Wall clock time and date at job start Tue Mar 31 2020 05:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47225 * 2 1 4 4 C 1.52995 * 109.46765 * 120.00336 * 2 1 3 5 5 C 1.52999 * 109.47524 * 59.99847 * 4 2 1 6 6 C 1.53005 * 109.47076 * 59.99652 * 5 4 2 7 7 C 1.52995 * 109.47228 * 300.00529 * 6 5 4 8 8 H 1.09007 * 109.46875 * 299.99554 * 7 6 5 9 9 N 1.46499 * 109.47022 * 179.97438 * 7 6 5 10 10 C 1.34784 * 119.99971 * 84.99732 * 9 7 6 11 11 O 1.21583 * 119.99855 * 359.72712 * 10 9 7 12 12 N 1.34771 * 119.99547 * 179.97438 * 10 9 7 13 13 C 1.46506 * 119.99515 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47042 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47346 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47235 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00370 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99790 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99822 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00076 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47136 * 90.00205 * 20 18 16 22 22 H 1.48503 * 109.47010 * 210.00270 * 20 18 16 23 23 H 1.48500 * 109.46954 * 330.00103 * 20 18 16 24 24 C 1.52999 * 109.47524 * 59.99745 * 7 6 5 25 25 H 1.08996 * 109.47106 * 300.00333 * 1 2 3 26 26 H 1.09006 * 109.46792 * 59.99956 * 1 2 3 27 27 H 1.08995 * 109.47206 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46786 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47227 * 299.99561 * 3 2 1 30 30 H 1.08996 * 109.47133 * 60.00324 * 3 2 1 31 31 H 1.09005 * 109.47314 * 299.99771 * 4 2 1 32 32 H 1.08996 * 109.47227 * 179.97438 * 4 2 1 33 33 H 1.09007 * 109.47200 * 299.99991 * 5 4 2 34 34 H 1.08996 * 109.47227 * 180.02562 * 5 4 2 35 35 H 1.09001 * 109.46819 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.46852 * 60.00557 * 6 5 4 37 37 H 0.96999 * 119.99984 * 264.99579 * 9 7 6 38 38 H 0.96999 * 120.00409 * 0.02562 * 12 10 9 39 39 H 1.08996 * 109.47564 * 300.00635 * 13 12 10 40 40 H 1.09000 * 109.46872 * 60.00432 * 13 12 10 41 41 H 1.08996 * 109.47407 * 300.00667 * 14 13 12 42 42 H 1.09000 * 109.46986 * 60.00438 * 14 13 12 43 43 H 1.09004 * 109.47108 * 300.00289 * 15 14 13 44 44 H 1.09000 * 109.46870 * 60.00183 * 15 14 13 45 45 H 0.97002 * 119.99998 * 180.02562 * 19 18 16 46 46 H 1.08996 * 109.46825 * 59.99807 * 24 7 6 47 47 H 1.08993 * 109.47204 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5299 -2.1638 1.2492 6 6 2.0399 -2.8850 -0.0001 7 6 1.5300 -2.1637 -1.2493 8 1 0.4399 -2.1637 -1.2493 9 7 2.0188 -2.8540 -2.4455 10 6 1.3424 -3.9110 -2.9373 11 8 0.3293 -4.2947 -2.3853 12 7 1.7919 -4.5456 -4.0380 13 6 1.0569 -5.6949 -4.5723 14 6 1.7746 -6.2265 -5.8146 15 6 1.0069 -7.4263 -6.3729 16 6 1.7141 -7.9502 -7.5961 17 1 2.6204 -7.4748 -7.9411 18 6 1.2036 -9.0360 -8.2755 19 7 1.8211 -9.4936 -9.3427 20 14 -0.3643 -9.8580 -7.6793 21 1 -1.5366 -9.2162 -8.3265 22 1 -0.3320 -11.3002 -8.0320 23 1 -0.4705 -9.7111 -6.2054 24 6 2.0400 -0.7213 -1.2493 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6766 -0.2075 2.1392 32 1 3.1299 -0.7218 1.2490 33 1 0.4398 -2.1638 1.2492 34 1 1.8928 -2.6775 2.1394 35 1 1.6769 -3.9128 0.0001 36 1 3.1298 -2.8851 -0.0001 37 1 2.8292 -2.5503 -2.8835 38 1 2.6023 -4.2420 -4.4760 39 1 1.0098 -6.4792 -3.8168 40 1 0.0461 -5.3872 -4.8400 41 1 1.8222 -5.4424 -6.5702 42 1 2.7853 -6.5343 -5.5464 43 1 0.9590 -8.2106 -5.6174 44 1 -0.0037 -7.1180 -6.6412 45 1 1.4618 -10.2572 -9.8209 46 1 3.1300 -0.7213 -1.2493 47 1 1.6764 -0.2073 -2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443103141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:44 Heat of formation + Delta-G solvation = -73.754073 kcal Electronic energy + Delta-G solvation = -22289.166246 eV Core-core repulsion = 19084.133914 eV Total energy + Delta-G solvation = -3205.032332 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.48622 -39.14747 -35.68593 -34.66324 -33.32718 -32.75683 -31.43149 -29.64593 -27.68242 -26.92891 -26.66419 -23.27840 -22.44004 -21.47771 -20.74321 -20.24965 -18.89488 -17.86893 -16.87680 -16.38990 -15.56545 -15.29782 -15.07576 -14.71141 -14.55210 -14.29474 -14.12787 -13.75913 -13.63173 -13.47014 -12.88180 -12.67036 -12.42310 -12.24411 -12.03896 -11.88996 -11.79886 -11.70073 -11.41497 -11.27449 -11.04516 -10.87679 -10.83653 -10.52168 -10.32978 -10.21327 -9.97324 -9.79296 -9.64893 -9.21316 -9.15869 -8.63256 -8.54225 -6.05229 -4.03772 2.79976 3.32647 3.36283 3.40063 3.44915 4.24451 4.29189 4.35044 4.45771 4.53975 4.79543 4.81982 5.03217 5.03421 5.15171 5.17106 5.29005 5.32194 5.33620 5.36593 5.50701 5.57287 5.60177 5.62416 5.71924 5.72644 5.73602 5.82900 5.92004 5.94352 6.03928 6.06608 6.07283 6.23643 6.42038 6.49497 6.53633 6.73126 6.85539 7.06031 7.25470 7.38717 7.77194 8.15326 8.51459 8.75441 8.98665 9.57148 11.07998 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042579 B = 0.002469 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.448646 B =11339.186175 C =11533.699893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.060 4.060 3 C -0.141 4.141 4 C -0.109 4.109 5 C -0.119 4.119 6 C -0.130 4.130 7 C 0.163 3.837 8 H 0.090 0.910 9 N -0.748 5.748 10 C 0.701 3.299 11 O -0.594 6.594 12 N -0.743 5.743 13 C 0.133 3.867 14 C -0.113 4.113 15 C -0.011 4.011 16 C -0.521 4.521 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 C -0.115 4.115 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.393 0.607 38 H 0.395 0.605 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.019 0.981 44 H 0.015 0.985 45 H 0.263 0.737 46 H 0.067 0.933 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.994 21.925 21.236 30.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.169 4.169 7 C 0.058 3.942 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.400 3.600 11 O -0.472 6.472 12 N -0.397 5.397 13 C 0.010 3.990 14 C -0.151 4.151 15 C -0.049 4.049 16 C -0.559 4.559 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.154 4.154 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.226 0.774 38 H 0.228 0.772 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.037 0.963 44 H 0.033 0.967 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.019 21.399 21.587 30.413 hybrid contribution 0.056 -0.279 -0.327 0.433 sum 1.075 21.120 21.261 29.987 Atomic orbital electron populations 1.22024 0.94400 1.02501 1.01723 1.20472 0.95938 0.95010 0.94648 1.21860 1.00919 0.95195 1.01847 1.21631 1.00536 0.95478 0.97018 1.21548 1.01361 0.95251 0.97565 1.21952 1.00686 1.00178 0.94106 1.20825 1.00041 0.90075 0.83255 0.89191 1.45233 1.30094 1.33541 1.31432 1.16026 0.83218 0.79940 0.80767 1.90903 1.26258 1.68157 1.61928 1.45344 1.30473 1.34555 1.29334 1.21496 0.95452 0.85951 0.96124 1.21701 0.99623 0.99456 0.94283 1.19502 0.95745 0.92979 0.96688 1.21100 1.11278 1.14124 1.09426 0.91033 1.25034 0.97175 0.96702 0.94628 1.69914 1.40049 1.25605 1.18679 0.86771 0.83908 0.78611 0.79991 1.20247 1.21390 1.18851 1.21871 1.00940 0.94395 0.98152 0.92639 0.92634 0.91706 0.92664 0.92584 0.92550 0.91898 0.91935 0.91401 0.91852 0.91270 0.92061 0.77375 0.77224 0.92042 0.92045 0.92194 0.92165 0.96288 0.96719 0.92719 0.91449 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 7.78 37.16 0.29 -0.77 16 2 C -0.06 -0.39 0.77 -154.51 -0.12 -0.51 16 3 C -0.14 -0.78 8.47 37.16 0.31 -0.47 16 4 C -0.11 -0.70 4.73 -26.73 -0.13 -0.83 16 5 C -0.12 -0.93 5.65 -26.73 -0.15 -1.08 16 6 C -0.13 -1.24 5.49 -26.73 -0.15 -1.39 16 7 C 0.16 1.60 2.18 -67.93 -0.15 1.45 16 8 H 0.09 1.09 5.87 -51.92 -0.30 0.78 16 9 N -0.75 -8.00 5.08 -58.68 -0.30 -8.30 16 10 C 0.70 10.48 8.53 -86.92 -0.74 9.74 16 11 O -0.59 -11.36 16.01 5.29 0.08 -11.28 16 12 N -0.74 -10.50 5.56 -65.22 -0.36 -10.87 16 13 C 0.13 2.27 5.67 -4.04 -0.02 2.25 16 14 C -0.11 -2.12 5.27 -26.73 -0.14 -2.27 16 15 C -0.01 -0.26 4.04 -27.89 -0.11 -0.38 16 16 C -0.52 -14.77 9.66 -34.44 -0.33 -15.11 16 17 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 18 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 19 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 20 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 24 C -0.12 -0.83 4.20 -26.73 -0.11 -0.94 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.53 4.81 -51.93 -0.25 0.28 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.56 6.43 -51.92 -0.33 0.23 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.39 3.10 8.62 -40.82 -0.35 2.75 16 38 H 0.39 4.45 8.49 -40.82 -0.35 4.10 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 44 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 362.29 15.07 5.46 5.46 Total: -1.00 -33.00 362.29 -9.36 -42.37 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -8.70 Total: 0.96 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -1.65 Total: -8.46 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.11 Total: -46.27 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.00 -9.36 -42.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443103141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.389 kcal (2) G-P(sol) polarization free energy of solvation -33.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds