Wall clock time and date at job start Tue Mar 31 2020 05:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47062 * 2 1 4 4 C 1.53003 * 109.46930 * 183.36502 * 3 2 1 5 5 C 1.52994 * 109.38755 * 64.84509 * 4 3 2 6 6 C 1.50265 * 109.38525 * 184.63482 * 4 3 2 7 7 O 1.21282 * 118.62020 * 317.27790 * 6 4 3 8 8 N 1.33713 * 122.75033 * 137.25198 * 6 4 3 9 9 C 1.46006 * 122.92605 * 358.31596 * 8 6 4 10 10 C 1.52977 * 110.04816 * 18.15788 * 9 8 6 11 11 N 1.46898 * 109.30276 * 305.09867 * 4 3 2 12 12 C 1.46903 * 111.00321 * 312.96906 * 11 4 3 13 13 C 1.52997 * 109.47284 * 174.65296 * 12 11 4 14 14 H 1.09001 * 109.47341 * 54.99470 * 13 12 11 15 15 C 1.53005 * 109.46836 * 294.99379 * 13 12 11 16 16 C 1.52998 * 109.47292 * 175.00114 * 13 12 11 17 17 C 1.50700 * 109.47566 * 184.99716 * 16 13 12 18 18 H 1.08003 * 119.99511 * 359.97438 * 17 16 13 19 19 C 1.37874 * 120.00446 * 179.97438 * 17 16 13 20 20 N 1.31510 * 119.99685 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00091 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47132 * 59.99691 * 21 19 17 23 23 H 1.48498 * 109.46999 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46985 * 300.00122 * 21 19 17 25 25 H 1.09008 * 109.47058 * 299.99885 * 1 2 3 26 26 H 1.09001 * 109.47032 * 59.99733 * 1 2 3 27 27 H 1.08996 * 109.47492 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47275 * 240.00405 * 2 1 3 29 29 H 1.09001 * 109.47032 * 120.00267 * 2 1 3 30 30 H 1.09003 * 109.47001 * 63.36770 * 3 2 1 31 31 H 1.08992 * 109.47376 * 303.36516 * 3 2 1 32 32 H 1.08998 * 109.47437 * 179.79118 * 5 4 3 33 33 H 1.09003 * 109.47221 * 59.78672 * 5 4 3 34 34 H 1.09006 * 109.46917 * 299.78734 * 5 4 3 35 35 H 0.96999 * 118.53906 * 178.29060 * 8 6 4 36 36 H 1.09001 * 109.37636 * 138.33893 * 9 8 6 37 37 H 1.09006 * 109.37357 * 257.97963 * 9 8 6 38 38 H 1.09005 * 109.59345 * 69.47891 * 10 9 8 39 39 H 1.08999 * 109.60194 * 189.77918 * 10 9 8 40 40 H 1.09007 * 109.46621 * 294.64654 * 12 11 4 41 41 H 1.08995 * 109.47348 * 54.64413 * 12 11 4 42 42 H 1.09003 * 109.47076 * 300.00688 * 15 13 12 43 43 H 1.08998 * 109.46766 * 60.00061 * 15 13 12 44 44 H 1.08995 * 109.47413 * 180.02562 * 15 13 12 45 45 H 1.09009 * 109.46623 * 304.99386 * 16 13 12 46 46 H 1.08997 * 109.47178 * 64.98919 * 16 13 12 47 47 H 0.97004 * 120.00354 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5677 1.4433 -0.0847 5 6 4.0021 0.8558 -1.4288 6 6 4.0728 2.8539 0.0297 7 8 3.4929 3.7296 -0.5768 8 7 5.1345 3.1840 0.7725 9 6 5.8791 2.2127 1.5686 10 6 5.5748 0.7940 1.0840 11 7 4.1148 0.6244 1.0052 12 6 3.4764 0.9574 2.2856 13 6 3.9732 -0.0028 3.3682 14 1 5.0622 0.0238 3.4057 15 6 3.5087 -1.4237 3.0419 16 6 3.4057 0.4202 4.7247 17 6 3.9912 -0.4492 5.8075 18 1 4.6971 -1.2261 5.5534 19 6 3.6256 -0.2529 7.1223 20 7 2.7664 0.6935 7.4316 21 14 4.3508 -1.3310 8.4643 22 1 5.8281 -1.1801 8.4762 23 1 3.8001 -0.9203 9.7808 24 1 4.0004 -2.7501 8.2025 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.7267 1.9386 0.9187 31 1 1.6283 1.9735 -0.8582 32 1 5.0903 0.8591 -1.4922 33 1 3.5891 1.4572 -2.2387 34 1 3.6364 -0.1676 -1.5133 35 1 5.4230 4.1100 0.7827 36 1 6.9471 2.4072 1.4703 37 1 5.5911 2.3067 2.6158 38 1 6.0141 0.6425 0.0979 39 1 5.9919 0.0708 1.7848 40 1 3.7305 1.9805 2.5630 41 1 2.3948 0.8656 2.1871 42 1 2.4196 -1.4503 3.0044 43 1 3.9129 -1.7250 2.0755 44 1 3.8622 -2.1077 3.8133 45 1 3.6622 1.4621 4.9168 46 1 2.3215 0.3087 4.7156 47 1 2.5095 0.8319 8.3567 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589822094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:41 Heat of formation + Delta-G solvation = -47.185621 kcal Electronic energy + Delta-G solvation = -24417.396753 eV Core-core repulsion = 21213.516516 eV Total energy + Delta-G solvation = -3203.880237 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.22978 -37.78399 -35.96881 -35.08686 -33.09560 -32.23594 -30.68079 -28.83701 -26.85676 -26.75039 -25.46525 -23.80317 -23.11437 -22.14244 -20.82483 -19.04467 -17.96179 -17.33369 -16.77520 -16.28162 -15.83971 -15.27238 -14.95159 -14.55419 -14.39390 -14.08966 -13.66422 -13.34261 -13.13030 -12.78980 -12.47997 -12.42872 -12.23407 -12.08394 -11.93996 -11.71457 -11.47847 -11.45110 -11.09646 -10.90829 -10.85788 -10.81909 -10.61582 -10.40058 -10.33268 -10.23472 -9.97761 -9.62057 -9.18837 -9.08986 -8.99658 -8.35353 -8.08182 -6.00032 -4.01691 2.62714 3.16319 3.31922 3.37159 3.38825 3.93931 4.43378 4.45772 4.69434 4.87713 4.91899 5.08051 5.20625 5.29429 5.33495 5.35895 5.51200 5.58203 5.62979 5.70680 5.77014 5.78631 5.83384 5.91360 5.99299 5.99708 6.08709 6.12962 6.22428 6.34688 6.43475 6.45833 6.58633 6.63061 6.68776 6.94964 7.00634 7.12081 7.20151 7.27248 7.30964 7.65457 7.80775 7.99500 8.19156 8.42674 9.04557 9.61993 11.11328 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.004912 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.131574 B = 5699.492452 C = 6295.575056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.099 4.099 4 C 0.099 3.901 5 C -0.130 4.130 6 C 0.498 3.502 7 O -0.555 6.555 8 N -0.721 5.721 9 C 0.068 3.932 10 C 0.032 3.968 11 N -0.508 5.508 12 C 0.042 3.958 13 C -0.079 4.079 14 H 0.056 0.944 15 C -0.124 4.124 16 C 0.028 3.972 17 C -0.513 4.513 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.396 0.604 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.033 0.967 41 H 0.082 0.918 42 H 0.040 0.960 43 H 0.043 0.957 44 H 0.054 0.946 45 H 0.010 0.990 46 H 0.016 0.984 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.601 -0.239 -15.974 16.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.138 4.138 4 C 0.006 3.994 5 C -0.188 4.188 6 C 0.283 3.717 7 O -0.432 6.432 8 N -0.372 5.372 9 C -0.058 4.058 10 C -0.096 4.096 11 N -0.232 5.232 12 C -0.084 4.084 13 C -0.097 4.097 14 H 0.074 0.926 15 C -0.181 4.181 16 C -0.009 4.009 17 C -0.551 4.551 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.231 0.769 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.123 0.877 40 H 0.051 0.949 41 H 0.101 0.899 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.029 0.971 46 H 0.034 0.966 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.016 -0.441 -16.245 16.529 hybrid contribution 0.830 0.866 1.276 1.752 sum 3.846 0.426 -14.969 15.461 Atomic orbital electron populations 1.21789 0.96330 1.01429 1.01497 1.21574 0.94952 0.95703 1.03551 1.21611 0.90740 0.98402 1.03002 1.21258 0.96924 0.86664 0.94550 1.21811 1.01164 1.02174 0.93638 1.21258 0.79613 0.92795 0.78066 1.90696 1.56403 1.50199 1.45913 1.45629 1.31094 1.12539 1.47986 1.22179 0.96510 0.90585 0.96538 1.22638 0.89791 0.94370 1.02801 1.62724 1.03256 1.52478 1.04749 1.22659 0.99957 0.98126 0.87683 1.21222 0.99430 0.94175 0.94913 0.92577 1.21609 1.00051 0.96784 0.99671 1.19105 0.96272 0.96201 0.89333 1.21165 1.25512 1.16974 0.91494 0.92625 1.25010 0.95237 0.95406 0.98799 1.69953 1.33158 1.31970 1.18484 0.86708 0.79365 0.80995 0.81217 1.20345 1.21404 1.20258 0.92764 0.93274 0.92795 0.91893 0.89830 0.91483 0.90766 0.92560 0.91707 0.90082 0.76908 0.90362 0.90192 0.90146 0.87670 0.94862 0.89935 0.94073 0.93796 0.92721 0.97131 0.96605 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 37.16 0.37 -1.34 16 2 C -0.12 -1.44 5.20 -26.73 -0.14 -1.58 16 3 C -0.10 -1.32 3.28 -26.73 -0.09 -1.41 16 4 C 0.10 1.29 0.34 -132.97 -0.04 1.24 16 5 C -0.13 -1.41 8.19 37.15 0.30 -1.11 16 6 C 0.50 7.37 6.04 -11.67 -0.07 7.30 16 7 O -0.56 -9.95 17.16 5.56 0.10 -9.85 16 8 N -0.72 -9.13 5.34 -61.06 -0.33 -9.45 16 9 C 0.07 0.76 6.43 -4.32 -0.03 0.73 16 10 C 0.03 0.37 5.46 -3.68 -0.02 0.35 16 11 N -0.51 -6.64 3.43 -220.32 -0.76 -7.40 16 12 C 0.04 0.68 2.66 -3.82 -0.01 0.67 16 13 C -0.08 -1.46 2.19 -90.62 -0.20 -1.66 16 14 H 0.06 1.02 6.34 -51.93 -0.33 0.69 16 15 C -0.12 -2.19 8.63 37.16 0.32 -1.86 16 16 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 17 C -0.51 -13.78 8.41 -34.44 -0.29 -14.07 16 18 H 0.06 1.45 7.06 -52.48 -0.37 1.08 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -26.47 13.29 55.43 0.74 -25.74 16 21 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.68 6.40 -51.93 -0.33 0.35 16 29 H 0.08 1.13 5.95 -51.93 -0.31 0.82 16 30 H 0.07 1.00 6.53 -51.93 -0.34 0.66 16 31 H 0.07 0.99 7.97 -51.93 -0.41 0.58 16 32 H 0.06 0.57 6.47 -51.93 -0.34 0.23 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.81 6.49 -51.93 -0.34 0.47 16 35 H 0.40 4.58 8.84 -40.82 -0.36 4.22 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.06 6.82 -51.93 -0.35 0.70 16 38 H 0.08 0.79 6.24 -51.93 -0.32 0.47 16 39 H 0.11 1.20 6.57 -51.93 -0.34 0.86 16 40 H 0.03 0.58 5.78 -51.93 -0.30 0.28 16 41 H 0.08 1.39 4.89 -51.93 -0.25 1.13 16 42 H 0.04 0.73 8.04 -51.93 -0.42 0.31 16 43 H 0.04 0.67 7.75 -51.93 -0.40 0.27 16 44 H 0.05 1.05 6.95 -51.93 -0.36 0.69 16 45 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 347.11 15.07 5.23 5.23 Total: -1.00 -30.62 347.11 -8.13 -38.75 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -7.98 Total: 2.98 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -0.12 Total: -10.70 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: -0.35 Total: -42.59 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.10 Total: -9.85 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.62 -8.13 -38.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589822094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.434 kcal (2) G-P(sol) polarization free energy of solvation -30.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds