Wall clock time and date at job start Tue Mar 31 2020 05:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.52992 * 109.47278 * 239.99827 * 2 1 3 5 5 C 1.50697 * 109.47554 * 59.99877 * 4 2 1 6 6 H 1.08001 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00505 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99687 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00201 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46991 * 59.99818 * 9 7 5 11 11 H 1.48498 * 109.47276 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47355 * 300.00458 * 9 7 5 13 13 C 1.53004 * 109.47200 * 119.99439 * 2 1 3 14 14 N 1.46499 * 109.47198 * 300.00182 * 13 2 1 15 15 C 1.34777 * 120.00065 * 179.97438 * 14 13 2 16 16 O 1.21593 * 119.99923 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00128 * 180.02562 * 15 14 13 18 18 C 1.46498 * 119.99828 * 180.27942 * 17 15 14 19 19 C 1.52997 * 110.01925 * 59.02099 * 18 17 15 20 20 C 1.53874 * 110.03095 * 297.62891 * 18 17 15 21 21 C 1.54375 * 106.54495 * 240.73069 * 20 18 17 22 22 C 1.54887 * 104.21444 * 23.57312 * 21 20 18 23 23 C 1.54265 * 110.03081 * 180.41096 * 18 17 15 24 24 H 1.09005 * 109.46870 * 300.00371 * 1 2 3 25 25 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 26 26 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47438 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 29 29 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 30 30 H 1.09000 * 109.47686 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.47284 * 300.00199 * 4 2 1 32 32 H 0.97010 * 119.99934 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47211 * 179.97438 * 13 2 1 34 34 H 1.09006 * 109.46815 * 59.99729 * 13 2 1 35 35 H 0.97000 * 120.00386 * 359.97438 * 14 13 2 36 36 H 0.97001 * 119.99727 * 359.97438 * 17 15 14 37 37 H 1.08997 * 109.47529 * 60.69859 * 19 18 17 38 38 H 1.09001 * 109.47296 * 180.69983 * 19 18 17 39 39 H 1.09003 * 109.47458 * 300.70077 * 19 18 17 40 40 H 1.08994 * 110.03470 * 0.02562 * 20 18 17 41 41 H 1.08997 * 110.03176 * 121.43496 * 20 18 17 42 42 H 1.09000 * 110.46620 * 264.89734 * 21 20 18 43 43 H 1.09001 * 110.60440 * 142.32165 * 21 20 18 44 44 H 1.09002 * 110.75597 * 203.75642 * 22 21 20 45 45 H 1.09006 * 110.75500 * 80.39416 * 22 21 20 46 46 H 1.08998 * 110.48646 * 214.35157 * 23 18 17 47 47 H 1.09001 * 110.48857 * 336.86419 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8673 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 2.6257 -1.5522 -3.8525 9 14 1.2483 0.3985 -5.2572 10 1 1.7444 1.7983 -5.2573 11 1 1.7422 -0.3023 -6.4696 12 1 -0.2366 0.3998 -5.2571 13 6 2.0400 -0.7211 1.2493 14 7 1.5517 -0.0305 2.4454 15 6 1.8769 -0.4911 3.6696 16 8 2.5759 -1.4797 3.7812 17 7 1.4272 0.1440 4.7700 18 6 1.7857 -0.3532 6.1006 19 6 3.3069 -0.3629 6.2637 20 6 1.2250 -1.7719 6.3019 21 6 0.2597 -1.6966 7.5043 22 6 -0.1643 -0.2079 7.5589 23 6 1.1434 0.5340 7.1869 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1300 -0.7217 -1.2490 31 1 1.6767 -1.7489 -1.2492 32 1 2.8601 -1.8837 -4.7335 33 1 3.1300 -0.7215 1.2491 34 1 1.6766 -1.7488 1.2494 35 1 0.9943 0.7584 2.3565 36 1 0.8698 0.9328 4.6809 37 1 3.6904 0.6517 6.1562 38 1 3.5640 -0.7457 7.2514 39 1 3.7503 -1.0016 5.4998 40 1 0.6865 -2.0907 5.4095 41 1 2.0365 -2.4671 6.5167 42 1 0.7726 -1.9811 8.4231 43 1 -0.6084 -2.3348 7.3398 44 1 -0.4907 0.0642 8.5627 45 1 -0.9466 -0.0020 6.8282 46 1 1.7990 0.6097 8.0544 47 1 0.9226 1.5245 6.7892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352904924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:04 Heat of formation + Delta-G solvation = -62.155206 kcal Electronic energy + Delta-G solvation = -23098.022415 eV Core-core repulsion = 19893.493048 eV Total energy + Delta-G solvation = -3204.529367 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.39001 -38.40064 -36.87976 -33.65401 -33.35754 -32.03742 -30.06153 -28.98813 -27.06962 -26.48624 -26.04805 -24.95638 -22.90688 -21.14144 -20.83109 -19.49349 -18.53112 -17.58130 -16.47012 -16.21119 -15.42395 -15.13850 -14.90184 -14.49367 -14.16106 -13.86027 -13.75210 -13.48536 -13.03469 -12.97683 -12.71169 -12.39211 -12.06165 -12.02966 -11.76225 -11.37525 -11.28604 -11.17444 -11.10039 -10.98873 -10.90054 -10.85376 -10.69110 -10.60783 -10.36649 -10.24544 -9.84474 -9.73994 -9.16866 -9.03235 -8.91475 -8.48174 -8.34190 -5.98339 -3.99662 2.93271 3.32754 3.38218 3.39414 3.48794 4.25473 4.41502 4.44535 4.50501 4.67568 5.09652 5.20976 5.26844 5.32476 5.37055 5.41561 5.51986 5.54012 5.66677 5.67757 5.68889 5.74212 5.78406 5.90324 5.93257 6.08648 6.20789 6.22637 6.26511 6.31962 6.34623 6.44971 6.64253 6.65220 6.73930 6.86879 7.09423 7.10006 7.13183 7.20429 7.66240 7.79068 8.00459 8.28695 8.42468 8.89959 9.05026 9.63260 11.13119 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039600 B = 0.003057 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.899520 B = 9158.585528 C = 9284.821264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 C -0.125 4.125 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.148 3.852 14 N -0.739 5.739 15 C 0.700 3.300 16 O -0.590 6.590 17 N -0.744 5.744 18 C 0.191 3.809 19 C -0.162 4.162 20 C -0.121 4.121 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.125 4.125 24 H 0.028 0.972 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.028 0.972 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.392 0.608 36 H 0.391 0.609 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.080 0.920 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.822 5.351 22.376 23.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.025 3.975 14 N -0.394 5.394 15 C 0.400 3.600 16 O -0.468 6.468 17 N -0.400 5.400 18 C 0.105 3.895 19 C -0.220 4.220 20 C -0.160 4.160 21 C -0.164 4.164 22 C -0.162 4.162 23 C -0.163 4.163 24 H 0.047 0.953 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.227 0.773 36 H 0.224 0.776 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.071 4.293 22.317 23.088 hybrid contribution -0.803 1.171 -1.095 1.793 sum -4.874 5.463 21.222 22.449 Atomic orbital electron populations 1.21744 0.95344 1.01096 1.00076 1.20912 0.95427 0.95852 0.95123 1.21744 1.00509 0.95937 1.00076 1.19075 0.96347 0.95215 0.89433 1.21150 1.31235 1.12047 0.90556 0.92339 1.25010 0.95332 0.95080 0.99056 1.69958 1.36932 1.22981 1.23530 0.86714 0.79131 0.79763 0.82701 1.20343 1.21401 1.20344 1.21449 0.98569 0.95571 0.81952 1.45406 1.56236 1.33122 1.04668 1.16024 0.80437 0.83056 0.80462 1.90875 1.42595 1.27454 1.85864 1.45409 1.56926 1.33114 1.04561 1.20710 0.94708 0.93402 0.80691 1.22281 0.94675 1.02416 1.02635 1.22530 0.98956 0.96176 0.98353 1.22416 0.99124 0.96391 0.98465 1.22503 0.97071 0.95386 1.01250 1.22676 0.97176 0.98320 0.98122 0.95338 0.91553 0.93415 0.93408 0.91560 0.95333 0.96352 0.96351 0.92988 0.92132 0.92143 0.77338 0.77563 0.93022 0.92230 0.89847 0.91046 0.91051 0.91705 0.91735 0.91510 0.91428 0.90136 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 2 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 3 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 4 C 0.04 0.91 4.04 -27.89 -0.11 0.80 16 5 C -0.51 -13.63 7.65 -34.44 -0.26 -13.90 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.15 2.68 4.56 -4.04 -0.02 2.66 16 14 N -0.74 -10.93 4.96 -65.22 -0.32 -11.25 16 15 C 0.70 10.70 7.70 -86.92 -0.67 10.03 16 16 O -0.59 -11.20 13.53 5.28 0.07 -11.13 16 17 N -0.74 -8.38 5.07 -51.37 -0.26 -8.64 16 18 C 0.19 1.98 0.94 -130.70 -0.12 1.86 16 19 C -0.16 -1.81 8.07 37.16 0.30 -1.51 16 20 C -0.12 -1.35 5.33 -25.56 -0.14 -1.49 16 21 C -0.13 -1.05 6.83 -25.02 -0.17 -1.22 16 22 C -0.12 -0.89 6.91 -24.74 -0.17 -1.06 16 23 C -0.12 -0.93 6.01 -25.07 -0.15 -1.08 16 24 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 25 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 29 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.39 4.89 6.18 -40.82 -0.25 4.64 16 36 H 0.39 3.39 8.26 -40.82 -0.34 3.05 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 1.21 6.13 -51.93 -0.32 0.89 16 40 H 0.07 0.97 7.30 -51.93 -0.38 0.59 16 41 H 0.07 0.84 7.67 -51.93 -0.40 0.45 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.53 7.85 -51.93 -0.41 0.13 16 47 H 0.07 0.46 7.73 -51.93 -0.40 0.06 16 LS Contribution 357.62 15.07 5.39 5.39 Total: -1.00 -30.84 357.62 -8.91 -39.75 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -8.40 Total: 4.20 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -1.10 Total: -8.73 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.15 Total: -45.71 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.07 Total: -11.13 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.84 -8.91 -39.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352904924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.406 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds