Wall clock time and date at job start Tue Mar 31 2020 05:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47225 * 2 1 4 4 C 1.52995 * 109.46765 * 120.00336 * 2 1 3 5 5 C 1.52999 * 109.47524 * 59.99847 * 4 2 1 6 6 C 1.53005 * 109.47076 * 59.99652 * 5 4 2 7 7 C 1.52995 * 109.47228 * 300.00529 * 6 5 4 8 8 H 1.09007 * 109.46875 * 299.99554 * 7 6 5 9 9 N 1.46499 * 109.47022 * 179.97438 * 7 6 5 10 10 C 1.34784 * 119.99971 * 84.99732 * 9 7 6 11 11 O 1.21583 * 119.99855 * 359.72712 * 10 9 7 12 12 N 1.34771 * 119.99547 * 179.97438 * 10 9 7 13 13 C 1.46506 * 119.99515 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47042 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47346 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47235 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00370 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99790 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99822 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00076 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47136 * 90.00205 * 20 18 16 22 22 H 1.48503 * 109.47010 * 210.00270 * 20 18 16 23 23 H 1.48500 * 109.46954 * 330.00103 * 20 18 16 24 24 C 1.52999 * 109.47524 * 59.99745 * 7 6 5 25 25 H 1.08996 * 109.47106 * 300.00333 * 1 2 3 26 26 H 1.09006 * 109.46792 * 59.99956 * 1 2 3 27 27 H 1.08995 * 109.47206 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46786 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47227 * 299.99561 * 3 2 1 30 30 H 1.08996 * 109.47133 * 60.00324 * 3 2 1 31 31 H 1.09005 * 109.47314 * 299.99771 * 4 2 1 32 32 H 1.08996 * 109.47227 * 179.97438 * 4 2 1 33 33 H 1.09007 * 109.47200 * 299.99991 * 5 4 2 34 34 H 1.08996 * 109.47227 * 180.02562 * 5 4 2 35 35 H 1.09001 * 109.46819 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.46852 * 60.00557 * 6 5 4 37 37 H 0.96999 * 119.99984 * 264.99579 * 9 7 6 38 38 H 0.96999 * 120.00409 * 0.02562 * 12 10 9 39 39 H 1.08996 * 109.47564 * 300.00635 * 13 12 10 40 40 H 1.09000 * 109.46872 * 60.00432 * 13 12 10 41 41 H 1.08996 * 109.47407 * 300.00667 * 14 13 12 42 42 H 1.09000 * 109.46986 * 60.00438 * 14 13 12 43 43 H 1.09004 * 109.47108 * 300.00289 * 15 14 13 44 44 H 1.09000 * 109.46870 * 60.00183 * 15 14 13 45 45 H 0.97002 * 119.99998 * 180.02562 * 19 18 16 46 46 H 1.08996 * 109.46825 * 59.99807 * 24 7 6 47 47 H 1.08993 * 109.47204 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5299 -2.1638 1.2492 6 6 2.0399 -2.8850 -0.0001 7 6 1.5300 -2.1637 -1.2493 8 1 0.4399 -2.1637 -1.2493 9 7 2.0188 -2.8540 -2.4455 10 6 1.3424 -3.9110 -2.9373 11 8 0.3293 -4.2947 -2.3853 12 7 1.7919 -4.5456 -4.0380 13 6 1.0569 -5.6949 -4.5723 14 6 1.7746 -6.2265 -5.8146 15 6 1.0069 -7.4263 -6.3729 16 6 1.7141 -7.9502 -7.5961 17 1 2.6204 -7.4748 -7.9411 18 6 1.2036 -9.0360 -8.2755 19 7 1.8211 -9.4936 -9.3427 20 14 -0.3643 -9.8580 -7.6793 21 1 -1.5366 -9.2162 -8.3265 22 1 -0.3320 -11.3002 -8.0320 23 1 -0.4705 -9.7111 -6.2054 24 6 2.0400 -0.7213 -1.2493 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6766 -0.2075 2.1392 32 1 3.1299 -0.7218 1.2490 33 1 0.4398 -2.1638 1.2492 34 1 1.8928 -2.6775 2.1394 35 1 1.6769 -3.9128 0.0001 36 1 3.1298 -2.8851 -0.0001 37 1 2.8292 -2.5503 -2.8835 38 1 2.6023 -4.2420 -4.4760 39 1 1.0098 -6.4792 -3.8168 40 1 0.0461 -5.3872 -4.8400 41 1 1.8222 -5.4424 -6.5702 42 1 2.7853 -6.5343 -5.5464 43 1 0.9590 -8.2106 -5.6174 44 1 -0.0037 -7.1180 -6.6412 45 1 1.4618 -10.2572 -9.8209 46 1 3.1300 -0.7213 -1.2493 47 1 1.6764 -0.2073 -2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443103141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:43 Heat of formation + Delta-G solvation = -95.330589 kcal Electronic energy + Delta-G solvation = -22290.101874 eV Core-core repulsion = 19084.133914 eV Total energy + Delta-G solvation = -3205.967960 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.40827 -40.05396 -37.07991 -35.69656 -35.13503 -33.64599 -33.07035 -30.59076 -28.60313 -28.19619 -27.24137 -24.80195 -23.31199 -22.40807 -22.18152 -21.51446 -19.76217 -18.99020 -18.69961 -17.50012 -16.80333 -16.42656 -16.09714 -15.77072 -15.56456 -15.49516 -15.22872 -14.88716 -14.76201 -14.42456 -14.17974 -13.79981 -13.65139 -13.48586 -12.93156 -12.76363 -12.73179 -12.69429 -12.42753 -12.32364 -12.10645 -11.91120 -11.85520 -11.77933 -11.59677 -11.53827 -11.32613 -11.15947 -11.06575 -10.95823 -10.75941 -10.30375 -9.72738 -8.29256 -6.32922 1.37074 1.38696 1.50730 1.73293 2.17082 2.36624 3.06466 3.30627 3.66643 3.76317 3.93037 4.10925 4.14221 4.18574 4.22626 4.37999 4.43265 4.48074 4.51779 4.56734 4.72895 4.80660 4.84593 4.90694 4.91064 4.97680 5.04457 5.07119 5.08974 5.12863 5.15593 5.22207 5.26556 5.37170 5.42492 5.44796 5.50068 5.53941 5.56628 5.62333 5.64617 5.66657 6.05701 6.27787 6.74915 7.13916 7.31829 7.61297 8.87076 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042579 B = 0.002469 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.448646 B =11339.186175 C =11533.699893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.059 4.059 3 C -0.137 4.137 4 C -0.104 4.104 5 C -0.117 4.117 6 C -0.126 4.126 7 C 0.162 3.838 8 H 0.064 0.936 9 N -0.730 5.730 10 C 0.697 3.303 11 O -0.639 6.639 12 N -0.734 5.734 13 C 0.147 3.853 14 C -0.098 4.098 15 C -0.012 4.012 16 C -0.530 4.530 17 H 0.038 0.962 18 C 0.004 3.996 19 N -0.950 5.950 20 Si 0.947 3.053 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.248 1.248 24 C -0.108 4.108 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.036 0.964 36 H 0.073 0.927 37 H 0.410 0.590 38 H 0.411 0.589 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.020 0.980 44 H 0.019 0.981 45 H 0.266 0.734 46 H 0.084 0.916 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.174 23.553 22.822 32.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.059 4.059 3 C -0.195 4.195 4 C -0.142 4.142 5 C -0.155 4.155 6 C -0.165 4.165 7 C 0.057 3.943 8 H 0.082 0.918 9 N -0.386 5.386 10 C 0.397 3.603 11 O -0.521 6.521 12 N -0.389 5.389 13 C 0.022 3.978 14 C -0.136 4.136 15 C -0.050 4.050 16 C -0.568 4.568 17 H 0.056 0.944 18 C -0.193 4.193 19 N -0.591 5.591 20 Si 0.771 3.229 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.172 1.172 24 C -0.146 4.146 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.246 0.754 38 H 0.247 0.753 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.039 0.961 44 H 0.038 0.962 45 H 0.075 0.925 46 H 0.102 0.898 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.252 23.081 23.180 32.735 hybrid contribution 0.066 -0.743 -0.835 1.120 sum 1.318 22.339 22.344 31.623 Atomic orbital electron populations 1.22021 0.95129 1.01487 1.02028 1.20480 0.95339 0.95797 0.94302 1.21824 1.01386 0.94090 1.02172 1.21609 1.01041 0.94176 0.97347 1.21532 1.00810 0.96349 0.96833 1.21890 1.01224 0.98466 0.94886 1.20910 0.98764 0.91752 0.82861 0.91771 1.45113 1.30075 1.32012 1.31357 1.16191 0.82937 0.80566 0.80606 1.90876 1.28389 1.69580 1.63206 1.45061 1.30814 1.33774 1.29282 1.21120 0.95057 0.86619 0.94957 1.21464 0.99279 0.97848 0.95022 1.19468 0.96014 0.94742 0.94822 1.21458 1.10438 1.13931 1.10932 0.94354 1.25984 1.00920 0.97614 0.94760 1.70056 1.42166 1.26547 1.20301 0.85702 0.79472 0.77480 0.80286 1.19238 1.20996 1.17203 1.21836 1.01841 0.92178 0.98701 0.91811 0.92876 0.93379 0.91864 0.92584 0.91986 0.90912 0.90970 0.92380 0.91228 0.94544 0.90873 0.75361 0.75333 0.92961 0.92831 0.91673 0.91720 0.96143 0.96219 0.92513 0.89767 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 7.78 71.98 0.56 -1.41 16 2 C -0.06 -0.64 0.77 -52.18 -0.04 -0.68 16 3 C -0.14 -1.14 8.47 71.98 0.61 -0.53 16 4 C -0.10 -1.10 4.73 30.59 0.14 -0.95 16 5 C -0.12 -1.71 5.65 30.60 0.17 -1.53 16 6 C -0.13 -2.32 5.49 30.59 0.17 -2.15 16 7 C 0.16 3.04 2.18 44.99 0.10 3.14 16 8 H 0.06 1.58 5.87 -2.38 -0.01 1.57 16 9 N -0.73 -14.66 5.08 -457.81 -2.33 -16.99 16 10 C 0.70 20.38 8.53 179.05 1.53 21.91 16 11 O -0.64 -24.68 16.01 -3.98 -0.06 -24.75 16 12 N -0.73 -19.77 5.56 -478.53 -2.66 -22.43 16 13 C 0.15 4.86 5.67 86.38 0.49 5.35 16 14 C -0.10 -3.59 5.27 30.59 0.16 -3.43 16 15 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 16 C -0.53 -30.26 9.66 25.60 0.25 -30.01 16 17 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 18 C 0.00 0.24 5.47 84.66 0.46 0.70 16 19 N -0.95 -59.61 13.96 21.45 0.30 -59.31 16 20 Si 0.95 44.81 27.47 68.60 1.88 46.69 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 22 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 23 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 24 C -0.11 -1.32 4.20 30.60 0.13 -1.19 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.05 0.80 4.81 -2.39 -0.01 0.79 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.96 6.43 -2.38 -0.02 0.94 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.41 5.49 8.62 -92.71 -0.80 4.69 16 38 H 0.41 8.40 8.49 -92.71 -0.79 7.61 16 39 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.02 0.94 7.20 -2.38 -0.02 0.92 16 44 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 45 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 46 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -72.28 362.29 1.28 -71.00 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -0.70 Total: 17.03 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 4.85 Total: -11.25 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -4.69 Total: -98.72 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.06 Total: -24.75 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Total: -72.28 1.28 -71.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443103141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.329 kcal (2) G-P(sol) polarization free energy of solvation -72.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds