Wall clock time and date at job start Tue Mar 31 2020 05:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46939 * 2 1 4 4 C 1.53008 * 109.47097 * 119.99690 * 2 1 3 5 5 C 1.53002 * 109.46815 * 175.00210 * 4 2 1 6 6 C 1.53008 * 109.46815 * 179.97438 * 5 4 2 7 7 C 1.52993 * 109.46901 * 180.02562 * 6 5 4 8 8 C 1.50707 * 109.46827 * 179.97438 * 7 6 5 9 9 O 1.21275 * 120.00197 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99596 * 180.02562 * 8 7 6 11 11 C 1.46969 * 120.59184 * 179.97438 * 10 8 7 12 12 C 1.53365 * 108.63823 * 235.24762 * 11 10 8 13 13 N 1.46971 * 108.63406 * 310.57818 * 12 11 10 14 14 C 1.36933 * 120.58954 * 235.20080 * 13 12 11 15 15 H 1.08004 * 119.99676 * 151.84704 * 14 13 12 16 16 C 1.38804 * 120.00274 * 331.57456 * 14 13 12 17 17 N 1.31613 * 120.00257 * 342.82344 * 16 14 13 18 18 Si 1.86809 * 120.00042 * 162.81945 * 16 14 13 19 19 H 1.48504 * 109.46931 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46750 * 119.99895 * 18 16 14 21 21 H 1.48498 * 109.47076 * 239.99975 * 18 16 14 22 22 C 1.46964 * 118.81046 * 55.47559 * 13 12 11 23 23 C 1.46965 * 120.59893 * 0.02562 * 10 8 7 24 24 H 1.08996 * 109.47196 * 299.99783 * 1 2 3 25 25 H 1.09000 * 109.47227 * 60.00180 * 1 2 3 26 26 H 1.09007 * 109.46899 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47789 * 239.99768 * 2 1 3 28 28 H 1.09000 * 109.47663 * 59.99801 * 3 2 1 29 29 H 1.09000 * 109.47059 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47152 * 299.99415 * 3 2 1 31 31 H 1.08997 * 109.47176 * 55.00383 * 4 2 1 32 32 H 1.09000 * 109.46630 * 295.00271 * 4 2 1 33 33 H 1.09005 * 109.47049 * 60.00417 * 5 4 2 34 34 H 1.08997 * 109.46957 * 299.99908 * 5 4 2 35 35 H 1.09000 * 109.47064 * 59.99652 * 6 5 4 36 36 H 1.09000 * 109.46630 * 300.00061 * 6 5 4 37 37 H 1.09008 * 109.47542 * 60.00199 * 7 6 5 38 38 H 1.08996 * 109.47528 * 300.00227 * 7 6 5 39 39 H 1.09001 * 109.60759 * 115.50025 * 11 10 8 40 40 H 1.08998 * 109.74755 * 355.07824 * 11 10 8 41 41 H 1.08993 * 109.61301 * 190.83327 * 12 11 10 42 42 H 1.09004 * 109.75220 * 70.40370 * 12 11 10 43 43 H 0.97004 * 120.00510 * 180.02562 * 17 16 14 44 44 H 1.08995 * 109.60931 * 64.27031 * 22 13 12 45 45 H 1.09004 * 109.60392 * 184.78099 * 22 13 12 46 46 H 1.09002 * 109.60509 * 244.49992 * 23 10 8 47 47 H 1.09000 * 109.60856 * 4.83277 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8309 1.1880 6 6 4.0749 -1.5516 2.4377 7 6 5.5997 -1.6607 2.3767 8 6 6.1021 -2.3700 3.6079 9 8 5.3179 -2.7502 4.4512 10 7 7.4232 -2.5808 3.7721 11 6 7.9275 -3.2705 4.9679 12 6 8.9680 -2.3731 5.6491 13 7 9.9300 -1.9169 4.6359 14 6 11.2722 -2.1303 4.8034 15 1 11.9150 -2.2286 3.9411 16 6 11.8074 -2.2147 6.0813 17 7 11.1241 -1.7646 7.1121 18 14 13.4978 -2.9674 6.3381 19 1 14.0540 -3.3936 5.0288 20 1 14.3993 -1.9609 6.9544 21 1 13.3841 -4.1453 7.2353 22 6 9.4261 -1.2222 3.4429 23 6 8.3852 -2.1241 2.7593 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6766 1.9564 0.8899 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6054 -1.7198 1.2953 32 1 1.7515 -0.1582 2.1370 33 1 3.9994 0.1677 1.1421 34 1 3.8532 -1.3939 0.3003 35 1 3.6403 -2.5501 2.4841 36 1 3.7865 -0.9882 3.3251 37 1 6.0340 -0.6620 2.3306 38 1 5.8885 -2.2238 1.4892 39 1 8.3913 -4.2134 4.6780 40 1 7.1046 -3.4640 5.6560 41 1 9.4901 -2.9389 6.4207 42 1 8.4739 -1.5117 6.0984 43 1 11.4982 -1.8233 8.0052 44 1 8.9616 -0.2809 3.7366 45 1 10.2509 -1.0278 2.7572 46 1 8.8816 -2.9852 2.3119 47 1 7.8627 -1.5606 1.9863 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457582450.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:38 Heat of formation + Delta-G solvation = -44.352163 kcal Electronic energy + Delta-G solvation = -22491.496419 eV Core-core repulsion = 19287.739050 eV Total energy + Delta-G solvation = -3203.757369 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.62976 -37.48603 -36.75081 -34.04037 -33.85581 -31.18284 -30.65371 -29.22899 -27.43111 -26.92182 -24.82116 -23.52157 -22.68174 -21.33496 -20.38809 -20.04399 -18.44368 -17.06463 -16.13129 -16.03199 -15.36820 -15.22665 -14.81038 -14.46735 -14.34845 -13.82679 -13.67358 -13.52194 -13.26453 -13.06824 -12.86171 -12.49909 -12.42223 -12.19464 -11.87224 -11.73233 -11.54152 -11.34514 -11.21848 -10.88605 -10.85386 -10.78472 -10.71426 -10.60539 -10.54401 -10.47332 -10.23961 -9.96787 -9.83565 -9.27390 -8.59918 -8.20555 -6.71854 -5.85563 -3.31163 3.05390 3.33291 3.41070 3.42976 3.50682 4.42848 4.48105 4.64004 4.68763 4.86664 4.96113 5.05317 5.23224 5.28516 5.32150 5.33527 5.38823 5.45488 5.53119 5.59784 5.61675 5.67405 5.74686 5.76704 5.79803 5.82294 5.88959 5.91680 5.97895 6.07060 6.15245 6.17438 6.28843 6.35974 6.37167 6.40499 6.51346 6.69825 6.89314 7.27096 7.55060 7.71859 7.96801 8.35497 8.63311 9.11205 9.74040 10.30944 11.21772 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043110 B = 0.002727 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.344189 B =10265.986289 C =10544.389574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.150 4.150 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.103 4.103 7 C -0.138 4.138 8 C 0.506 3.494 9 O -0.559 6.559 10 N -0.599 5.599 11 C 0.087 3.913 12 C 0.158 3.842 13 N -0.592 5.592 14 C -0.257 4.257 15 H 0.068 0.932 16 C 0.003 3.997 17 N -0.900 5.900 18 Si 0.904 3.096 19 H -0.277 1.277 20 H -0.290 1.290 21 H -0.288 1.288 22 C 0.130 3.870 23 C 0.089 3.911 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.023 0.977 43 H 0.255 0.745 44 H 0.023 0.977 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.359 2.608 -14.278 21.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.207 4.207 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.141 4.141 7 C -0.178 4.178 8 C 0.294 3.706 9 O -0.438 6.438 10 N -0.331 5.331 11 C -0.037 4.037 12 C 0.032 3.968 13 N -0.315 5.315 14 C -0.386 4.386 15 H 0.086 0.914 16 C -0.196 4.196 17 N -0.544 5.544 18 Si 0.734 3.266 19 H -0.202 1.202 20 H -0.217 1.217 21 H -0.215 1.215 22 C 0.003 3.997 23 C -0.036 4.036 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.117 0.883 42 H 0.041 0.959 43 H 0.065 0.935 44 H 0.041 0.959 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.679 2.411 -13.651 20.929 hybrid contribution 1.035 -0.301 0.209 1.098 sum -14.645 2.111 -13.443 19.991 Atomic orbital electron populations 1.21849 0.95500 1.01600 1.01583 1.21139 0.95487 0.96474 0.98592 1.21900 1.01380 0.95930 1.01489 1.21651 0.95573 1.00445 0.97595 1.21678 0.95432 1.00755 0.97978 1.21336 0.93164 1.01507 0.98054 1.21680 0.97612 1.01638 0.96861 1.20663 0.82050 0.79725 0.88122 1.90635 1.55087 1.52933 1.45144 1.48106 1.05433 1.57091 1.22494 1.22465 0.98332 0.96123 0.86753 1.21183 0.88571 0.95492 0.91554 1.44027 1.03028 1.64471 1.19931 1.19225 0.83552 1.43953 0.91890 0.91429 1.25100 0.97968 1.00042 0.96496 1.70030 1.38423 1.47145 0.98847 0.86204 0.83784 0.78779 0.77862 1.20195 1.21679 1.21452 1.21358 0.94813 0.92863 0.90671 1.22442 0.91662 0.99214 0.90262 0.92742 0.92932 0.92797 0.91377 0.92744 0.92272 0.93071 0.92007 0.91901 0.91719 0.92118 0.91480 0.91348 0.89181 0.89420 0.92351 0.90225 0.88319 0.95918 0.93485 0.95902 0.91507 0.91683 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.19 37.16 0.34 -0.67 16 2 C -0.10 -0.73 2.92 -90.62 -0.26 -1.00 16 3 C -0.15 -1.08 8.95 37.16 0.33 -0.75 16 4 C -0.12 -0.98 4.68 -26.73 -0.13 -1.10 16 5 C -0.12 -1.09 4.97 -26.73 -0.13 -1.22 16 6 C -0.10 -1.20 4.50 -26.73 -0.12 -1.32 16 7 C -0.14 -1.72 4.04 -27.88 -0.11 -1.84 16 8 C 0.51 8.86 7.70 -10.98 -0.08 8.78 16 9 O -0.56 -11.62 15.39 5.56 0.09 -11.54 16 10 N -0.60 -10.99 2.95 -172.24 -0.51 -11.50 16 11 C 0.09 1.79 6.59 -3.60 -0.02 1.76 16 12 C 0.16 3.82 5.51 -3.60 -0.02 3.80 16 13 N -0.59 -14.48 2.96 -171.80 -0.51 -14.99 16 14 C -0.26 -6.84 9.57 -15.06 -0.14 -6.98 16 15 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 16 C 0.00 0.08 4.91 -17.44 -0.09 -0.01 16 17 N -0.90 -25.86 11.20 55.49 0.62 -25.24 16 18 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.13 2.57 6.70 -3.39 -0.02 2.54 16 23 C 0.09 1.44 6.52 -3.39 -0.02 1.41 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 36 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.09 1.03 7.72 -51.92 -0.40 0.63 16 38 H 0.09 0.93 7.91 -51.93 -0.41 0.52 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.08 1.66 7.00 -51.93 -0.36 1.29 16 41 H 0.10 2.62 6.00 -51.93 -0.31 2.31 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.07 0.91 5.91 -51.93 -0.31 0.61 16 LS Contribution 364.01 15.07 5.49 5.49 Total: -1.00 -30.74 364.01 -9.11 -39.85 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -8.77 Total: -1.70 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -0.48 Total: 3.41 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.40 Total: -51.73 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.74 -9.11 -39.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457582450.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.503 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds