Wall clock time and date at job start Tue Mar 31 2020 05:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47285 * 2 1 4 4 C 1.52999 * 110.38987 * 300.83089 * 3 2 1 5 5 C 1.53007 * 109.46882 * 302.38864 * 4 3 2 6 6 C 1.54283 * 110.34762 * 178.59518 * 3 2 1 7 7 C 1.54385 * 104.95958 * 241.13269 * 6 3 2 8 8 N 1.48144 * 104.61917 * 336.13091 * 7 6 3 9 9 C 1.34775 * 127.83537 * 219.58899 * 8 7 6 10 10 O 1.21282 * 120.00100 * 179.97438 * 9 8 7 11 11 C 1.50708 * 120.00359 * 359.97438 * 9 8 7 12 12 H 1.09001 * 109.46827 * 39.99785 * 11 9 8 13 13 N 1.46897 * 109.47303 * 160.00126 * 11 9 8 14 14 C 1.52997 * 109.46864 * 279.99992 * 11 9 8 15 15 C 1.53001 * 109.47329 * 174.99816 * 14 11 9 16 16 C 1.50695 * 109.47469 * 179.97438 * 15 14 11 17 17 H 1.08007 * 119.99988 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99948 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00103 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99848 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46875 * 0.02562 * 20 18 16 22 22 H 1.48489 * 109.47130 * 120.00390 * 20 18 16 23 23 H 1.48507 * 109.46978 * 240.00553 * 20 18 16 24 24 C 1.48144 * 104.32378 * 39.58632 * 8 7 6 25 25 H 1.08999 * 109.46964 * 306.35164 * 1 2 3 26 26 H 1.08995 * 109.47071 * 66.35243 * 1 2 3 27 27 H 1.09001 * 109.47427 * 186.35703 * 1 2 3 28 28 H 1.09002 * 109.46875 * 240.00316 * 2 1 3 29 29 H 1.09001 * 109.47339 * 120.00264 * 2 1 3 30 30 H 1.08997 * 109.47431 * 62.38251 * 4 3 2 31 31 H 1.09003 * 109.47532 * 182.38873 * 4 3 2 32 32 H 1.08999 * 109.46888 * 183.59897 * 5 4 3 33 33 H 1.09003 * 109.46635 * 303.59337 * 5 4 3 34 34 H 1.08999 * 109.47073 * 63.59772 * 5 4 3 35 35 H 1.08997 * 110.34540 * 122.25470 * 6 3 2 36 36 H 1.09009 * 110.42384 * 0.04616 * 6 3 2 37 37 H 1.09003 * 110.40400 * 217.34144 * 7 6 3 38 38 H 1.09000 * 110.50942 * 94.96653 * 7 6 3 39 39 H 1.00893 * 111.00012 * 59.99676 * 13 11 9 40 40 H 1.00896 * 110.99960 * 183.95395 * 13 11 9 41 41 H 1.08997 * 109.47465 * 295.00118 * 14 11 9 42 42 H 1.09008 * 109.47239 * 54.99735 * 14 11 9 43 43 H 1.09005 * 109.46509 * 299.99919 * 15 14 11 44 44 H 1.08996 * 109.46651 * 59.99982 * 15 14 11 45 45 H 0.96997 * 120.00201 * 179.97438 * 19 18 16 46 46 H 1.09001 * 110.40633 * 79.19822 * 24 8 7 47 47 H 1.08996 * 110.40281 * 201.63233 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5248 2.1901 -1.2315 5 6 1.9677 1.4537 -2.4974 6 6 3.5823 1.4662 0.0355 7 6 3.9395 2.2030 1.3443 8 7 2.7495 3.0333 1.6427 9 6 2.7192 4.2914 2.1252 10 8 1.6557 4.8416 2.3177 11 6 4.0069 5.0146 2.4254 12 1 4.7370 4.7952 1.6464 13 7 3.7572 6.4615 2.4691 14 6 4.5494 4.5497 3.7783 15 6 5.9170 5.1891 4.0265 16 6 6.4511 4.7316 5.3593 17 1 5.8731 4.0523 5.9684 18 6 7.6781 5.1794 5.8007 19 7 8.3822 6.0061 5.0589 20 14 8.3405 4.6118 7.4526 21 1 7.3641 3.6902 8.0872 22 1 9.6303 3.9040 7.2520 23 1 8.5536 5.7896 8.3317 24 6 1.6005 2.1671 1.2905 25 1 -0.3633 0.6091 0.8277 26 1 -0.3633 0.4122 -0.9413 27 1 -0.3634 -1.0213 0.1138 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 0.4362 2.2356 -1.1998 31 1 1.9308 3.2016 -1.2387 32 1 1.6557 2.0199 -3.3750 33 1 3.0530 1.3519 -2.4976 34 1 1.5100 0.4647 -2.5214 35 1 3.9728 2.0103 -0.8245 36 1 3.9781 0.4506 0.0521 37 1 4.8164 2.8338 1.1981 38 1 4.1161 1.4888 2.1486 39 1 3.0831 6.6907 3.1840 40 1 4.6164 6.9728 2.6050 41 1 3.8601 4.8480 4.5682 42 1 4.6508 3.4643 3.7756 43 1 6.6063 4.8905 3.2366 44 1 5.8155 6.2743 4.0292 45 1 9.2453 6.3214 5.3697 46 1 1.4105 1.4459 2.0854 47 1 0.7126 2.7710 1.1037 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424145895.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:02 Heat of formation + Delta-G solvation = -64.505283 kcal Electronic energy + Delta-G solvation = -23280.985371 eV Core-core repulsion = 20076.354097 eV Total energy + Delta-G solvation = -3204.631274 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.39470 -38.51284 -35.42166 -34.88431 -32.84100 -31.55417 -30.25168 -29.86288 -28.60210 -26.45401 -24.79732 -23.73028 -22.95666 -22.43391 -20.43490 -19.03774 -18.53673 -17.31029 -16.30002 -15.78159 -15.69788 -15.38033 -14.91615 -14.49900 -14.31911 -14.04987 -13.83884 -13.51995 -13.12742 -13.04833 -12.89497 -12.58031 -12.48772 -12.17644 -12.06857 -11.95139 -11.85831 -11.61361 -11.30473 -11.19602 -11.06952 -10.92898 -10.66374 -10.63226 -10.47740 -10.40960 -9.97896 -9.87471 -9.26289 -9.17530 -8.57693 -8.44498 -8.16314 -6.08789 -4.11761 2.97170 3.09370 3.25856 3.33913 3.37954 4.24924 4.39326 4.44818 4.52423 4.90146 4.92007 4.93690 5.08218 5.13232 5.18828 5.23252 5.27667 5.34544 5.37295 5.45303 5.50574 5.56446 5.66599 5.68128 5.71878 5.78020 5.80495 5.87549 5.89018 5.91930 5.98096 6.04059 6.11854 6.24772 6.30974 6.40746 6.55829 6.88157 7.47220 7.53017 7.62513 7.77099 7.88517 7.92785 8.31369 8.48342 8.94384 9.53198 11.02156 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023973 B = 0.003583 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.707103 B = 7813.535009 C = 8177.684746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.109 4.109 3 C -0.071 4.071 4 C -0.110 4.110 5 C -0.153 4.153 6 C -0.127 4.127 7 C 0.098 3.902 8 N -0.624 5.624 9 C 0.547 3.453 10 O -0.541 6.541 11 C 0.079 3.921 12 H 0.095 0.905 13 N -0.831 5.831 14 C -0.136 4.136 15 C 0.025 3.975 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.114 3.886 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.345 0.655 40 H 0.354 0.646 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.261 0.739 46 H 0.068 0.932 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.643 -12.050 -13.339 21.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.147 4.147 3 C -0.072 4.072 4 C -0.147 4.147 5 C -0.210 4.210 6 C -0.165 4.165 7 C -0.025 4.025 8 N -0.360 5.360 9 C 0.336 3.664 10 O -0.417 6.417 11 C -0.036 4.036 12 H 0.113 0.887 13 N -0.363 5.363 14 C -0.176 4.176 15 C -0.012 4.012 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.008 4.008 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.158 0.842 40 H 0.169 0.831 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.319 -11.591 -13.935 21.916 hybrid contribution 0.963 -0.421 1.930 2.198 sum -11.356 -12.012 -12.005 20.430 Atomic orbital electron populations 1.21852 0.95831 1.01519 1.02150 1.21616 0.96023 0.94819 1.02236 1.21537 0.95232 0.95388 0.95028 1.21577 1.00763 0.99048 0.93314 1.21846 1.01571 1.00393 0.97189 1.22702 0.94776 1.01115 0.97942 1.22446 0.89226 0.94175 0.96645 1.48937 1.08269 1.13395 1.65350 1.20552 0.91669 0.79050 0.75088 1.90632 1.32547 1.65753 1.52742 1.21427 0.92742 0.89670 0.99720 0.88744 1.58738 1.16952 1.04114 1.56520 1.22367 1.00604 1.01037 0.93617 1.19098 0.89256 0.95793 0.97062 1.21217 1.03171 1.28070 1.03614 0.92690 1.25010 0.96910 0.95035 0.97358 1.69955 1.13113 1.32702 1.37421 0.86535 0.78875 0.78595 0.84015 1.19758 1.20939 1.20945 1.22369 0.90541 0.92730 0.95201 0.92476 0.92476 0.92891 0.91333 0.91719 0.91739 0.91808 0.93003 0.92466 0.92550 0.90595 0.90274 0.89719 0.90843 0.84156 0.83062 0.92764 0.92561 0.96375 0.96419 0.92942 0.91428 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.27 37.16 0.34 -0.77 16 2 C -0.11 -0.81 4.24 -26.73 -0.11 -0.92 16 3 C -0.07 -0.64 0.49 -153.11 -0.07 -0.72 16 4 C -0.11 -1.00 4.31 -26.73 -0.12 -1.12 16 5 C -0.15 -1.15 9.25 37.16 0.34 -0.80 16 6 C -0.13 -1.15 5.73 -25.33 -0.15 -1.30 16 7 C 0.10 1.15 6.60 -2.41 -0.02 1.13 16 8 N -0.62 -8.94 3.32 -169.31 -0.56 -9.50 16 9 C 0.55 9.75 7.16 -10.98 -0.08 9.67 16 10 O -0.54 -11.25 16.52 5.56 0.09 -11.16 16 11 C 0.08 1.42 2.64 -68.86 -0.18 1.24 16 12 H 0.09 1.61 6.98 -51.93 -0.36 1.25 16 13 N -0.83 -14.94 8.94 -5.65 -0.05 -14.99 16 14 C -0.14 -2.76 4.78 -26.73 -0.13 -2.88 16 15 C 0.03 0.61 4.74 -27.88 -0.13 0.48 16 16 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 17 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 20 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.11 1.37 5.02 -2.41 -0.01 1.35 16 25 H 0.06 0.45 7.12 -51.93 -0.37 0.08 16 26 H 0.06 0.40 6.91 -51.93 -0.36 0.04 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.46 6.61 -51.93 -0.34 0.11 16 29 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 30 H 0.06 0.58 6.79 -51.93 -0.35 0.23 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.42 6.72 -51.93 -0.35 0.07 16 34 H 0.06 0.38 6.69 -51.93 -0.35 0.03 16 35 H 0.08 0.69 6.73 -51.93 -0.35 0.34 16 36 H 0.08 0.60 7.72 -51.92 -0.40 0.19 16 37 H 0.08 1.02 6.74 -51.93 -0.35 0.67 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.35 6.28 8.58 -39.30 -0.34 5.95 16 40 H 0.35 6.30 7.55 -39.29 -0.30 6.00 16 41 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.10 7.83 -51.92 -0.41 0.69 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 45 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.07 0.77 7.80 -51.93 -0.40 0.36 16 47 H 0.08 1.05 7.60 -51.93 -0.39 0.66 16 LS Contribution 359.96 15.07 5.42 5.42 Total: -1.00 -31.18 359.96 -8.38 -39.56 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -8.28 Total: 7.49 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -0.72 Total: -7.80 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.12 Total: -49.77 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.18 -8.38 -39.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424145895.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.947 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds