Wall clock time and date at job start Tue Mar 31 2020 05:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53118 * 109.52089 * 2 1 4 4 C 1.53038 * 109.27817 * 182.37685 * 3 2 1 5 5 N 1.46852 * 109.52224 * 59.18243 * 4 3 2 6 6 C 1.46897 * 111.00265 * 174.15490 * 5 4 3 7 7 C 1.53001 * 109.47161 * 169.99732 * 6 5 4 8 8 C 1.53000 * 109.46886 * 180.02562 * 7 6 5 9 9 N 1.46499 * 109.46840 * 180.02562 * 8 7 6 10 10 C 1.34779 * 119.99872 * 180.02562 * 9 8 7 11 11 O 1.21278 * 120.00071 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99944 * 180.02562 * 10 9 8 13 13 C 1.52997 * 109.47084 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47084 * 180.02562 * 13 12 10 15 15 H 1.07996 * 119.99751 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99788 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00327 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99743 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47171 * 89.99940 * 18 16 14 20 20 H 1.48508 * 109.46868 * 210.00073 * 18 16 14 21 21 H 1.48502 * 109.47066 * 329.99429 * 18 16 14 22 22 C 1.46842 * 111.19929 * 298.25802 * 5 4 3 23 23 C 1.53039 * 109.52507 * 61.73921 * 22 5 4 24 24 H 1.08997 * 109.47792 * 59.99630 * 1 2 3 25 25 H 1.09003 * 109.47082 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47076 * 299.99381 * 1 2 3 27 27 H 1.08991 * 109.52545 * 120.12876 * 2 1 3 28 28 H 1.08998 * 109.49987 * 62.44200 * 3 2 1 29 29 H 1.09000 * 109.54004 * 302.34134 * 3 2 1 30 30 H 1.08996 * 109.46918 * 299.16680 * 4 3 2 31 31 H 1.09007 * 109.45408 * 179.19113 * 4 3 2 32 32 H 1.09001 * 109.46391 * 50.00172 * 6 5 4 33 33 H 1.09002 * 109.47472 * 290.00443 * 6 5 4 34 34 H 1.09001 * 109.46652 * 60.00605 * 7 6 5 35 35 H 1.08992 * 109.47514 * 300.00694 * 7 6 5 36 36 H 1.09002 * 109.47398 * 300.00496 * 8 7 6 37 37 H 1.09001 * 109.47194 * 60.00677 * 8 7 6 38 38 H 0.97000 * 120.00420 * 0.02562 * 9 8 7 39 39 H 1.09002 * 109.47152 * 300.00160 * 12 10 9 40 40 H 1.09001 * 109.46980 * 60.00059 * 12 10 9 41 41 H 1.09002 * 109.47045 * 299.99967 * 13 12 10 42 42 H 1.09001 * 109.47375 * 60.00042 * 13 12 10 43 43 H 0.97000 * 120.00354 * 179.97438 * 17 16 14 44 44 H 1.09001 * 109.46578 * 181.75397 * 22 5 4 45 45 H 1.08995 * 109.46122 * 301.72485 * 22 5 4 46 46 H 1.08994 * 109.50793 * 180.87711 * 23 22 5 47 47 H 1.09003 * 109.50071 * 60.76301 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0416 1.4432 0.0000 4 6 3.5708 1.4371 -0.0599 5 7 4.0115 0.7426 -1.2765 6 6 5.4684 0.8376 -1.4384 7 6 5.9184 -0.0960 -2.5640 8 6 7.4359 0.0025 -2.7322 9 7 7.8666 -0.8909 -3.8104 10 6 9.1714 -0.9710 -4.1385 11 8 9.9889 -0.3030 -3.5414 12 6 9.6145 -1.8896 -5.2480 13 6 11.1321 -1.7922 -5.4153 14 6 11.5751 -2.7103 -6.5252 15 1 10.8470 -3.3042 -7.0576 16 6 12.9099 -2.7921 -6.8608 17 7 13.7965 -2.0686 -6.2128 18 14 13.4589 -3.9297 -8.2371 19 1 13.4354 -3.1937 -9.5267 20 1 14.8386 -4.4066 -7.9644 21 1 12.5392 -5.0931 -8.3142 22 6 3.5721 -0.6585 -1.2768 23 6 2.0430 -0.7151 -1.2531 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8942 -0.5156 0.8885 28 1 1.7151 1.9449 0.9109 29 1 1.6455 1.9704 -0.8679 30 1 3.9666 0.9225 0.8156 31 1 3.9376 2.4635 -0.0745 32 1 5.9570 0.5471 -0.5083 33 1 5.7404 1.8635 -1.6866 34 1 5.4297 0.1946 -3.4941 35 1 5.6464 -1.1218 -2.3159 36 1 7.7082 1.0284 -2.9803 37 1 7.9242 -0.2883 -1.8021 38 1 7.2128 -1.4249 -4.2883 39 1 9.3416 -2.9156 -5.0010 40 1 9.1266 -1.5977 -6.1780 41 1 11.4054 -0.7662 -5.6621 42 1 11.6197 -2.0843 -4.4852 43 1 14.7356 -2.1264 -6.4486 44 1 3.9400 -1.1544 -2.1751 45 1 3.9679 -1.1634 -0.3955 46 1 1.7174 -1.7551 -1.2376 47 1 1.6468 -0.2224 -2.1411 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359840333.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:07 Heat of formation + Delta-G solvation = -68.827992 kcal Electronic energy + Delta-G solvation = -21596.157210 eV Core-core repulsion = 18391.338489 eV Total energy + Delta-G solvation = -3204.818721 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.72784 -39.04069 -36.16799 -34.43840 -33.41825 -31.74547 -31.16207 -30.64863 -28.26608 -25.97495 -24.46034 -23.83037 -22.46170 -21.38563 -21.05543 -20.01772 -19.43280 -16.84030 -16.57285 -15.98961 -15.60872 -15.30407 -15.19284 -14.89480 -14.75819 -14.42997 -14.36880 -14.23208 -13.41998 -13.05592 -12.83739 -12.74497 -12.47242 -12.33460 -12.14680 -11.96285 -11.69053 -11.59071 -11.51323 -11.13307 -11.11794 -10.99053 -10.90684 -10.64236 -10.57898 -10.46383 -9.93095 -9.64120 -9.15492 -8.98341 -8.75119 -8.61867 -8.30095 -5.94209 -3.98573 3.30001 3.34605 3.38240 3.41013 3.43632 3.72886 4.35662 4.40273 4.42005 4.49078 4.70439 4.77239 4.88800 4.92347 5.03986 5.07206 5.14228 5.23523 5.28987 5.32850 5.35371 5.40584 5.46905 5.51042 5.53509 5.57069 5.64782 5.71243 5.77374 5.80027 5.80440 5.96416 6.04658 6.07300 6.26075 6.27680 6.71749 6.77153 6.80463 6.92611 7.76532 7.88923 7.92903 8.09526 8.40985 8.82315 9.10238 9.64795 11.16745 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.047814 B = 0.002080 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.463335 B =13456.003841 C =13927.380257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.111 4.111 4 C 0.055 3.945 5 N -0.537 5.537 6 C 0.059 3.941 7 C -0.134 4.134 8 C 0.121 3.879 9 N -0.745 5.745 10 C 0.509 3.491 11 O -0.536 6.536 12 C -0.130 4.130 13 C 0.036 3.964 14 C -0.527 4.527 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.046 3.954 23 C -0.112 4.112 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.397 0.603 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.261 0.739 44 H 0.083 0.917 45 H 0.032 0.968 46 H 0.065 0.935 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.852 4.693 12.748 30.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.149 4.149 4 C -0.073 4.073 5 N -0.262 5.262 6 C -0.070 4.070 7 C -0.171 4.171 8 C -0.004 4.004 9 N -0.399 5.399 10 C 0.297 3.703 11 O -0.411 6.411 12 C -0.170 4.170 13 C -0.001 4.001 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.081 4.081 23 C -0.150 4.150 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.230 0.770 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.102 0.898 45 H 0.050 0.950 46 H 0.084 0.916 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -27.256 5.464 12.809 30.608 hybrid contribution 0.425 -1.232 -0.210 1.320 sum -26.831 4.232 12.600 29.943 Atomic orbital electron populations 1.21807 0.95086 1.01660 1.01775 1.21197 0.95655 0.96272 0.98316 1.21643 0.94559 0.96507 1.02166 1.22090 0.95857 0.99024 0.90352 1.61994 1.12262 1.14225 1.37713 1.22022 0.86879 1.00646 0.97404 1.21939 0.95123 1.00196 0.99888 1.21158 0.93237 0.94867 0.91155 1.46186 1.09064 1.46477 1.38186 1.21564 0.80982 0.82957 0.84800 1.90666 1.52304 1.44576 1.53579 1.21863 1.02950 0.97383 0.94811 1.18902 0.86140 0.97836 0.97250 1.21232 0.92671 1.24746 1.17873 0.92596 1.25033 0.96869 0.95915 0.96629 1.69999 1.01803 1.40205 1.40835 0.86585 0.77944 0.81014 0.82353 1.20679 1.21236 1.19909 1.22246 0.95717 0.89000 1.01181 1.21659 0.94710 1.00248 0.98340 0.92557 0.92754 0.92812 0.91674 0.91665 0.91006 0.94968 0.90681 0.94509 0.90157 0.90308 0.91051 0.91778 0.92057 0.76974 0.90296 0.90244 0.95821 0.95844 0.92968 0.89839 0.95019 0.91620 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.20 37.15 0.34 -0.44 16 2 C -0.10 -0.60 2.79 -90.50 -0.25 -0.85 16 3 C -0.11 -0.71 5.38 -26.65 -0.14 -0.85 16 4 C 0.05 0.40 5.42 -3.83 -0.02 0.38 16 5 N -0.54 -4.47 4.81 -234.67 -1.13 -5.59 16 6 C 0.06 0.50 5.27 -3.83 -0.02 0.48 16 7 C -0.13 -1.18 4.58 -26.73 -0.12 -1.30 16 8 C 0.12 1.49 5.67 -4.04 -0.02 1.46 16 9 N -0.74 -10.53 5.56 -60.29 -0.33 -10.86 16 10 C 0.51 9.99 7.83 -10.98 -0.09 9.90 16 11 O -0.54 -12.97 15.98 5.56 0.09 -12.88 16 12 C -0.13 -2.68 5.64 -27.88 -0.16 -2.84 16 13 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 14 C -0.53 -15.13 9.11 -34.44 -0.31 -15.44 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.70 13.29 55.43 0.74 -26.97 16 18 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.05 0.35 4.85 -3.84 -0.02 0.33 16 23 C -0.11 -0.75 5.38 -26.65 -0.14 -0.89 16 24 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.59 6.21 -51.93 -0.32 0.27 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.40 4.35 8.47 -40.82 -0.35 4.01 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.08 0.62 5.81 -51.93 -0.30 0.32 16 45 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 370.55 15.07 5.58 5.58 Total: -1.00 -33.95 370.55 -10.21 -44.15 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -8.96 Total: -2.66 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -1.17 Total: -7.59 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -0.73 Total: -43.42 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.09 Total: -12.88 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.95 -10.21 -44.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359840333.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.675 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds