Wall clock time and date at job start Tue Mar 31 2020 05:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47494 * 2 1 4 4 C 1.53006 * 110.01752 * 56.97201 * 3 2 1 5 5 N 1.46506 * 109.46653 * 61.94142 * 4 3 2 6 6 C 1.34776 * 119.99640 * 175.42590 * 5 4 3 7 7 O 1.21280 * 120.00130 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99577 * 180.02562 * 6 5 4 9 9 H 1.08996 * 109.47660 * 40.00490 * 8 6 5 10 10 N 1.46904 * 109.47042 * 160.00729 * 8 6 5 11 11 C 1.53002 * 109.47231 * 279.99884 * 8 6 5 12 12 C 1.53002 * 109.47498 * 175.00142 * 11 8 6 13 13 C 1.50694 * 109.47202 * 180.02562 * 12 11 8 14 14 H 1.08005 * 120.00306 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99765 * 179.72199 * 13 12 11 16 16 N 1.31511 * 120.00162 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00015 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46923 * 90.00465 * 17 15 13 19 19 H 1.48494 * 109.47549 * 210.00293 * 17 15 13 20 20 H 1.48498 * 109.47229 * 330.00689 * 17 15 13 21 21 C 1.54260 * 110.03444 * 178.36768 * 3 2 1 22 22 C 1.54957 * 104.16081 * 95.75579 * 21 3 2 23 23 C 1.54892 * 102.78137 * 37.88697 * 22 21 3 24 24 C 1.53877 * 110.03360 * 295.58787 * 3 2 1 25 25 H 1.08997 * 109.47269 * 293.66437 * 1 2 3 26 26 H 1.09001 * 109.46556 * 53.66362 * 1 2 3 27 27 H 1.09000 * 109.47134 * 173.65971 * 1 2 3 28 28 H 1.09003 * 109.47315 * 239.99515 * 2 1 3 29 29 H 1.09008 * 109.46740 * 119.99834 * 2 1 3 30 30 H 1.08997 * 109.47249 * 301.94669 * 4 3 2 31 31 H 1.08996 * 109.47462 * 181.93894 * 4 3 2 32 32 H 0.97002 * 120.00081 * 355.43419 * 5 4 3 33 33 H 1.00895 * 111.00139 * 59.99241 * 10 8 6 34 34 H 1.00903 * 110.99659 * 183.95523 * 10 8 6 35 35 H 1.09005 * 109.46638 * 55.00407 * 11 8 6 36 36 H 1.08997 * 109.47743 * 295.00729 * 11 8 6 37 37 H 1.08999 * 109.46752 * 59.99770 * 12 11 8 38 38 H 1.09004 * 109.46881 * 300.00687 * 12 11 8 39 39 H 0.96993 * 120.00230 * 179.97438 * 16 15 13 40 40 H 1.09008 * 110.48420 * 214.40082 * 21 3 2 41 41 H 1.09001 * 110.48581 * 337.04061 * 21 3 2 42 42 H 1.09001 * 110.72483 * 279.57127 * 22 21 3 43 43 H 1.08998 * 110.92626 * 156.29435 * 22 21 3 44 44 H 1.08996 * 110.48703 * 203.40424 * 23 22 21 45 45 H 1.09003 * 110.48358 * 80.76017 * 23 22 21 46 46 H 1.09002 * 110.02922 * 359.94324 * 24 3 2 47 47 H 1.08998 * 110.03506 * 121.37851 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4760 2.1975 1.2053 5 7 1.9417 1.5625 2.4408 6 6 1.6449 2.1131 3.6346 7 8 0.9920 3.1339 3.6862 8 6 2.1244 1.4603 4.9054 9 1 3.1402 1.0914 4.7636 10 7 2.1084 2.4432 5.9971 11 6 1.2019 0.2917 5.2581 12 6 1.7582 -0.4476 6.4766 13 6 0.8499 -1.5989 6.8235 14 1 -0.0354 -1.7851 6.2335 15 6 1.1524 -2.4185 7.8901 16 7 2.2334 -2.1952 8.6051 17 14 0.0262 -3.8453 8.3206 18 1 0.4617 -5.0592 7.5844 19 1 0.0900 -4.1030 9.7816 20 1 -1.3684 -3.5080 7.9379 21 6 3.5821 1.4577 0.0413 22 6 3.9997 1.5979 -1.4443 23 6 2.9327 2.5677 -2.0102 24 6 1.6272 2.1476 -1.3039 25 1 -0.3633 0.4125 0.9412 26 1 -0.3632 0.6089 -0.8279 27 1 -0.3633 -1.0214 -0.1135 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 0.3868 2.1727 1.1723 31 1 1.8169 3.2324 1.1779 32 1 2.4636 0.7460 2.3995 33 1 1.1771 2.8006 6.1483 34 1 2.4863 2.0480 6.8450 35 1 1.1443 -0.3936 4.4123 36 1 0.2060 0.6711 5.4867 37 1 1.8159 0.2377 7.3222 38 1 2.7542 -0.8270 6.2479 39 1 2.4460 -2.7715 9.3557 40 1 3.9398 2.3094 0.6200 41 1 3.9618 0.5252 0.4588 42 1 3.9528 0.6339 -1.9509 43 1 4.9972 2.0290 -1.5293 44 1 2.8394 2.4448 -3.0892 45 1 3.1852 3.5989 -1.7631 46 1 1.0643 1.4618 -1.9371 47 1 1.0250 3.0276 -1.0780 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424127300.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:32 Heat of formation + Delta-G solvation = -81.291946 kcal Electronic energy + Delta-G solvation = -23017.877492 eV Core-core repulsion = 19812.518293 eV Total energy + Delta-G solvation = -3205.359198 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.21823 -38.88034 -35.48533 -34.54242 -32.86225 -32.78822 -29.87566 -29.10748 -28.93222 -26.68434 -25.06624 -23.50424 -22.88261 -21.10261 -20.55002 -19.68515 -18.68874 -17.28815 -16.28477 -16.21718 -15.69948 -15.15461 -14.99842 -14.70890 -14.47435 -14.19499 -13.91578 -13.79344 -13.49888 -13.04259 -12.92122 -12.55025 -12.31917 -12.11578 -11.94356 -11.63749 -11.61134 -11.35845 -11.27231 -11.07031 -10.92299 -10.82254 -10.71576 -10.68324 -10.59262 -10.48878 -9.97874 -9.87917 -9.27039 -9.17540 -8.86278 -8.43908 -8.15385 -6.08431 -4.11482 3.01434 3.26783 3.33662 3.36106 3.38044 4.29269 4.31081 4.39356 4.40108 4.91466 4.95672 5.01822 5.05329 5.16190 5.22688 5.24205 5.27903 5.39039 5.42924 5.46263 5.53460 5.58182 5.62298 5.67411 5.75607 5.76740 5.80214 5.82598 5.93539 5.98619 6.07709 6.09927 6.14980 6.26153 6.30750 6.53736 6.62737 6.88921 7.47147 7.53008 7.62760 7.77434 7.88770 7.93686 8.31605 8.54731 8.94528 9.53369 11.02483 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020335 B = 0.003569 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.614225 B = 7844.204668 C = 8458.676891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.111 4.111 3 C -0.073 4.073 4 C 0.132 3.868 5 N -0.731 5.731 6 C 0.524 3.476 7 O -0.541 6.541 8 C 0.074 3.926 9 H 0.095 0.905 10 N -0.831 5.831 11 C -0.136 4.136 12 C 0.024 3.976 13 C -0.523 4.523 14 H 0.054 0.946 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.113 4.113 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.400 0.600 33 H 0.345 0.655 34 H 0.353 0.647 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.261 0.739 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.158 6.369 -20.587 21.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.149 4.149 3 C -0.073 4.073 4 C 0.009 3.991 5 N -0.384 5.384 6 C 0.311 3.689 7 O -0.417 6.417 8 C -0.041 4.041 9 H 0.113 0.887 10 N -0.363 5.363 11 C -0.176 4.176 12 C -0.013 4.013 13 C -0.562 4.562 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.156 4.156 22 C -0.161 4.161 23 C -0.162 4.162 24 C -0.151 4.151 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.235 0.765 33 H 0.158 0.842 34 H 0.169 0.831 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.266 7.494 -20.844 22.266 hybrid contribution -0.978 -2.006 0.764 2.359 sum 1.287 5.489 -20.080 20.857 Atomic orbital electron populations 1.21870 0.95660 1.01690 1.02200 1.21622 0.96231 0.94915 1.02098 1.21481 0.95586 0.95722 0.94551 1.21454 0.99055 0.96278 0.82362 1.45999 1.57358 1.29575 1.05503 1.20865 0.79035 0.84025 0.84988 1.90627 1.39332 1.24362 1.87407 1.21469 1.00897 0.92048 0.89669 0.88736 1.58740 1.29712 1.37805 1.10014 1.22368 0.98265 0.95538 1.01454 1.19101 0.96405 0.94681 0.91094 1.21184 1.09088 1.12362 1.13526 0.92741 1.25012 0.95295 0.97797 0.96216 1.69946 1.25150 1.38845 1.19263 0.86588 0.81160 0.82649 0.77590 1.20623 1.21152 1.19884 1.22518 0.93903 1.02315 0.96831 1.22483 0.98446 0.99436 0.95743 1.22359 0.94990 0.99395 0.99472 1.22221 0.97650 1.00136 0.95093 0.92205 0.92629 0.92739 0.91726 0.91690 0.91657 0.91696 0.76544 0.84177 0.83138 0.92611 0.92744 0.96417 0.96356 0.92888 0.91107 0.91306 0.91589 0.91708 0.91837 0.91681 0.91141 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.16 37.16 0.34 -1.12 16 2 C -0.11 -0.97 4.50 -26.73 -0.12 -1.09 16 3 C -0.07 -0.64 0.41 -153.39 -0.06 -0.70 16 4 C 0.13 1.52 3.83 -4.04 -0.02 1.50 16 5 N -0.73 -9.47 5.07 -60.29 -0.31 -9.78 16 6 C 0.52 8.79 7.08 -10.99 -0.08 8.71 16 7 O -0.54 -10.79 16.25 5.56 0.09 -10.70 16 8 C 0.07 1.28 3.21 -68.86 -0.22 1.06 16 9 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 10 N -0.83 -14.61 8.94 -5.65 -0.05 -14.66 16 11 C -0.14 -2.69 4.78 -26.73 -0.13 -2.82 16 12 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 13 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 14 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 17 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.12 -0.99 5.26 -25.04 -0.13 -1.13 16 22 C -0.12 -0.90 6.91 -24.70 -0.17 -1.07 16 23 C -0.12 -0.89 6.83 -25.07 -0.17 -1.06 16 24 C -0.11 -0.88 5.50 -25.61 -0.14 -1.02 16 25 H 0.06 0.65 6.75 -51.93 -0.35 0.30 16 26 H 0.05 0.46 6.62 -51.93 -0.34 0.12 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.61 7.01 -51.92 -0.36 0.24 16 30 H 0.07 0.81 6.47 -51.93 -0.34 0.47 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.40 4.54 7.03 -40.82 -0.29 4.25 16 33 H 0.35 6.17 8.58 -39.29 -0.34 5.83 16 34 H 0.35 6.21 7.55 -39.29 -0.30 5.91 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.07 0.67 7.86 -51.92 -0.41 0.26 16 41 H 0.07 0.56 7.84 -51.93 -0.41 0.16 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.51 6.67 -51.93 -0.35 0.17 16 47 H 0.07 0.53 7.67 -51.93 -0.40 0.14 16 LS Contribution 363.68 15.07 5.48 5.48 Total: -1.00 -30.76 363.68 -8.93 -39.69 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -8.42 Total: 10.45 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -1.44 Total: -11.43 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.38 Total: -49.75 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.76 -8.93 -39.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424127300.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.601 kcal (2) G-P(sol) polarization free energy of solvation -30.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds