Wall clock time and date at job start Tue Mar 31 2020 05:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46879 * 2 1 4 4 C 1.52992 * 109.47333 * 120.00518 * 2 1 3 5 5 C 1.53037 * 109.46512 * 59.99735 * 4 2 1 6 6 C 1.53187 * 109.32001 * 181.37092 * 5 4 2 7 7 N 1.46934 * 108.77311 * 305.36971 * 6 5 4 8 8 C 1.34775 * 120.62760 * 233.58084 * 7 6 5 9 9 O 1.21286 * 120.00064 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.99977 * 179.97438 * 8 7 6 11 11 H 1.08996 * 109.47188 * 40.00225 * 10 8 7 12 12 N 1.46905 * 109.47125 * 160.00003 * 10 8 7 13 13 C 1.53001 * 109.47213 * 279.99847 * 10 8 7 14 14 C 1.52995 * 109.47332 * 174.99878 * 13 10 8 15 15 C 1.50694 * 109.47452 * 180.02562 * 14 13 10 16 16 H 1.08004 * 119.99671 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00375 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99760 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00357 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47174 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47230 * 119.99414 * 19 17 15 22 22 H 1.48494 * 109.47232 * 240.00180 * 19 17 15 23 23 C 1.46919 * 118.74056 * 53.85613 * 7 6 5 24 24 C 1.53039 * 109.44703 * 180.02562 * 4 2 1 25 25 H 1.08998 * 109.47325 * 59.99467 * 1 2 3 26 26 H 1.09000 * 109.47381 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47121 * 299.99264 * 1 2 3 28 28 H 1.09007 * 109.46396 * 240.00602 * 2 1 3 29 29 H 1.09003 * 109.46805 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47577 * 300.00378 * 3 2 1 31 31 H 1.08997 * 109.46900 * 60.00302 * 3 2 1 32 32 H 1.09002 * 109.46002 * 300.02650 * 4 2 1 33 33 H 1.09002 * 109.49846 * 61.41463 * 5 4 2 34 34 H 1.09000 * 109.52183 * 301.34633 * 5 4 2 35 35 H 1.08994 * 109.59050 * 185.57939 * 6 5 4 36 36 H 1.09005 * 109.70026 * 65.22389 * 6 5 4 37 37 H 1.00901 * 110.99869 * 296.04907 * 12 10 8 38 38 H 1.00896 * 110.99543 * 60.00030 * 12 10 8 39 39 H 1.08997 * 109.47039 * 295.00606 * 13 10 8 40 40 H 1.09001 * 109.46723 * 55.00082 * 13 10 8 41 41 H 1.09001 * 109.46974 * 300.00562 * 14 13 10 42 42 H 1.09004 * 109.46840 * 59.99935 * 14 13 10 43 43 H 0.97001 * 119.99959 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.58612 * 65.92487 * 23 7 6 45 45 H 1.08999 * 109.58936 * 186.35411 * 23 7 6 46 46 H 1.09003 * 109.49706 * 298.56824 * 24 4 2 47 47 H 1.08999 * 109.50086 * 58.67311 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5298 -2.1641 1.2489 6 6 2.0139 -2.8731 2.5176 7 7 3.4758 -2.7499 2.5996 8 6 4.2497 -3.8434 2.7472 9 8 3.7406 -4.9422 2.8141 10 6 5.7477 -3.7008 2.8291 11 1 5.9971 -2.8267 3.4306 12 7 6.3207 -4.9024 3.4503 13 6 6.3217 -3.5316 1.4210 14 6 7.8250 -3.2624 1.5120 15 6 8.3903 -3.0951 0.1251 16 1 7.7421 -3.1734 -0.7352 17 6 9.7350 -2.8431 -0.0455 18 7 10.5244 -2.7483 1.0021 19 14 10.4359 -2.6364 -1.7647 20 1 9.3481 -2.7883 -2.7642 21 1 11.0419 -1.2869 -1.8933 22 1 11.4746 -3.6704 -2.0034 23 6 4.0774 -1.4117 2.5238 24 6 3.5704 -0.7204 1.2488 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6763 -0.2077 2.1390 33 1 1.9134 -2.6856 0.3719 34 1 0.4401 -2.1651 1.2248 35 1 1.7377 -3.9266 2.4755 36 1 1.5585 -2.4106 3.3934 37 1 6.0068 -5.0010 4.4042 38 1 6.1032 -5.7269 2.9110 39 1 6.1496 -4.4418 0.8467 40 1 5.8315 -2.6924 0.9273 41 1 7.9970 -2.3521 2.0863 42 1 8.3151 -4.1015 2.0057 43 1 11.4704 -2.5706 0.8821 44 1 3.7867 -0.8303 3.3988 45 1 5.1630 -1.5007 2.4857 46 1 3.9344 -1.2558 0.3719 47 1 3.9337 0.3070 1.2252 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424125233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:20 Heat of formation + Delta-G solvation = -70.133772 kcal Electronic energy + Delta-G solvation = -23428.535025 eV Core-core repulsion = 20223.659681 eV Total energy + Delta-G solvation = -3204.875344 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.37050 -38.39411 -35.45310 -35.28151 -32.80864 -31.48812 -31.11490 -30.07477 -27.47538 -26.62331 -25.28239 -23.64174 -22.78067 -21.32814 -20.29470 -20.00307 -18.73831 -17.29109 -16.34022 -15.81374 -15.49637 -15.28061 -14.83936 -14.53117 -14.35087 -14.29432 -13.97394 -13.86894 -13.42091 -12.86857 -12.80787 -12.42904 -12.35293 -12.22911 -12.00128 -11.96337 -11.61562 -11.48786 -11.27499 -11.11854 -10.91000 -10.67183 -10.62583 -10.52946 -10.40097 -10.29649 -9.98147 -9.78150 -9.35278 -8.98172 -8.58235 -8.33443 -8.17793 -5.93702 -3.95643 2.79593 3.12055 3.33681 3.41487 3.45184 4.47595 4.49176 4.52134 4.58315 4.77964 4.90939 4.98928 5.08629 5.13312 5.20771 5.27495 5.34777 5.39156 5.42014 5.43044 5.51520 5.63604 5.65987 5.70629 5.74725 5.76852 5.83091 5.85015 5.90001 5.97270 6.03872 6.09097 6.19456 6.34791 6.45745 6.59036 6.68698 7.09387 7.39185 7.56752 7.76437 7.82202 7.96490 8.13594 8.32894 8.48958 9.12490 9.67594 11.17244 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014161 B = 0.004705 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.795694 B = 5949.503863 C = 7436.242193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.080 4.080 5 C -0.130 4.130 6 C 0.109 3.891 7 N -0.610 5.610 8 C 0.485 3.515 9 O -0.558 6.558 10 C 0.077 3.923 11 H 0.097 0.903 12 N -0.807 5.807 13 C -0.096 4.096 14 C 0.032 3.968 15 C -0.520 4.520 16 H 0.052 0.948 17 C 0.058 3.942 18 N -0.892 5.892 19 Si 0.887 3.113 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.102 3.898 24 C -0.133 4.133 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.333 0.667 38 H 0.347 0.653 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.012 0.988 42 H 0.035 0.965 43 H 0.259 0.741 44 H 0.066 0.934 45 H 0.099 0.901 46 H 0.073 0.927 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.548 6.863 2.594 20.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.099 4.099 5 C -0.168 4.168 6 C -0.014 4.014 7 N -0.344 5.344 8 C 0.273 3.727 9 O -0.436 6.436 10 C -0.038 4.038 11 H 0.115 0.885 12 N -0.335 5.335 13 C -0.134 4.134 14 C -0.005 4.005 15 C -0.559 4.559 16 H 0.070 0.930 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.715 3.285 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.021 4.021 24 C -0.171 4.171 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.145 0.855 38 H 0.161 0.839 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.031 0.969 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.117 0.883 46 H 0.092 0.908 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.904 6.640 2.558 20.199 hybrid contribution -0.624 -0.054 -0.878 1.078 sum -19.528 6.587 1.680 20.678 Atomic orbital electron populations 1.21897 0.95495 1.01712 1.01484 1.21139 0.95473 0.96264 0.98233 1.21902 1.01622 0.95763 1.01439 1.21184 0.95371 0.95276 0.98074 1.22024 1.00672 0.95719 0.98397 1.21536 0.80508 1.02109 0.97247 1.48246 1.06485 1.07087 1.72588 1.22731 0.91918 0.83663 0.74427 1.90622 1.75821 1.25901 1.51257 1.21858 0.85647 0.95745 1.00593 0.88497 1.59024 1.63264 1.05233 1.05990 1.21687 1.00917 1.00614 0.90188 1.19014 0.87355 0.97567 0.96605 1.21302 0.93365 1.48350 0.92866 0.92986 1.24979 0.97229 0.95617 0.96438 1.69983 1.04745 1.49624 1.28812 0.86616 0.79113 0.77618 0.85112 1.19874 1.21103 1.21061 1.21976 0.99827 0.82490 0.97831 1.22128 0.95136 1.01379 0.98443 0.92939 0.92469 0.92852 0.91145 0.91992 0.92955 0.92844 0.91205 0.91457 0.90794 0.89417 0.92089 0.85522 0.83885 0.92937 0.92687 0.96927 0.94694 0.93168 0.91605 0.88283 0.90848 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.84 37.16 0.33 -0.77 16 2 C -0.09 -0.78 2.50 -90.62 -0.23 -1.01 16 3 C -0.15 -1.20 8.84 37.16 0.33 -0.88 16 4 C -0.08 -0.73 1.74 -90.58 -0.16 -0.89 16 5 C -0.13 -1.29 5.04 -26.62 -0.13 -1.42 16 6 C 0.11 1.27 6.43 -3.71 -0.02 1.25 16 7 N -0.61 -8.25 2.97 -172.50 -0.51 -8.76 16 8 C 0.48 8.03 6.94 -10.99 -0.08 7.96 16 9 O -0.56 -10.68 15.66 5.55 0.09 -10.59 16 10 C 0.08 1.33 2.29 -68.86 -0.16 1.17 16 11 H 0.10 1.58 6.78 -51.93 -0.35 1.23 16 12 N -0.81 -14.03 8.44 -5.65 -0.05 -14.08 16 13 C -0.10 -1.95 4.46 -26.73 -0.12 -2.07 16 14 C 0.03 0.81 4.86 -27.89 -0.14 0.67 16 15 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 16 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 19 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 C 0.10 1.18 5.79 -3.48 -0.02 1.16 16 24 C -0.13 -1.41 5.06 -26.38 -0.13 -1.54 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.42 6.40 -51.93 -0.33 0.08 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.52 6.40 -51.93 -0.33 0.19 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.61 6.36 -51.93 -0.33 0.28 16 35 H 0.09 1.17 7.00 -51.93 -0.36 0.81 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.33 5.05 9.06 -39.29 -0.36 4.70 16 38 H 0.35 6.14 8.58 -39.29 -0.34 5.80 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.05 1.06 6.99 -51.93 -0.36 0.69 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.10 1.29 4.85 -51.93 -0.25 1.04 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.08 0.76 6.36 -51.93 -0.33 0.43 16 LS Contribution 358.87 15.07 5.41 5.41 Total: -1.00 -31.62 358.87 -8.65 -40.28 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -8.37 Total: 6.87 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -0.94 Total: -9.73 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.18 Total: -48.88 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.62 -8.65 -40.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424125233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.856 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds