H 1.09004 * 108.87609 * 78.94397 * 20 19 18 42 42 H 1.08999 * 109.62345 * 334.43836 * 21 20 19 43 43 H 1.08998 * 109.62964 * 213.85935 * 21 20 19 44 44 H 1.08996 * 108.89860 * 159.26106 * 22 21 20 45 45 H 1.09000 * 108.89276 * 40.76352 * 22 21 20 46 46 H 1.09001 * 108.88858 * 301.18335 * 23 22 21 47 47 H 1.08997 * 108.89347 * 182.68747 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 7 1.5575 2.1330 -1.1961 5 6 1.8863 3.4226 -1.4091 6 8 2.5870 4.0116 -0.6088 7 7 1.4392 4.0591 -2.5098 8 6 1.7961 5.4610 -2.7410 9 6 1.1643 5.9388 -4.0500 10 6 1.5320 7.3808 -4.2883 11 1 2.1544 7.9039 -3.5773 12 6 1.0747 8.0318 -5.4143 13 7 0.3173 7.3947 -6.2802 14 14 1.5298 9.8194 -5.7092 15 1 2.3841 10.3030 -4.5949 16 1 2.2736 9.9361 -6.9892 17 1 0.2940 10.6399 -5.7782 18 6 2.0355 -0.7169 -1.2226 19 6 1.0240 -1.7518 -1.7571 20 6 0.3421 -2.5596 -0.6364 21 6 1.3050 -2.9714 0.4442 22 6 1.2597 -1.9169 1.5689 23 6 2.0481 -0.7349 1.2532 24 1 -0.3633 -0.1575 -1.0155 25 1 -0.3633 0.9582 0.3715 26 1 -0.3633 -0.8007 0.6441 27 1 1.6821 1.9559 0.8900 28 1 3.1340 1.4381 0.0005 29 1 0.9988 1.6631 -1.8348 30 1 0.8805 3.5891 -3.1484 31 1 1.4273 6.0707 -1.9162 32 1 2.8802 5.5541 -2.8052 33 1 1.5329 5.3292 -4.8751 34 1 0.0802 5.8458 -3.9855 35 1 -0.0048 7.8528 -7.0722 36 1 2.2423 0.0170 -2.0015 37 1 2.9625 -1.2322 -0.9712 38 1 1.5443 -2.4420 -2.4212 39 1 0.2582 -1.2261 -2.3275 40 1 -0.1061 -3.4541 -1.0689 41 1 -0.4464 -1.9514 -0.1930 42 1 2.3135 -3.0266 0.0343 43 1 1.0148 -3.9438 0.8421 44 1 1.6437 -2.3626 2.4864 45 1 0.2242 -1.6175 1.7305 46 1 3.0822 -1.0353 1.0839 47 1 2.0153 -0.0517 2.1018 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343914917.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:23 Heat of formation + Delta-G solvation = -43.453773 kcal Electronic energy + Delta-G solvation = -22747.467228 eV Core-core repulsion = 19543.748816 eV Total energy + Delta-G solvation = -3203.718412 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.82282 -39.21848 -35.43166 -34.55805 -32.95590 -32.82549 -32.17589 -29.48283 -28.39041 -26.64564 -24.84068 -24.55435 -22.85549 -20.97851 -20.48413 -20.07096 -18.66311 -17.86272 -16.38397 -16.15744 -15.91339 -15.59784 -15.19107 -15.05092 -14.48883 -14.35635 -13.87471 -13.65354 -13.52789 -13.24421 -12.96262 -12.75927 -12.57949 -12.26436 -12.04897 -11.78726 -11.52232 -11.14970 -11.04456 -11.02646 -10.87456 -10.64036 -10.59847 -10.57921 -10.42003 -10.28699 -9.95246 -9.87458 -9.52294 -9.21691 -8.91726 -8.45868 -8.18454 -6.07313 -4.09629 3.13455 3.29972 3.37580 3.43377 3.67355 4.26719 4.31066 4.42630 4.46759 4.63862 4.76862 4.83058 4.90900 4.98260 5.04144 5.06029 5.25207 5.29936 5.42063 5.46113 5.58564 5.63407 5.71497 5.73657 5.78961 5.83227 5.88843 5.91385 5.93979 6.03700 6.06027 6.12004 6.16575 6.34932 6.36234 6.44091 6.71094 6.82139 7.06199 7.31333 7.60624 7.66507 7.92450 8.29202 8.50489 8.95998 9.07412 9.55090 11.04467 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039430 B = 0.002675 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.948875 B =10463.870985 C =10905.469467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.065 4.065 3 C 0.152 3.848 4 N -0.750 5.750 5 C 0.697 3.303 6 O -0.600 6.600 7 N -0.740 5.740 8 C 0.141 3.859 9 C 0.013 3.987 10 C -0.519 4.519 11 H 0.060 0.940 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.896 3.104 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.283 1.283 18 C -0.115 4.115 19 C -0.114 4.114 20 C -0.141 4.141 21 C -0.116 4.116 22 C -0.123 4.123 23 C -0.105 4.105 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.393 0.607 30 H 0.392 0.608 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.261 0.739 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.721 -23.228 12.369 26.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.065 4.065 3 C 0.028 3.972 4 N -0.408 5.408 5 C 0.397 3.603 6 O -0.479 6.479 7 N -0.393 5.393 8 C 0.018 3.982 9 C -0.025 4.025 10 C -0.558 4.558 11 H 0.078 0.922 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.724 3.276 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.178 4.178 21 C -0.153 4.153 22 C -0.160 4.160 23 C -0.143 4.143 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.227 0.773 30 H 0.225 0.775 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.142 -22.611 12.945 26.054 hybrid contribution -0.285 0.518 -0.960 1.127 sum -0.427 -22.093 11.986 25.138 Atomic orbital electron populations 1.22694 0.94360 1.02427 1.02954 1.20483 0.96330 0.93784 0.95934 1.21190 0.98706 0.90006 0.87342 1.45142 1.57467 1.11382 1.26766 1.16084 0.80618 0.81062 0.82550 1.90883 1.43042 1.66627 1.47337 1.45525 1.55476 1.14863 1.23462 1.21567 0.99507 0.77176 0.99982 1.19330 0.96281 0.96591 0.90282 1.21101 1.31707 0.96070 1.06894 0.92171 1.24998 0.94985 0.98449 0.95927 1.69965 1.34858 1.36776 1.11810 0.86460 0.78276 0.84666 0.78190 1.19566 1.20961 1.20953 1.21539 0.98788 0.97726 0.97175 1.21923 0.98348 0.97226 0.97603 1.21844 0.99528 0.99930 0.96522 1.21314 1.00256 0.97867 0.95884 1.20582 1.01235 0.95821 0.98406 1.20453 0.99860 0.96859 0.97144 0.91714 0.92818 0.90055 0.91880 0.92029 0.77283 0.77501 0.92862 0.92854 0.96003 0.95993 0.92943 0.91509 0.91993 0.92514 0.92082 0.92942 0.89825 0.91776 0.92336 0.92321 0.91234 0.91871 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 6.61 37.16 0.25 -1.04 16 2 C -0.06 -0.53 0.53 -155.12 -0.08 -0.61 16 3 C 0.15 1.75 4.18 -4.05 -0.02 1.73 16 4 N -0.75 -9.74 4.66 -65.23 -0.30 -10.04 16 5 C 0.70 12.57 8.57 -86.91 -0.74 11.83 16 6 O -0.60 -13.33 16.34 5.29 0.09 -13.25 16 7 N -0.74 -13.46 5.56 -65.23 -0.36 -13.82 16 8 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 11 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 14 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 15 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 C -0.11 -0.91 4.51 -27.33 -0.12 -1.04 16 19 C -0.11 -0.79 5.11 -25.52 -0.13 -0.93 16 20 C -0.14 -0.90 5.24 -27.43 -0.14 -1.04 16 21 C -0.12 -0.72 5.61 -27.34 -0.15 -0.87 16 22 C -0.12 -0.77 5.18 -29.60 -0.15 -0.92 16 23 C -0.11 -0.76 4.46 -29.60 -0.13 -0.90 16 24 H 0.06 0.47 5.55 -51.93 -0.29 0.18 16 25 H 0.05 0.48 7.72 -51.93 -0.40 0.08 16 26 H 0.08 0.54 3.02 -51.93 -0.16 0.38 16 27 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.39 4.16 7.27 -40.82 -0.30 3.86 16 30 H 0.39 6.14 8.49 -40.82 -0.35 5.79 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.07 0.61 6.54 -51.93 -0.34 0.27 16 37 H 0.06 0.50 6.65 -51.93 -0.35 0.15 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.42 6.94 -51.93 -0.36 0.06 16 40 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.52 4.09 -51.93 -0.21 0.31 16 42 H 0.06 0.43 6.99 -51.93 -0.36 0.06 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.43 5.53 -51.93 -0.29 0.14 16 46 H 0.06 0.46 7.48 -51.93 -0.39 0.07 16 47 H 0.06 0.47 7.97 -51.93 -0.41 0.06 16 LS Contribution 347.64 15.07 5.24 5.24 Total: -1.00 -32.02 347.64 -9.60 -41.63 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -7.97 Total: 3.19 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -2.01 Total: -3.89 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.07 Total: -49.48 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.02 -9.60 -41.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343914917.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.828 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds