Wall clock time and date at job start Tue Mar 31 2020 05:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 110.01519 * 2 1 4 4 C 1.54261 * 110.03564 * 238.55362 * 2 1 3 5 5 C 1.54891 * 104.19992 * 264.33051 * 4 2 1 6 6 C 1.54898 * 102.74465 * 322.05386 * 5 4 2 7 7 C 1.53881 * 110.02880 * 121.39014 * 2 1 3 8 8 H 1.09003 * 110.03390 * 359.94728 * 7 2 1 9 9 C 1.53005 * 110.02868 * 238.57210 * 7 2 1 10 10 N 1.46503 * 109.46592 * 175.00259 * 9 7 2 11 11 C 1.34783 * 119.99449 * 179.97438 * 10 9 7 12 12 O 1.21590 * 119.99935 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99768 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99872 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46840 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47291 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99920 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46678 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47258 * 119.99423 * 21 19 17 24 24 H 1.48493 * 109.47346 * 240.00028 * 21 19 17 25 25 H 1.08996 * 109.47626 * 298.61037 * 1 2 3 26 26 H 1.09004 * 109.46711 * 58.61074 * 1 2 3 27 27 H 1.09008 * 109.46890 * 178.61042 * 1 2 3 28 28 H 1.09009 * 109.46969 * 181.38705 * 3 2 1 29 29 H 1.08996 * 109.47218 * 301.38724 * 3 2 1 30 30 H 1.09002 * 109.47557 * 61.38934 * 3 2 1 31 31 H 1.09006 * 110.48320 * 23.00580 * 4 2 1 32 32 H 1.09003 * 110.48742 * 145.51263 * 4 2 1 33 33 H 1.08996 * 110.75802 * 80.36972 * 5 4 2 34 34 H 1.09000 * 110.75528 * 203.56011 * 5 4 2 35 35 H 1.08995 * 110.48830 * 279.26867 * 6 5 4 36 36 H 1.08995 * 110.48707 * 156.61966 * 6 5 4 37 37 H 1.09000 * 109.47248 * 55.00266 * 9 7 2 38 38 H 1.08996 * 109.46721 * 294.99829 * 9 7 2 39 39 H 0.96992 * 120.00655 * 359.97438 * 10 9 7 40 40 H 0.97000 * 119.99708 * 359.97438 * 13 11 10 41 41 H 1.09002 * 109.47391 * 59.99686 * 14 13 11 42 42 H 1.09001 * 109.46813 * 299.99742 * 14 13 11 43 43 H 1.09001 * 109.47194 * 299.99493 * 15 14 13 44 44 H 1.08992 * 109.47399 * 59.99666 * 15 14 13 45 45 H 1.09001 * 109.47109 * 299.99380 * 16 15 14 46 46 H 1.09002 * 109.47508 * 59.99571 * 16 15 14 47 47 H 0.97000 * 119.99425 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4375 0.0000 4 6 2.0585 -0.7561 -1.2364 5 6 2.3281 -2.1906 -0.7180 6 6 2.8875 -1.9404 0.7046 7 6 2.0571 -0.7530 1.2341 8 1 1.2228 -1.1177 1.8335 9 6 2.9408 0.1713 2.0742 10 7 3.3382 -0.5182 3.3042 11 6 4.1245 0.1066 4.2030 12 8 4.5044 1.2424 3.9927 13 7 4.4898 -0.5275 5.3348 14 6 5.3440 0.1518 6.3120 15 6 5.6076 -0.7819 7.4951 16 6 6.4993 -0.0721 8.5160 17 6 6.7585 -0.9914 9.6816 18 1 6.3297 -1.9827 9.6933 19 6 7.5429 -0.5672 10.7331 20 7 8.0654 0.6396 10.7186 21 14 7.8648 -1.7070 12.1776 22 1 7.1690 -2.9996 11.9528 23 1 9.3250 -1.9459 12.3040 24 1 7.3557 -1.0818 13.4246 25 1 -0.3634 0.4921 0.9021 26 1 -0.3633 0.5353 -0.8773 27 1 -0.3633 -1.0274 -0.0249 28 1 3.1434 1.4273 -0.0249 29 1 1.6752 1.9621 -0.8772 30 1 1.7157 1.9474 0.9022 31 1 1.3062 -0.7706 -2.0251 32 1 2.9799 -0.2994 -1.5978 33 1 1.4031 -2.7655 -0.6738 34 1 3.0652 -2.6949 -1.3428 35 1 3.9440 -1.6763 0.6581 36 1 2.7401 -2.8190 1.3324 37 1 2.3850 1.0742 2.3271 38 1 3.8304 0.4398 1.5045 39 1 3.0355 -1.4243 3.4717 40 1 4.1864 -1.4334 5.5026 41 1 4.8454 1.0545 6.6651 42 1 6.2908 0.4195 5.8429 43 1 4.6610 -1.0499 7.9643 44 1 6.1064 -1.6842 7.1417 45 1 7.4460 0.1963 8.0471 46 1 6.0001 0.8301 8.8693 47 1 8.6176 0.9379 11.4582 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454459956.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:01 Heat of formation + Delta-G solvation = -72.598024 kcal Electronic energy + Delta-G solvation = -21999.217653 eV Core-core repulsion = 18794.235451 eV Total energy + Delta-G solvation = -3204.982202 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.31823 -39.26868 -35.53351 -34.47986 -33.25718 -32.58543 -31.28997 -29.85775 -27.82378 -26.68276 -25.31367 -23.86602 -22.78560 -21.06667 -20.71611 -20.32023 -18.83823 -17.67321 -16.68221 -16.23162 -15.73244 -15.41229 -15.27638 -14.60487 -14.51547 -14.21861 -14.03164 -13.79045 -13.70362 -13.34326 -13.17034 -12.54900 -12.27688 -12.18971 -11.86802 -11.77266 -11.67049 -11.40147 -11.08318 -10.92488 -10.90777 -10.85545 -10.76737 -10.72298 -10.69580 -10.55052 -10.03856 -9.83592 -9.41806 -9.10205 -9.09208 -8.52707 -8.35984 -6.00453 -4.03353 2.89776 3.30769 3.38182 3.41733 3.44602 4.11297 4.17574 4.26679 4.44316 4.53048 4.81986 4.93877 4.94467 4.97404 5.11559 5.16843 5.19848 5.35278 5.35337 5.45772 5.50029 5.55458 5.63040 5.65673 5.68835 5.75308 5.77460 5.80524 5.85295 5.93911 6.02472 6.04740 6.14257 6.22202 6.54575 6.57893 6.65822 6.85570 7.05692 7.13911 7.66100 7.79021 7.98878 8.22176 8.39861 8.82679 9.03649 9.60703 11.10909 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042700 B = 0.002267 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.576125 B =12350.479274 C =12667.509262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.060 4.060 3 C -0.149 4.149 4 C -0.116 4.116 5 C -0.125 4.125 6 C -0.121 4.121 7 C -0.097 4.097 8 H 0.079 0.921 9 C 0.144 3.856 10 N -0.752 5.752 11 C 0.699 3.301 12 O -0.595 6.595 13 N -0.743 5.743 14 C 0.135 3.865 15 C -0.120 4.120 16 C 0.023 3.977 17 C -0.521 4.521 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.392 0.608 40 H 0.393 0.607 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.559 -5.207 -24.615 29.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.061 4.061 3 C -0.206 4.206 4 C -0.153 4.153 5 C -0.162 4.162 6 C -0.158 4.158 7 C -0.115 4.115 8 H 0.097 0.903 9 C 0.020 3.980 10 N -0.408 5.408 11 C 0.398 3.602 12 O -0.473 6.473 13 N -0.397 5.397 14 C 0.012 3.988 15 C -0.158 4.158 16 C -0.015 4.015 17 C -0.559 4.559 18 H 0.074 0.926 19 C -0.146 4.146 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.226 0.774 40 H 0.226 0.774 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.077 -3.993 -24.693 29.206 hybrid contribution -0.052 -1.420 1.060 1.773 sum -15.129 -5.414 -23.633 28.578 Atomic orbital electron populations 1.21915 0.94156 1.01657 1.01838 1.21109 0.95529 0.95380 0.94062 1.22074 1.01467 0.95109 1.01982 1.22500 1.00927 0.95207 0.96682 1.22468 1.00730 0.96758 0.96249 1.22467 0.99795 0.97383 0.96198 1.22120 0.97971 0.95468 0.95981 0.90256 1.21483 0.98072 0.94750 0.83653 1.45184 1.55378 1.18584 1.21703 1.16038 0.79234 0.84667 0.80217 1.90914 1.60407 1.17635 1.78331 1.45387 1.55307 1.18544 1.20476 1.21494 0.93126 0.96025 0.88166 1.21883 1.00868 0.98184 0.94860 1.19036 0.94226 0.95803 0.92387 1.21245 1.30618 1.00360 1.03692 0.92616 1.25041 0.95879 0.95169 0.98473 1.69983 1.33765 1.17514 1.32010 0.86525 0.77951 0.80922 0.82519 1.19781 1.21010 1.21016 0.92531 0.92609 0.92623 0.91963 0.92736 0.91958 0.91654 0.91379 0.91620 0.91618 0.91132 0.91649 0.91451 0.91564 0.77437 0.77405 0.92022 0.92024 0.92808 0.92799 0.96235 0.96239 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 8.14 37.16 0.30 -0.53 16 2 C -0.06 -0.40 0.94 -153.39 -0.14 -0.54 16 3 C -0.15 -1.10 7.20 37.15 0.27 -0.83 16 4 C -0.12 -0.71 5.90 -25.07 -0.15 -0.86 16 5 C -0.12 -0.74 6.91 -24.73 -0.17 -0.91 16 6 C -0.12 -0.82 6.08 -25.07 -0.15 -0.97 16 7 C -0.10 -0.69 2.62 -89.50 -0.23 -0.93 16 8 H 0.08 0.55 7.67 -51.93 -0.40 0.15 16 9 C 0.14 1.46 3.78 -4.04 -0.02 1.44 16 10 N -0.75 -8.38 5.41 -65.22 -0.35 -8.74 16 11 C 0.70 11.03 8.57 -86.91 -0.74 10.28 16 12 O -0.59 -12.05 16.34 5.29 0.09 -11.96 16 13 N -0.74 -11.11 5.56 -65.22 -0.36 -11.47 16 14 C 0.14 2.47 5.67 -4.04 -0.02 2.45 16 15 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 18 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 21 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.31 8.14 -51.92 -0.42 -0.11 16 28 H 0.06 0.50 6.86 -51.92 -0.36 0.14 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.50 6.62 -51.93 -0.34 0.15 16 31 H 0.06 0.36 7.84 -51.93 -0.41 -0.04 16 32 H 0.07 0.44 7.84 -51.93 -0.41 0.03 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.56 7.76 -51.93 -0.40 0.15 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.76 6.42 -51.93 -0.33 0.42 16 38 H 0.07 0.75 6.91 -51.93 -0.36 0.39 16 39 H 0.39 3.27 8.37 -40.82 -0.34 2.92 16 40 H 0.39 4.67 8.49 -40.82 -0.35 4.32 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 368.74 15.07 5.56 5.56 Total: -1.00 -32.92 368.74 -9.84 -42.77 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -8.73 Total: 0.47 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -1.75 Total: -6.92 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.02 Total: -46.49 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.96 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.92 -9.84 -42.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454459956.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.833 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds