Wall clock time and date at job start Tue Mar 31 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47018 * 2 1 4 4 C 1.53006 * 109.45866 * 183.27577 * 3 2 1 5 5 C 1.52997 * 109.46968 * 299.70867 * 4 3 2 6 6 C 1.53040 * 109.46236 * 303.24810 * 3 2 1 7 7 C 1.53189 * 109.33965 * 181.37006 * 6 3 2 8 8 N 1.46941 * 108.77033 * 305.41341 * 7 6 3 9 9 C 1.34776 * 120.60174 * 233.57387 * 8 7 6 10 10 O 1.21581 * 120.00591 * 5.11820 * 9 8 7 11 11 N 1.34779 * 119.99521 * 185.11545 * 9 8 7 12 12 C 1.46503 * 119.99665 * 185.03610 * 11 9 8 13 13 C 1.53005 * 109.46869 * 179.97438 * 12 11 9 14 14 C 1.50699 * 109.47002 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00392 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00100 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00026 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00120 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47413 * 59.99709 * 18 16 14 20 20 H 1.48500 * 109.47234 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47023 * 299.99635 * 18 16 14 22 22 C 1.46928 * 118.76379 * 53.55938 * 8 7 6 23 23 C 1.53039 * 109.45939 * 63.32003 * 3 2 1 24 24 H 1.09000 * 109.47328 * 302.57585 * 1 2 3 25 25 H 1.09004 * 109.47317 * 62.57491 * 1 2 3 26 26 H 1.09007 * 109.47352 * 182.57258 * 1 2 3 27 27 H 1.08997 * 109.47135 * 239.99886 * 2 1 3 28 28 H 1.09003 * 109.46877 * 120.00025 * 2 1 3 29 29 H 1.08998 * 109.46963 * 59.71578 * 4 3 2 30 30 H 1.09003 * 109.47005 * 179.71096 * 4 3 2 31 31 H 1.08999 * 109.46855 * 179.07099 * 5 4 3 32 32 H 1.08993 * 109.47424 * 299.07356 * 5 4 3 33 33 H 1.09005 * 109.46751 * 59.07872 * 5 4 3 34 34 H 1.08996 * 109.50161 * 301.34071 * 6 3 2 35 35 H 1.09002 * 109.49525 * 61.40671 * 6 3 2 36 36 H 1.08993 * 109.58821 * 65.16917 * 7 6 3 37 37 H 1.09002 * 109.58496 * 185.59533 * 7 6 3 38 38 H 0.97002 * 120.00185 * 5.02946 * 11 9 8 39 39 H 1.09003 * 109.46900 * 299.99408 * 12 11 9 40 40 H 1.08996 * 109.47169 * 59.99982 * 12 11 9 41 41 H 1.08999 * 109.47322 * 299.99832 * 13 12 11 42 42 H 1.08998 * 109.47194 * 59.99544 * 13 12 11 43 43 H 0.96996 * 120.00684 * 179.97438 * 17 16 14 44 44 H 1.08998 * 109.58341 * 186.61937 * 22 8 7 45 45 H 1.09000 * 109.70425 * 66.26924 * 22 8 7 46 46 H 1.09004 * 109.49718 * 298.55945 * 23 3 2 47 47 H 1.08996 * 109.50213 * 58.62741 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5678 1.4429 -0.0824 5 6 4.1440 0.7045 1.1273 6 6 1.4640 2.1869 -1.2067 7 6 2.0034 3.6206 -1.2231 8 7 1.7104 4.2508 0.0716 9 6 1.0590 5.4292 0.1293 10 8 0.6262 5.9352 -0.8880 11 7 0.8873 6.0469 1.3149 12 6 0.0852 7.2702 1.3941 13 6 0.0492 7.7636 2.8420 14 6 -0.7754 9.0224 2.9233 15 1 -1.2288 9.4296 2.0317 16 6 -0.9518 9.6538 4.1363 17 7 -0.4001 9.1578 5.2222 18 14 -1.9745 11.2136 4.2373 19 1 -3.3572 10.9298 3.7761 20 1 -2.0093 11.6926 5.6425 21 1 -1.3693 12.2591 3.3734 22 6 2.1406 3.5721 1.3017 23 6 1.5990 2.1391 1.2893 24 1 -0.3634 0.5533 0.8660 25 1 -0.3634 0.4733 -0.9122 26 1 -0.3634 -1.0267 0.0461 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8824 0.9418 -0.9978 30 1 3.9310 2.4707 -0.0876 31 1 5.2318 0.6905 1.0601 32 1 3.8430 1.2152 2.0419 33 1 3.7677 -0.3185 1.1416 34 1 1.7590 1.6768 -2.1237 35 1 0.3765 2.2082 -1.1360 36 1 3.0811 3.6038 -1.3852 37 1 1.5203 4.1836 -2.0217 38 1 1.2947 5.6813 2.1157 39 1 0.5289 8.0373 0.7594 40 1 -0.9299 7.0616 1.0564 41 1 -0.3947 6.9965 3.4764 42 1 1.0642 7.9721 3.1801 43 1 -0.5239 9.6021 6.0755 44 1 1.7482 4.1036 2.1686 45 1 3.2294 3.5509 1.3483 46 1 0.5103 2.1613 1.3368 47 1 1.9897 1.5947 2.1490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362768136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:30 Heat of formation + Delta-G solvation = -54.402888 kcal Electronic energy + Delta-G solvation = -23239.487341 eV Core-core repulsion = 20035.294139 eV Total energy + Delta-G solvation = -3204.193201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.66904 -38.78358 -35.08797 -34.74179 -32.86172 -32.20536 -31.24837 -30.06431 -29.07305 -25.75902 -24.56575 -23.78665 -22.85532 -22.61013 -20.99781 -19.87658 -18.37831 -17.33671 -16.43395 -15.79625 -15.42250 -15.36112 -14.86312 -14.81684 -14.53962 -14.41176 -14.14343 -13.67680 -13.34883 -13.22331 -12.76569 -12.41387 -12.30497 -12.23281 -12.11789 -12.06492 -11.80793 -11.65187 -11.19424 -11.12613 -10.99883 -10.84721 -10.62860 -10.49972 -10.32149 -10.27315 -10.23429 -9.81493 -9.49733 -9.24561 -8.63644 -8.42080 -8.10794 -6.07019 -4.09544 2.98573 3.33055 3.36567 3.40392 3.60889 4.28040 4.41258 4.45168 4.51736 4.53628 4.92739 4.94401 5.00860 5.12441 5.19782 5.23003 5.26740 5.29971 5.30915 5.43143 5.47509 5.58182 5.67964 5.71181 5.77500 5.78839 5.79553 5.91012 5.91538 5.95949 6.01413 6.15263 6.20627 6.32409 6.33817 6.43870 6.70387 6.81039 7.05959 7.26263 7.58692 7.66027 7.92172 8.28292 8.43349 8.95171 9.04684 9.54982 11.04664 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027893 B = 0.003200 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.597999 B = 8747.796440 C = 8978.273341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.112 4.112 3 C -0.055 4.055 4 C -0.119 4.119 5 C -0.156 4.156 6 C -0.125 4.125 7 C 0.129 3.871 8 N -0.632 5.632 9 C 0.702 3.298 10 O -0.598 6.598 11 N -0.740 5.740 12 C 0.139 3.861 13 C 0.014 3.986 14 C -0.521 4.521 15 H 0.059 0.941 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.110 3.890 23 C -0.126 4.126 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.392 0.608 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.021 0.979 42 H 0.022 0.978 43 H 0.262 0.738 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.217 -20.704 -8.468 23.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.149 4.149 3 C -0.055 4.055 4 C -0.156 4.156 5 C -0.213 4.213 6 C -0.163 4.163 7 C 0.006 3.994 8 N -0.371 5.371 9 C 0.404 3.596 10 O -0.477 6.477 11 N -0.395 5.395 12 C 0.016 3.984 13 C -0.024 4.024 14 C -0.559 4.559 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.014 4.014 23 C -0.165 4.165 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.227 0.773 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.880 -20.256 -9.008 23.527 hybrid contribution -0.326 0.601 0.654 0.946 sum 7.554 -19.654 -8.354 22.653 Atomic orbital electron populations 1.21900 0.95978 1.01264 1.02342 1.21601 0.95865 0.95652 1.01810 1.20541 0.94984 0.94793 0.95200 1.21684 0.94325 1.01108 0.98483 1.21883 1.00294 1.00559 0.98556 1.22047 1.01373 0.95218 0.97708 1.21408 0.99631 0.92723 0.85679 1.47234 1.61845 1.21205 1.06837 1.15979 0.78786 0.80316 0.84543 1.90862 1.55938 1.66905 1.34013 1.45696 1.56303 1.29433 1.08063 1.21583 0.93023 0.82831 1.00916 1.19312 0.97831 0.96465 0.88770 1.21021 1.31766 1.08995 0.94163 0.92275 1.24990 0.95854 0.97759 0.95667 1.69942 1.44340 1.40115 0.98994 0.86570 0.80765 0.83238 0.76943 1.20113 1.21272 1.20109 1.21626 0.99435 0.93094 0.87224 1.22058 1.01685 0.95127 0.97583 0.92356 0.92452 0.93159 0.92172 0.91764 0.92124 0.91367 0.93080 0.92318 0.92593 0.91093 0.91056 0.92112 0.89077 0.77258 0.92752 0.92953 0.96061 0.96016 0.92827 0.90248 0.91457 0.91094 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.18 37.16 0.34 -0.90 16 2 C -0.11 -0.82 4.55 -26.73 -0.12 -0.94 16 3 C -0.06 -0.45 0.32 -154.47 -0.05 -0.50 16 4 C -0.12 -0.88 4.23 -26.73 -0.11 -0.99 16 5 C -0.16 -1.05 9.20 37.16 0.34 -0.70 16 6 C -0.13 -1.18 4.42 -26.61 -0.12 -1.30 16 7 C 0.13 1.53 5.97 -3.70 -0.02 1.51 16 8 N -0.63 -8.78 2.97 -178.49 -0.53 -9.31 16 9 C 0.70 13.02 8.29 -86.92 -0.72 12.30 16 10 O -0.60 -13.35 15.77 5.29 0.08 -13.27 16 11 N -0.74 -13.80 5.42 -65.22 -0.35 -14.16 16 12 C 0.14 3.09 5.62 -4.04 -0.02 3.07 16 13 C 0.01 0.35 5.09 -27.88 -0.14 0.20 16 14 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 15 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 18 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.11 1.19 5.88 -3.71 -0.02 1.17 16 23 C -0.13 -1.16 4.19 -26.61 -0.11 -1.27 16 24 H 0.06 0.50 6.42 -51.93 -0.33 0.17 16 25 H 0.06 0.48 6.55 -51.93 -0.34 0.14 16 26 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.44 6.59 -51.93 -0.34 0.10 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.57 4.98 -51.93 -0.26 0.31 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.40 6.50 -51.93 -0.34 0.06 16 33 H 0.06 0.35 6.46 -51.93 -0.34 0.02 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.77 6.51 -51.93 -0.34 0.43 16 36 H 0.06 0.63 6.69 -51.93 -0.35 0.29 16 37 H 0.09 1.27 7.00 -51.93 -0.36 0.91 16 38 H 0.39 6.42 6.06 -40.82 -0.25 6.17 16 39 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.08 0.89 5.74 -51.93 -0.30 0.59 16 45 H 0.07 0.65 6.71 -51.93 -0.35 0.30 16 46 H 0.07 0.74 6.53 -51.93 -0.34 0.40 16 47 H 0.08 0.60 6.52 -51.93 -0.34 0.26 16 LS Contribution 348.38 15.07 5.25 5.25 Total: -1.00 -31.76 348.38 -8.92 -40.68 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.91 Total: 1.55 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -1.17 Total: -1.74 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.15 Total: -49.02 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.08 Total: -13.27 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.76 -8.92 -40.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362768136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.722 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds